Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d002876_T001
CDS Infomation	cds chromosome:B73_RefGen_v4:2:25317220:25323118:-1 gene:Zm00001d002876 gene_biotype:protein_coding transcript_biotype:protein_coding description:Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain
Sequence	ATGCCCGGGACGGCGAGACGCACCGCACAGCCCCGGGTTCGGTGGTCCCCATCCAACCCA CGCCTGGAACGACCGGCGTGCCGCCTGCCGCGCCTGGTGGGGGAGTGCGTGAGCCCTGAG GCACTTGTTGCTCTAAAGAAAGGCACTCAACTCCTTAAATATGGTCGCAAAGGAAAGCCT AAATTCATTCCCTTCAGACTATCGAATGATGAATCGACTCTTGTTTGGGTTTCAAATAAC AAAGATAAAAGTTTGAAACTAGCTTCTGTGTCTAGGATTCTCTCAGGCCAAAGAACGCTG GTTTTTCAACGTTTTCTGCTCCCCGAGAAGGACCATTTATCCTTCTCCCTCATATATAAT GATGGCAAGCGGTCTCTCGATCTGATCTGCAAGAATAAAGTCGAGGCGGAGGCTTGGTTT ACTGGTCTTAGTGCCTTGATATGTCGAGGACAGCATGGATCCCAGGTCCAACATATAGAT GGAATCCGGATCGCTGGACTTCCTTTTGATGGTGCAAGAGAAAGTAGCCTAAGTGGTAGC TCTACTTTCACTTCGGATTCCTTTGAGAATAAGCTGAGCTCGGTAAACTCTTCCAAGGAT CGTTCTTCGGGAGAATATACATATTCAGAAAGGACTGATGTGTCGGATATGCAAGTGAAA AGTGTTTCTTCTTCAGACATTCGAATCAGTGTTTCCAGTGCCCTTAGCACATCCAGCCAT GGCTCTGGAGGTGAAGATTCCGAATCGTTTGGAGATATTTATGTATGGGGGGAAGTCATC TGTGATACCATCTCAAGATCAGGGTCTGATAGAAGTGCTTACTCTCCTGGCACAACTACA GATGTTCTTGTACCAAAGCCCCTAGAGTCAAATGTAATGCTCGATGTGAGTTATGTGGCT TGTGGCGTGAAACACGCTGCCCTTGTTACAAGACAGGCAGAGGTATTTACGTGGGGAGAA GAATGCAGCGGTCGTCTCGGTCATGGCATTGGAACAAATGTTTTCCAGCCACGTCTTGTT GAGTCACTATCGACCTGCAATGTCGAACTAATTGCCTGTGGTGAATTCCACACTTGCGCT GTCACTGCAACTGGTGATCTCTACACCTGGGGAGATGGCACACATAATGCTGGATTGCTT GGTCATGGTAGTAACGTGAGCCACTGGATCCCAAAAAGAGTGTCAGGTCCACTGGATGGT CTTCCGGTATCAGCTGTATCTTGCGGCACATGGCATACAGCCTTGATAACTAGCTCTGGG CAGTTATACACATTTGGTGATGGCACATTTGGAGTCTTAGGTCATGGAAACAGAGCATCA TGCTCATATCCAAAGGAAGTGGAGTCTTTGAAGGGTCTGAGGACAATTTCTGTTTCGTGT GGTGTGTGGCATACTGCTGCTGTTGTTGAGGTTATCATTTCACAGTCAAATGCTTCATCT GGAAAGTTGTTCACTTGGGGTGATGGAGACAAATATCGCCTGGGTCATGGTGATAGGTCT TCAAAACTGAAACCAACATGCGTCCCCTCGTTGATAGATTACAACTTCCATAAGGCTGCA TGTGGCCATACTCTTACGATTGGGTTGACTACCTCAGGGCACATTTTTACTGTTGGAAGC CCTGTGTATGGACAGCTTGGCAATCCAAATAATGATGGAAGGTATCCTCGCCTGGTCGAA GAGCAGCTTGGGGGTGGCGGTGTTGTGGAGGTTGCTTGTGGGTCTTATCATGTCGCGGTT TTGACAAATGCTGGTGAAGTTTACACATGGGGTAAGGGTACAAATGGAAGATTAGGCCAT GGTGATATTGCGGATCGTAAAGTGCCTACACTCGTTGAGGCATTGAAGGATAGGTCTGTA AAACGTGTTGCTTGTGGATCAAGCTTTACAGCAGCCATCTGTCAGCACAAATGGGTGTCT