Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d002771_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:2:22167851:22169500:-1 gene:Zm00001d002771 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ATGCCCTCCCGCTCCCCTCCCATTGCCCGTCTCCTGCATCTACGCCGCCTGTCCAAGTCC
GCTCGACATTACCTACTTCGCTTCGCCGCCATCGCGAAGGAACACTCCGACCAGCCCCCG
CCCCCGCCTCTCCCGTCGCGACCACGGTCCCCGCACCCCTACGACTACAACCGTCTCATG
TCCGCGCTCGCCGCTTCAGTCGACGGTGACGGTCACCACCCAGGCGCCGGTGCCGAGCGG
GCCCTCCACCTGCTCGACGAAATGCGGAGCCTCATGGGGCGCCGCCCCGATGCCGCCTGC
TTCACCACGGCCGCCGCGGCGTTCTCATCGGCGTCTCAGCCGGGAGCCGCGCTCGCCGTG
CTAAACGCCATGGCCACCGATGGCGTCATGCCCGACGCTGCTGCTTGCACTGTGCTCGTC
GGGGTGTACGCCTGCCGCCTGCATTGGTTCGACGCGGCCTATGAGGTCGTCAGGTGGATG
ACGGCGAACGGCGTGGCCCTGGACGTAGTCACCTACTCGACGCTGATATCTGGGCTGTGC
AGCGCCGGGCGGGTGGCTGAGGCGCTTGGCGTGCTGGACCTGATGCTGGAGGAAGGGTGC
CAGCCCAATGCTCACACATATACGCCCATCCTGCACGCCTACTGCACGAGCGGGATGATA
CATGAGGCCAAGGAACTCTTGGAAACGATGATTGCAGCTGGTTTTGCACCGAGCACAGCC
ACTTACAATGTCCTGGTTGAAGCTCTATGCAAGGCTTGTGCTTTCAATGAAGTAGATGCG
CTTCTTGAGGAGAGCAGTGCAAAAGGGTGGACACCGGATACAATCACATACAGTACTTAC
ATGGATGGACTATGCAAAGATGGCAGAGTACATAAGAGCTTTGCATTGGTAGATAAGATG
TTGTCTGTTGGTCTGCGGCCCAATGAGATTACTCTGAATATCCTCCTTGATGGGGTTTGC
CGCAGGTCAACTGCTTGGGCTGCCAAGTGCCTGTTGGAGTGCAGTGCAGAGATTGGATGG
CATGTCAATGTTGTCAACTACAACACTGTGATGAGGAGGCTTTGCGATGAGCGGAGATGG
TTGTCTGTTGTCAAGCTCTTTGTCGATATAGTCAAGAAGGGAATTGCTCCAAATAGCTGG
ACTTTAAGCATTGTGATCCACAGTCTCTGTAAACTTGGGAGGCTTCATGAAGCACTTTGC
TTGATTGGAAGTGAAGAGTTTGTCGCTGATGTTGTGACATACAATACTTTGATCCGTTAT
CTCAACTTCCTGGGGAAAGCTTATGAGGCCTATCTACTGCTTCATCACATGATCGAGAAA
GGTATTGCTCCCAATGACACCACCTACAGTCTTTTGATTGACTGTCTCTGTAAAGAGGGG
AAATTCTTGGTTGCACTTGGCTGTTTGAACCGATGTATGGAAGGTGGGCTCTCTAAAGCT
GTAGTATCAAGTATTTTACGAGGTCTCATCGCTGGTGGTAAGCTTCGTGAATTGCAAGCA
CTAATCGGATGGATTCTTGGACAAGGTTTCGTATTAGATGTGTATATATACCAGGAATTA
ATCATTTCTTTTTGTAAGAAAGGATACTGTCGAGGTCTTGAAATGTACATAGTGTGTCAT
ATATTGGAAAGAATGATCAGGCTGAGATGA

Peptide Sequence

PEP ID

Zm00001d002771_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:2:22167851:22169500:-1 gene:Zm00001d002771 transcript:Zm00001d002771_T001 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

