Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d002797_T003
CDS Infomation

cds chromosome:B73_RefGen_v4:2:22932597:22937057:1 gene:Zm00001d002797 gene_biotype:protein_coding transcript_biotype:protein_coding description:Metal-nicotianamine transporter YSL2
Sequence

ATGAAGCAGGAGGGGCGGAGGCGGCAACACCAACACCAACACCACAGGCCGCCGCCGCGC
CTCGAGCTGGCTATGGCGCACGCGCGGGGCGGCGGGGGCCACGGCCACGGCCACGAGGAG
GAAGCGGAGGCGGCCGTCTGCCTGGACGGCGACTCCGAGGCGGGCGAAGCGCGCAGCGCG
GGGCGCGCGCCGCCGTGGCGGGACCAGCTGACGGCGCGCGGGATGGTGGCGAGCCTCGCC
GTCGGCGCCATGTACAGCGTCATCGTCATGAAGCTGGGCCTCACCACAGGGCTCGTCCCC
ACGCTCAACGTCTCCGCCGCGCTCATCGCCTTCGTCATCCTCCGCGGGTGGACGCAGGCG
CTCGCCCGCTTCGGCGTCGCTACGCGCCCGTTCACCCGCCAGGAGAACACCGTCGTCCAG
ACATGCGCCGTCGCCTGCTACAGCATCGCCGTCGGAGGTGGGTTTGGCTCCTTCTTGCTT
GCTCTGAACAAGAGGACCTACGAGATGGCTGGGGAGGACACGGAAGGCAACCTTCCGGGA
AGCTACAAGGAGCCTGGCATTGGCTGGATGACCGGCTTCCTCTTCGCCGTAAGCTTCGTC
GGGATTGTTGCGCTAATACCTCTAAGGAAGATCATGATAATTGACTACAAATTAACTTAC
CCAAGTGGTACTGCAACAGCTGTTCTTATAAATGGATTCCACACAACTCATGGAGATGCA
ACGGCAAAGCAGCAAGTGAATGGGTTCACAAAATACTTTGCAATCAGCTTCTTTTGGAGC
TTCTTCCAGTGGTTTTACTCAGGTGGAGACAACTGTGGGTTTTCACAGTTTCCCACTTTT
GGACTTAGAGCTTGGAAACAAACATTTTTCTTCGATTTCAGTCTAACATATGTTGGCGCT
GGGATGATTTGCTCTCACCTCGTTAATCTATCTCTCCTTCTTGGTGCACTTCTCTCATGG
GGAATAATGTGGCCACTGGTCAGTGATTTGAAAGGGGATTGGTATCCTGCAGATATGCCA
GAAAGCAGCATGAGAAGCCTGCAAGGTTACAAGGCCTTCATCTGCATAGCGCTCCTCTTG
GGCGATGGTCTTTACAATTTTGTTAAGGTTGTTGCATTCACTGTTAAGAGTCTACTTGGC
AGATCAAGACTGAAGAATGCAAAGAAAGAGGAAGACATTCCAGTGCTTGATGAAATTCAG
CGCAATGAGATTTTTACAAGAGACAGTATCCCCACATGGCTAGCCTACTCTGGATATCTT
GCACTATCAGCTGTTGCTGTGTTTGCCATTCCCTTGATGTTCCATGAGATGAAATGGTAC
TATGTTATTATAGCATACTTATTGGCCCCGGCATTGGGTTTCTGCAATGCCTATGGTGCT
GGCCTTACTGATATCAACATGGCCTACAATTATGGAAAGGTCGCGCTCTTTATTCTTGCG
GCCTGGGCTGGGAAGGACTCTGGTGTTGTAGCTGGCCTAGTGGGTTGTGGTTTGGTGAAA
TCACTGGTGTCAATATCCGCTGATCTGATGCATGACTTCAAGACTGGACATCTTACATTA
ACATCACCTAGATCAATGATTATTGCTCAGGCTATTGGCACTGCCATGGGCTGTGTCATT
GGACCACTGACATTTTTACTGTTCTACAAGGCTTTTGACATTGGAAACCCTGATGGGTAC
TGGAAGGCACCATATGCTCTAATCTACCGCAATATGGCAATTCTTGGTGTCCAGGGCTTC
TCTGCTCTGCCCCTGCATTGTTTGCAGCTGTGCTACGGATTCTTTGGATTTGCAGTGGCA
GCCAATCTGATGAGGGACCTCTTGCCACCAAAGTACGGCAAATGGGTTCCATTACCAATG
GCAATGGGGGTTCCCTTCCTAGTTGGTGCGAGCTTTGCCATCGACATGTGTGTGGGGAGC
TTGATGGTCTTCATCTGGCACATCATTGACAGAAGTAAAGCATCTTTAATGGTGCCAGCA
GTTGCATCTGGGTTGATATGTGGCGATGGGCTTTGGATCTTCCCTGAATCCTTGCTTGCC
TTGGCCAAGATCAGTCCACCATTGTGCATGGCATTCAGGTCTTCACACTAG