GGGATGGAGCAGTCTCAGTGCTCGGCATGCAGGCAGCCATTTGGTTTCACTCGAAAAAGG CACAACTGTTACAATTGTGGTTTAGTACACTGCCATTCGTGCAGTTCAAAGAAGGCTCTG AGAGCAGCATTGTCTCCAAACCCGGGTAAGCCATACCGTGTCTGTGATTCATGTTACGTG AAGCTAAGTAAAGTTTTGGATTCTGGTGTTAGTTATAGCAGAAATACTATCCCCCGCTTA CCTGGTGATACAAAGGCCGAGAGAATAGACACAAAGGCAACCAGAGTTGCACAGTCTAAT AGTTCAGATATGATTAGGAATTTGGATGTGAAGGCAGCCAAGCAGACGAAGAAGTCTGAG TATTCGTCGCAAGTTCCAGCGACGTTGCAGCTGAAAGACATCCCTTTCATCAGCGCACCT GACCTGCAGAACCTGTCTACAGTGGCTAATCAGTACCCTTATGACCCCAGATCTACTTTA CCATCCTTGAGAATGCCATATCTGAACTACTCCAGCTCCATGTCCTCGGAAAGCTCCGAG AGTCTTAAGGATGCAAATGAACTCCTGAAGCAAGAGGTTCAAAAACTACAAGCGGAGGTT AATAGTTTGAGACAGGAACGTGAACAGCAAGATGCTGAGCTGCAGAAAGCAGATGCTAAA GCCCGTGAAGCGATGAACCTTGCCACCGAGGAAGCATCCAAACTGAAGACAGCGAAGGAT GTCATAAATTCACTAACAGCCCAGCTAAAAGAAATGTCTGAAAGGCTTCCTCCTGGAGCA TGTGACGTGAAGAACAATGGACGCGTTATGGGCGATTTAGCGCCCGAAATGGGGAGAGAG AAGCAGATGCGATATGGTGATCGGTTCAGTGGATTGCCTGCTCAAGTTTACCAAACAAGC AACTACAGTGAAACAGCCATGGTTCCTCCACAAGGGAGCAGCAGGAGCGAGCACGTCGAC GGTGTCCGAGAGTTCTTCTCCCCTGTGCAGCAGATGGCCAATGGAGGAGGGTCTACGACT ATTGGGTATCGTTACAGGTCAGATGACCACGACCGAAGGGAGACAGACAGGTTCCAGATA AATCTGCAGAGCTTGAATACGAGAAGCTCTAATTCTCCCAGTAACCAAGTCGACGCGGAG TGGATAGAACAGTATGAGCCAGGAGTGTACCTGACTCTAGTTTCTCTTCGTGATGGAACC AAAGAGCTGAAACGCGTACGGTTCAGCCGAAGGAGATTTGGTGAACACCAAGCAGAATCA TGGTGGAAAGACAACTGTGAGAAAGTGTACGACAAGTACAATGTCTGCGGAACAGATCGT CTCTCTTCGGTAACGACAGCCTAG

Peptide Sequence

PEP ID	Zm00001d002876_P001
PEP Infomation	pep chromosome:B73_RefGen_v4:2:25317220:25323118:-1 gene:Zm00001d002876 transcript:Zm00001d002876_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain
Sequence	MPGTARRTAQPRVRWSPSNPRLERPACRLPRLVGECVSPEALVALKKGTQLLKYGRKGKP KFIPFRLSNDESTLVWVSNNKDKSLKLASVSRILSGQRTLVFQRFLLPEKDHLSFSLIYN DGKRSLDLICKNKVEAEAWFTGLSALICRGQHGSQVQHIDGIRIAGLPFDGARESSLSGS STFTSDSFENKLSSVNSSKDRSSGEYTYSERTDVSDMQVKSVSSSDIRISVSSALSTSSH GSGGEDSESFGDIYVWGEVICDTISRSGSDRSAYSPGTTTDVLVPKPLESNVMLDVSYVA CGVKHAALVTRQAEVFTWGEECSGRLGHGIGTNVFQPRLVESLSTCNVELIACGEFHTCA VTATGDLYTWGDGTHNAGLLGHGSNVSHWIPKRVSGPLDGLPVSAVSCGTWHTALITSSG QLYTFGDGTFGVLGHGNRASCSYPKEVESLKGLRTISVSCGVWHTAAVVEVIISQSNASS GKLFTWGDGDKYRLGHGDRSSKLKPTCVPSLIDYNFHKAACGHTLTIGLTTSGHIFTVGS PVYGQLGNPNNDGRYPRLVEEQLGGGGVVEVACGSYHVAVLTNAGEVYTWGKGTNGRLGH GDIADRKVPTLVEALKDRSVKRVACGSSFTAAICQHKWVSGMEQSQCSACRQPFGFTRKR