Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d002824_T003
CDS Infomation

cds chromosome:B73_RefGen_v4:2:23888140:23893252:1 gene:Zm00001d002824 gene_biotype:protein_coding transcript_biotype:protein_coding description:Vacuolar processing enzyme%2C beta-isozyme

Sequence

ATGATGGCAGCTGCGGCGTGGTTGTGTGGACTCCTCTCGCTCCTGGCCCTCGCCGGCGCT
GCGTCGGCTGCGGATGGGGCGGAGGGTGAGTGGGAGCCGCTGATACGGATGCCGACGGCG
AAGGGGAGTGACGCTGCTTCTGCTCCGGCTGCTGAGGATGATGAAGTGGGGACGAGGTGG
GCCGTGCTCGTCGCCGGATCCTTCGGTTATGGGAACTACCGGCACCAGGCCGATGTGTGC
CATGCGTACCAGATACTGCAGAAGGGAGGAGTGAAGAAGGAGAACATTGTGGTGTTCATG
TATGATGATATTGCCCACAACATTCTGAACCCTAGGCCTGGAGTTATCATTAACCATCCT
AAAGGAGCAAATGTTTATGATGGTGTTCCAAAGGATTACACAGGTGATCAGGTCACTACT
GAAAACTTCTTTGCTGTCCTCTTGGGCAATAGAAGTGCTACCACTGGAGGGAGTAAGAAG
GTGATAGACAGCAAACCTAATGACCACATCTTCATCTATTACTCAGATCATGGGGGTCCT
GGAGTTCTTGGTATGCCGAACCTGCCATATCTGTATGCTGGTGACTTCATCAAGGTCTTG
AAAAAGAAGCATGCTTCCAATAGCTACTCAAAAATGGTTATATATGTTGAAGCATGTGAA
AGTGGCAGTATCTTTGAGGGGTTAATGCCTGAAGATCTAAATATTTATGTCACAACAGCC
TCAAATCCAGTTGAAAATAGTTGGGGAACTTACTGCCCTGGGATGGAACCATCACCCCCT
CCTGAGTACATTACCTGTTTAGGTGATTTGTACAGTGTTTCTTGGATGGAAGACAGGTAA

Peptide Sequence

PEP ID

Zm00001d002824_P003
PEP Infomation

pep chromosome:B73_RefGen_v4:2:23888140:23893252:1 gene:Zm00001d002824 transcript:Zm00001d002824_T003 gene_biotype:protein_coding transcript_biotype:protein_coding description:Vacuolar processing enzyme%2C beta-isozyme

Sequence

MMAAAAWLCGLLSLLALAGAASAADGAEGEWEPLIRMPTAKGSDAASAPAAEDDEVGTRW
AVLVAGSFGYGNYRHQADVCHAYQILQKGGVKKENIVVFMYDDIAHNILNPRPGVIINHP
KGANVYDGVPKDYTGDQVTTENFFAVLLGNRSATTGGSKKVIDSKPNDHIFIYYSDHGGP
GVLGMPNLPYLYAGDFIKVLKKKHASNSYSKMVIYVEACESGSIFEGLMPEDLNIYVTTA
SNPVENSWGTYCPGMEPSPPPEYITCLGDLYSVSWMEDR

Transcript Sequence

Transcript ID

Zm00001d002824_T003
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:23888140:23893252:1 gene:Zm00001d002824 gene_biotype:protein_coding transcript_biotype:protein_coding description:Vacuolar processing enzyme%2C beta-isozyme