Peptide Sequence

PEP ID

Zm00001d002797_P003
PEP Infomation

pep chromosome:B73_RefGen_v4:2:22932597:22937057:1 gene:Zm00001d002797 transcript:Zm00001d002797_T003 gene_biotype:protein_coding transcript_biotype:protein_coding description:Metal-nicotianamine transporter YSL2
Sequence

MKQEGRRRQHQHQHHRPPPRLELAMAHARGGGGHGHGHEEEAEAAVCLDGDSEAGEARSA
GRAPPWRDQLTARGMVASLAVGAMYSVIVMKLGLTTGLVPTLNVSAALIAFVILRGWTQA
LARFGVATRPFTRQENTVVQTCAVACYSIAVGGGFGSFLLALNKRTYEMAGEDTEGNLPG
SYKEPGIGWMTGFLFAVSFVGIVALIPLRKIMIIDYKLTYPSGTATAVLINGFHTTHGDA
TAKQQVNGFTKYFAISFFWSFFQWFYSGGDNCGFSQFPTFGLRAWKQTFFFDFSLTYVGA
GMICSHLVNLSLLLGALLSWGIMWPLVSDLKGDWYPADMPESSMRSLQGYKAFICIALLL
GDGLYNFVKVVAFTVKSLLGRSRLKNAKKEEDIPVLDEIQRNEIFTRDSIPTWLAYSGYL
ALSAVAVFAIPLMFHEMKWYYVIIAYLLAPALGFCNAYGAGLTDINMAYNYGKVALFILA
AWAGKDSGVVAGLVGCGLVKSLVSISADLMHDFKTGHLTLTSPRSMIIAQAIGTAMGCVI
GPLTFLLFYKAFDIGNPDGYWKAPYALIYRNMAILGVQGFSALPLHCLQLCYGFFGFAVA
ANLMRDLLPPKYGKWVPLPMAMGVPFLVGASFAIDMCVGSLMVFIWHIIDRSKASLMVPA
VASGLICGDGLWIFPESLLALAKISPPLCMAFRSSH

Transcript Sequence

Transcript ID

Zm00001d002797_T003
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:22932597:22937057:1 gene:Zm00001d002797 gene_biotype:protein_coding transcript_biotype:protein_coding description:Metal-nicotianamine transporter YSL2
Sequence