HNCYNCGLVHCHSCSSKKALRAALSPNPGKPYRVCDSCYVKLSKVLDSGVSYSRNTIPRL PGDTKAERIDTKATRVAQSNSSDMIRNLDVKAAKQTKKSEYSSQVPATLQLKDIPFISAP DLQNLSTVANQYPYDPRSTLPSLRMPYLNYSSSMSSESSESLKDANELLKQEVQKLQAEV NSLRQEREQQDAELQKADAKAREAMNLATEEASKLKTAKDVINSLTAQLKEMSERLPPGA CDVKNNGRVMGDLAPEMGREKQMRYGDRFSGLPAQVYQTSNYSETAMVPPQGSSRSEHVD GVREFFSPVQQMANGGGSTTIGYRYRSDDHDRRETDRFQINLQSLNTRSSNSPSNQVDAE WIEQYEPGVYLTLVSLRDGTKELKRVRFSRRRFGEHQAESWWKDNCEKVYDKYNVCGTDR LSSVTTA

Transcript Sequence

Transcript ID	Zm00001d002876_T001
Transcript Infomation	cdna chromosome:B73_RefGen_v4:2:25317220:25323118:-1 gene:Zm00001d002876 gene_biotype:protein_coding transcript_biotype:protein_coding description:Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain
Sequence	ATGCCCGGGACGGCGAGACGCACCGCACAGCCCCGGGTTCGGTGGTCCCCATCCAACCCA CGCCTGGAACGACCGGCGTGCCGCCTGCCGCGCCTGGTGGGGGAGTGCGTGAGCCCTGAG GCACTTGTTGCTCTAAAGAAAGGCACTCAACTCCTTAAATATGGTCGCAAAGGAAAGCCT AAATTCATTCCCTTCAGACTATCGAATGATGAATCGACTCTTGTTTGGGTTTCAAATAAC AAAGATAAAAGTTTGAAACTAGCTTCTGTGTCTAGGATTCTCTCAGGCCAAAGAACGCTG GTTTTTCAACGTTTTCTGCTCCCCGAGAAGGACCATTTATCCTTCTCCCTCATATATAAT GATGGCAAGCGGTCTCTCGATCTGATCTGCAAGAATAAAGTCGAGGCGGAGGCTTGGTTT ACTGGTCTTAGTGCCTTGATATGTCGAGGACAGCATGGATCCCAGGTCCAACATATAGAT GGAATCCGGATCGCTGGACTTCCTTTTGATGGTGCAAGAGAAAGTAGCCTAAGTGGTAGC TCTACTTTCACTTCGGATTCCTTTGAGAATAAGCTGAGCTCGGTAAACTCTTCCAAGGAT CGTTCTTCGGGAGAATATACATATTCAGAAAGGACTGATGTGTCGGATATGCAAGTGAAA AGTGTTTCTTCTTCAGACATTCGAATCAGTGTTTCCAGTGCCCTTAGCACATCCAGCCAT GGCTCTGGAGGTGAAGATTCCGAATCGTTTGGAGATATTTATGTATGGGGGGAAGTCATC TGTGATACCATCTCAAGATCAGGGTCTGATAGAAGTGCTTACTCTCCTGGCACAACTACA GATGTTCTTGTACCAAAGCCCCTAGAGTCAAATGTAATGCTCGATGTGAGTTATGTGGCT TGTGGCGTGAAACACGCTGCCCTTGTTACAAGACAGGCAGAGGTATTTACGTGGGGAGAA GAATGCAGCGGTCGTCTCGGTCATGGCATTGGAACAAATGTTTTCCAGCCACGTCTTGTT GAGTCACTATCGACCTGCAATGTCGAACTAATTGCCTGTGGTGAATTCCACACTTGCGCT GTCACTGCAACTGGTGATCTCTACACCTGGGGAGATGGCACACATAATGCTGGATTGCTT GGTCATGGTAGTAACGTGAGCCACTGGATCCCAAAAAGAGTGTCAGGTCCACTGGATGGT CTTCCGGTATCAGCTGTATCTTGCGGCACATGGCATACAGCCTTGATAACTAGCTCTGGG CAGTTATACACATTTGGTGATGGCACATTTGGAGTCTTAGGTCATGGAAACAGAGCATCA TGCTCATATCCAAAGGAAGTGGAGTCTTTGAAGGGTCTGAGGACAATTTCTGTTTCGTGT GGTGTGTGGCATACTGCTGCTGTTGTTGAGGTTATCATTTCACAGTCAAATGCTTCATCT