MPSRSPPIARLLHLRRLSKSARHYLLRFAAIAKEHSDQPPPPPLPSRPRSPHPYDYNRLM
SALAASVDGDGHHPGAGAERALHLLDEMRSLMGRRPDAACFTTAAAAFSSASQPGAALAV
LNAMATDGVMPDAAACTVLVGVYACRLHWFDAAYEVVRWMTANGVALDVVTYSTLISGLC
SAGRVAEALGVLDLMLEEGCQPNAHTYTPILHAYCTSGMIHEAKELLETMIAAGFAPSTA
TYNVLVEALCKACAFNEVDALLEESSAKGWTPDTITYSTYMDGLCKDGRVHKSFALVDKM
LSVGLRPNEITLNILLDGVCRRSTAWAAKCLLECSAEIGWHVNVVNYNTVMRRLCDERRW
LSVVKLFVDIVKKGIAPNSWTLSIVIHSLCKLGRLHEALCLIGSEEFVADVVTYNTLIRY
LNFLGKAYEAYLLLHHMIEKGIAPNDTTYSLLIDCLCKEGKFLVALGCLNRCMEGGLSKA
VVSSILRGLIAGGKLRELQALIGWILGQGFVLDVYIYQELIISFCKKGYCRGLEMYIVCH
ILERMIRLR

Transcript Sequence

Transcript ID

Zm00001d002771_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:22167851:22169500:-1 gene:Zm00001d002771 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ATGCCCTCCCGCTCCCCTCCCATTGCCCGTCTCCTGCATCTACGCCGCCTGTCCAAGTCC
GCTCGACATTACCTACTTCGCTTCGCCGCCATCGCGAAGGAACACTCCGACCAGCCCCCG
CCCCCGCCTCTCCCGTCGCGACCACGGTCCCCGCACCCCTACGACTACAACCGTCTCATG
TCCGCGCTCGCCGCTTCAGTCGACGGTGACGGTCACCACCCAGGCGCCGGTGCCGAGCGG
GCCCTCCACCTGCTCGACGAAATGCGGAGCCTCATGGGGCGCCGCCCCGATGCCGCCTGC
TTCACCACGGCCGCCGCGGCGTTCTCATCGGCGTCTCAGCCGGGAGCCGCGCTCGCCGTG
CTAAACGCCATGGCCACCGATGGCGTCATGCCCGACGCTGCTGCTTGCACTGTGCTCGTC
GGGGTGTACGCCTGCCGCCTGCATTGGTTCGACGCGGCCTATGAGGTCGTCAGGTGGATG
ACGGCGAACGGCGTGGCCCTGGACGTAGTCACCTACTCGACGCTGATATCTGGGCTGTGC
AGCGCCGGGCGGGTGGCTGAGGCGCTTGGCGTGCTGGACCTGATGCTGGAGGAAGGGTGC
CAGCCCAATGCTCACACATATACGCCCATCCTGCACGCCTACTGCACGAGCGGGATGATA
CATGAGGCCAAGGAACTCTTGGAAACGATGATTGCAGCTGGTTTTGCACCGAGCACAGCC
ACTTACAATGTCCTGGTTGAAGCTCTATGCAAGGCTTGTGCTTTCAATGAAGTAGATGCG
CTTCTTGAGGAGAGCAGTGCAAAAGGGTGGACACCGGATACAATCACATACAGTACTTAC
ATGGATGGACTATGCAAAGATGGCAGAGTACATAAGAGCTTTGCATTGGTAGATAAGATG
TTGTCTGTTGGTCTGCGGCCCAATGAGATTACTCTGAATATCCTCCTTGATGGGGTTTGC
CGCAGGTCAACTGCTTGGGCTGCCAAGTGCCTGTTGGAGTGCAGTGCAGAGATTGGATGG
CATGTCAATGTTGTCAACTACAACACTGTGATGAGGAGGCTTTGCGATGAGCGGAGATGG
TTGTCTGTTGTCAAGCTCTTTGTCGATATAGTCAAGAAGGGAATTGCTCCAAATAGCTGG
ACTTTAAGCATTGTGATCCACAGTCTCTGTAAACTTGGGAGGCTTCATGAAGCACTTTGC
TTGATTGGAAGTGAAGAGTTTGTCGCTGATGTTGTGACATACAATACTTTGATCCGTTAT
CTCAACTTCCTGGGGAAAGCTTATGAGGCCTATCTACTGCTTCATCACATGATCGAGAAA
GGTATTGCTCCCAATGACACCACCTACAGTCTTTTGATTGACTGTCTCTGTAAAGAGGGG
AAATTCTTGGTTGCACTTGGCTGTTTGAACCGATGTATGGAAGGTGGGCTCTCTAAAGCT
GTAGTATCAAGTATTTTACGAGGTCTCATCGCTGGTGGTAAGCTTCGTGAATTGCAAGCA
CTAATCGGATGGATTCTTGGACAAGGTTTCGTATTAGATGTGTATATATACCAGGAATTA
ATCATTTCTTTTTGTAAGAAAGGATACTGTCGAGGTCTTGAAATGTACATAGTGTGTCAT
ATATTGGAAAGAATGATCAGGCTGAGATGA