TTCTTCATCAAGTTATTTTCTTGCTCCACGGATTGCCTGCTCTGATGATCTGGTCCTTGG
CAAGATCACACTCGTGTTCATAAACTCACCAACTCACTGACACCCCCGTACTCTTTCTTC
TTCACCCACGGCCAAGATAGAACTCACTGGCATGCTAGGCTTCCTCTTTTTAATTCACCA
ACTCCCTCCTCCGGCGCATCCGCATCCGAATCTCAATCCCCACGGGCACGAATCTGACGC
TGCGAAAACCTTTCCGCCATGAAGCAGGAGGGGCGGAGGCGGCAACACCAACACCAACAC
CACAGGCCGCCGCCGCGCCTCGAGCTGGCTATGGCGCACGCGCGGGGCGGCGGGGGCCAC
GGCCACGGCCACGAGGAGGAAGCGGAGGCGGCCGTCTGCCTGGACGGCGACTCCGAGGCG
GGCGAAGCGCGCAGCGCGGGGCGCGCGCCGCCGTGGCGGGACCAGCTGACGGCGCGCGGG
ATGGTGGCGAGCCTCGCCGTCGGCGCCATGTACAGCGTCATCGTCATGAAGCTGGGCCTC
ACCACAGGGCTCGTCCCCACGCTCAACGTCTCCGCCGCGCTCATCGCCTTCGTCATCCTC
CGCGGGTGGACGCAGGCGCTCGCCCGCTTCGGCGTCGCTACGCGCCCGTTCACCCGCCAG
GAGAACACCGTCGTCCAGACATGCGCCGTCGCCTGCTACAGCATCGCCGTCGGAGGTGGG
TTTGGCTCCTTCTTGCTTGCTCTGAACAAGAGGACCTACGAGATGGCTGGGGAGGACACG
GAAGGCAACCTTCCGGGAAGCTACAAGGAGCCTGGCATTGGCTGGATGACCGGCTTCCTC
TTCGCCGTAAGCTTCGTCGGGATTGTTGCGCTAATACCTCTAAGGAAGATCATGATAATT
GACTACAAATTAACTTACCCAAGTGGTACTGCAACAGCTGTTCTTATAAATGGATTCCAC
ACAACTCATGGAGATGCAACGGCAAAGCAGCAAGTGAATGGGTTCACAAAATACTTTGCA
ATCAGCTTCTTTTGGAGCTTCTTCCAGTGGTTTTACTCAGGTGGAGACAACTGTGGGTTT
TCACAGTTTCCCACTTTTGGACTTAGAGCTTGGAAACAAACATTTTTCTTCGATTTCAGT
CTAACATATGTTGGCGCTGGGATGATTTGCTCTCACCTCGTTAATCTATCTCTCCTTCTT
GGTGCACTTCTCTCATGGGGAATAATGTGGCCACTGGTCAGTGATTTGAAAGGGGATTGG
TATCCTGCAGATATGCCAGAAAGCAGCATGAGAAGCCTGCAAGGTTACAAGGCCTTCATC
TGCATAGCGCTCCTCTTGGGCGATGGTCTTTACAATTTTGTTAAGGTTGTTGCATTCACT
GTTAAGAGTCTACTTGGCAGATCAAGACTGAAGAATGCAAAGAAAGAGGAAGACATTCCA
GTGCTTGATGAAATTCAGCGCAATGAGATTTTTACAAGAGACAGTATCCCCACATGGCTA
GCCTACTCTGGATATCTTGCACTATCAGCTGTTGCTGTGTTTGCCATTCCCTTGATGTTC
CATGAGATGAAATGGTACTATGTTATTATAGCATACTTATTGGCCCCGGCATTGGGTTTC
TGCAATGCCTATGGTGCTGGCCTTACTGATATCAACATGGCCTACAATTATGGAAAGGTC
GCGCTCTTTATTCTTGCGGCCTGGGCTGGGAAGGACTCTGGTGTTGTAGCTGGCCTAGTG
GGTTGTGGTTTGGTGAAATCACTGGTGTCAATATCCGCTGATCTGATGCATGACTTCAAG
ACTGGACATCTTACATTAACATCACCTAGATCAATGATTATTGCTCAGGCTATTGGCACT
GCCATGGGCTGTGTCATTGGACCACTGACATTTTTACTGTTCTACAAGGCTTTTGACATT
GGAAACCCTGATGGGTACTGGAAGGCACCATATGCTCTAATCTACCGCAATATGGCAATT
CTTGGTGTCCAGGGCTTCTCTGCTCTGCCCCTGCATTGTTTGCAGCTGTGCTACGGATTC
TTTGGATTTGCAGTGGCAGCCAATCTGATGAGGGACCTCTTGCCACCAAAGTACGGCAAA
TGGGTTCCATTACCAATGGCAATGGGGGTTCCCTTCCTAGTTGGTGCGAGCTTTGCCATC
GACATGTGTGTGGGGAGCTTGATGGTCTTCATCTGGCACATCATTGACAGAAGTAAAGCA
TCTTTAATGGTGCCAGCAGTTGCATCTGGGTTGATATGTGGCGATGGGCTTTGGATCTTC
CCTGAATCCTTGCTTGCCTTGGCCAAGATCAGTCCACCATTGTGCATGGCATTCAGGTCT
TCACACTAGAGTAACAAAATGCTCGACATCTGAGAACAGTTCCATGTCCAATCGGAGAAG
CTGTTGGCATGCCAAGTTTGTTATTAATTAGCTGGGATATGATACATGCAGGTAGGTAAA
GATGCAGTGCCTATCTGGATGTTACCTACATATAATGACGTAATGTGGTACCCCTGTAAA
ATTTATCATATGCAAGATGATACATCACATTAGAGCAATGGTAAGTTTGAGAATTTCACC
CCAGTGGTAATGGATGGATGCAAGAGCTAGCAGTAGCCAAAATTTTGCACCATAGGTTGT
ACCCCCACCCCTATAGTTTAATATGGAACCACAAGCTACAGTATACAAACCATCTTCCAA
AGACAGCTGACCCTATTGTCAATCACAGCTGGTTTTGGTAAAAGAAAAATGCAGTCAAAT
CTTGCATGAATGGTTAGCAAATCATGTATATATTTATGTATGTCTTTGCCATAACTTGGA
TTCACAAGATGCAATGTAGTAAGAGGCATCTTGGTCAGGCATCTGATACAATTGTAAAAT
CATCTGCTGCGTCCTTTTATCATAAACAAAATCATCAGGTGATGTATGCCTATGAATAGT
TAGCAAAAGGTACATATATGGTTATGTATATTAAACACGTTCTGTGAAGAAGAAATGTAA
CCATT