GGAAAGTTGTTCACTTGGGGTGATGGAGACAAATATCGCCTGGGTCATGGTGATAGGTCT TCAAAACTGAAACCAACATGCGTCCCCTCGTTGATAGATTACAACTTCCATAAGGCTGCA TGTGGCCATACTCTTACGATTGGGTTGACTACCTCAGGGCACATTTTTACTGTTGGAAGC CCTGTGTATGGACAGCTTGGCAATCCAAATAATGATGGAAGGTATCCTCGCCTGGTCGAA GAGCAGCTTGGGGGTGGCGGTGTTGTGGAGGTTGCTTGTGGGTCTTATCATGTCGCGGTT TTGACAAATGCTGGTGAAGTTTACACATGGGGTAAGGGTACAAATGGAAGATTAGGCCAT GGTGATATTGCGGATCGTAAAGTGCCTACACTCGTTGAGGCATTGAAGGATAGGTCTGTA AAACGTGTTGCTTGTGGATCAAGCTTTACAGCAGCCATCTGTCAGCACAAATGGGTGTCT GGGATGGAGCAGTCTCAGTGCTCGGCATGCAGGCAGCCATTTGGTTTCACTCGAAAAAGG CACAACTGTTACAATTGTGGTTTAGTACACTGCCATTCGTGCAGTTCAAAGAAGGCTCTG AGAGCAGCATTGTCTCCAAACCCGGGTAAGCCATACCGTGTCTGTGATTCATGTTACGTG AAGCTAAGTAAAGTTTTGGATTCTGGTGTTAGTTATAGCAGAAATACTATCCCCCGCTTA CCTGGTGATACAAAGGCCGAGAGAATAGACACAAAGGCAACCAGAGTTGCACAGTCTAAT AGTTCAGATATGATTAGGAATTTGGATGTGAAGGCAGCCAAGCAGACGAAGAAGTCTGAG TATTCGTCGCAAGTTCCAGCGACGTTGCAGCTGAAAGACATCCCTTTCATCAGCGCACCT GACCTGCAGAACCTGTCTACAGTGGCTAATCAGTACCCTTATGACCCCAGATCTACTTTA CCATCCTTGAGAATGCCATATCTGAACTACTCCAGCTCCATGTCCTCGGAAAGCTCCGAG AGTCTTAAGGATGCAAATGAACTCCTGAAGCAAGAGGTTCAAAAACTACAAGCGGAGGTT AATAGTTTGAGACAGGAACGTGAACAGCAAGATGCTGAGCTGCAGAAAGCAGATGCTAAA GCCCGTGAAGCGATGAACCTTGCCACCGAGGAAGCATCCAAACTGAAGACAGCGAAGGAT GTCATAAATTCACTAACAGCCCAGCTAAAAGAAATGTCTGAAAGGCTTCCTCCTGGAGCA TGTGACGTGAAGAACAATGGACGCGTTATGGGCGATTTAGCGCCCGAAATGGGGAGAGAG AAGCAGATGCGATATGGTGATCGGTTCAGTGGATTGCCTGCTCAAGTTTACCAAACAAGC AACTACAGTGAAACAGCCATGGTTCCTCCACAAGGGAGCAGCAGGAGCGAGCACGTCGAC GGTGTCCGAGAGTTCTTCTCCCCTGTGCAGCAGATGGCCAATGGAGGAGGGTCTACGACT ATTGGGTATCGTTACAGGTCAGATGACCACGACCGAAGGGAGACAGACAGGTTCCAGATA AATCTGCAGAGCTTGAATACGAGAAGCTCTAATTCTCCCAGTAACCAAGTCGACGCGGAG TGGATAGAACAGTATGAGCCAGGAGTGTACCTGACTCTAGTTTCTCTTCGTGATGGAACC AAAGAGCTGAAACGCGTACGGTTCAGCCGAAGGAGATTTGGTGAACACCAAGCAGAATCA TGGTGGAAAGACAACTGTGAGAAAGTGTACGACAAGTACAATGTCTGCGGAACAGATCGT CTCTCTTCGGTAACGACAGCCTAGCGTAGGCCCTGCATGCATGACATCCAAAAAGGAGGG CAAAGCCAGTGCGCCTGTAGCATCGTTGTGCCCTCTTTCTTTCTCTCCATCATTTGAAGA GCGGGAGGCATCCAGCTTGGTTTTGGAACGTGCGCTGCTTAATCGACTTGTTTATCTTTT TCTGTCACCTGCTTGGATTCCCCTCTCTCTCGTTGTCGTTGTATAGAGGAGATGATGGAA CCAAAGCAGTTGTTGCTCCTTTGACTGAGATATACTATATACACGTAGCTGGGCGTAAAT CGTAATGCAAGCCCCGTTATCGTCGCCTTGTGATGTATCTCTTCTGTCAGTCGTCATGCA TACTCTGTCTGTAACACCTGGTACACTCTCGTATTGATGGTACATATTTCTGACAGTCCT TTT