Sequence

GTCACCACTCACCCCAGTATCCCACTCTCTCGCACTTAACCGCCTGCTCTCTCTGTCTGA
CGCGCCGGCGCCGCCCTCGCGATCGATGATGGCAGCTGCGGCGTGGTTGTGTGGACTCCT
CTCGCTCCTGGCCCTCGCCGGCGCTGCGTCGGCTGCGGATGGGGCGGAGGGTGAGTGGGA
GCCGCTGATACGGATGCCGACGGCGAAGGGGAGTGACGCTGCTTCTGCTCCGGCTGCTGA
GGATGATGAAGTGGGGACGAGGTGGGCCGTGCTCGTCGCCGGATCCTTCGGTTATGGGAA
CTACCGGCACCAGGCCGATGTGTGCCATGCGTACCAGATACTGCAGAAGGGAGGAGTGAA
GAAGGAGAACATTGTGGTGTTCATGTATGATGATATTGCCCACAACATTCTGAACCCTAG
GCCTGGAGTTATCATTAACCATCCTAAAGGAGCAAATGTTTATGATGGTGTTCCAAAGGA
TTACACAGGTGATCAGGTCACTACTGAAAACTTCTTTGCTGTCCTCTTGGGCAATAGAAG
TGCTACCACTGGAGGGAGTAAGAAGGTGATAGACAGCAAACCTAATGACCACATCTTCAT
CTATTACTCAGATCATGGGGGTCCTGGAGTTCTTGGTATGCCGAACCTGCCATATCTGTA
TGCTGGTGACTTCATCAAGGTCTTGAAAAAGAAGCATGCTTCCAATAGCTACTCAAAAAT
GGTTATATATGTTGAAGCATGTGAAAGTGGCAGTATCTTTGAGGGGTTAATGCCTGAAGA
TCTAAATATTTATGTCACAACAGCCTCAAATCCAGTTGAAAATAGTTGGGGAACTTACTG
CCCTGGGATGGAACCATCACCCCCTCCTGAGTACATTACCTGTTTAGGTGATTTGTACAG
TGTTTCTTGGATGGAAGACAGGTAAGACCATAAAACTCGTTTGAGATCCATTGTTGTGTG
GTATTATATTATGTTGGATCAAAATAAATTCTTGCTTTTTTACACTTGTGGAAGGTATAC
CTTATAGAGCTTACATATTTGATATATTGTTTTGCTAATTTTAGTTATGTAGTGTGATAC
GATTCTAGTTATGCTAGGTATTTTTAAGTGTGGACTATTGTGTTATTGCCCATGATCAAA
CTACCTTTTCTCATGATTGGTCCATTTGTTTTATCTTACTTGGTTGATGCAGCTAAACTT
TGCGTTAACACTGTTATTTGAAACCTATTCGTGAATTATTTCTAAATTTGTACATACATG
TCATGTAACATGTCTTCATATCACATTAAAGAAATGCTACTCCTTCCGATGTTCTAGTTT
TGTCCAACCTTCTCTAGTTTTGACCAACTTTATAGAAAAATATATTAGCATCTACAATAC
CATGACTTGTGGGTTTTATCGGGTTTTTAATTCTAGCCTACCCCAACTTGCTTGGATAAA
AGGCTTTGTTGTTGTTGTTGTTTTTGTTGATCTACATACCAAGTAAATGCACTATCAAGA
CATATTTTATGGTGGATTTCATGAAACTCATTTCATGTTGTACATGTATGTGCATTTTTC
TATAAACTTGAATAAAGTTAGAGAATTTGACTTAGGACAAAACAAAAACATTTTACAATT
TGGAACACAGGTAGTACATAAGCTATATGTGGTTGTTATTTTGCACAATAGTCATCCACT
TTACTAGTATTTATTATTTAAGGTATTGGCAGATCACAATGTTCAGTCCTAAGTGGTAAT
AGCAAATACATGTAAAAAACAGTAGATAATTGAAACGGTTGGGGAAGTATTGATTATTGA
GCAACCAGAGGACTGTTAACAAGTATATGCATAGTGCTTTTATGCTTTACTTTTCTTTCA
GTCAATATGGCCTGAATATACAAGCTTGGCAGCAAATACTTATGACTGCTATACTTACTA
AGCCTGCTCATTGAACTGATCTGATTCTAAATGGCAGTGAAACCCACAATCTAAAGAAGG
AAACCATCAAGGATCAGTATGAAGTGGTGAAAACAAGAACCTCAAACTCAAATAAGTACA
AAGAGGGTTCTCATGTTATGGAGTATGGTGATAAGACCTTCAAGGATGAGAAGCTTTCCT
TTTATCAAGGTTTTGATCCTGCTAATGCCAACATTGCAAACATGCTGCTTTGGCCAGGCC
CAAAGGGTGCAGTCAATCAAAGAGATGCTGATCTTCTCTTCATGTGGAAGAGGTACGAGC
AGTTAAATGGGGGGACCGAAGAGAAGCTGAGGGCTCTCATAGAGATTAAAGAAACTGTTC
AGCACAGGAAGCATCTTGACAGCAGTATCGATTTCGTTGGGAGGCTCGTCTTCGGATTTG
AGAAAGGGCCTTCGATGCTTGAGGCTGTTAGAACCTCTGGTCAACCATTAGTCGATGACT
GGGACTGTTTGAAGAGGATGGTGCGGATTTTCGAGTCCCAGTGTGGTTCACTTACTCAGT
ACGGCATGAAGTACATGAGAGCGTTTGCAAACATCTGCAACAGTGGTATATCTGAGATGA
AAATGAGGGAGTCGAGCATCAGCGCTTGCAGCAGCTACAACTCGGCGAGGTGGAGCCCGA
TGGCTCGGGGACACAGTGCTTGATGGTAAAGATCAAATAGCAAAGCCCCCCGAGGTCTGC
TGCCCCATGTCCCTGTGAGCGAGCTCGTATCATCTGGGGACTGTGGACCCATCGACGGTT
GTACATATCATGCACTTGTGCTCGTGCCTATGTAAAGTAGTAATACCAACTCAACTCTGA
TCTTCATCCAAGTACCGAAATGATTAAAAGAT