Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d002654_T025
CDS Infomation

cds chromosome:B73_RefGen_v4:2:18312769:18319086:-1 gene:Zm00001d002654 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:naked endosperm1 description: naked endosperm1
Sequence

ATGGCATCGAATTCATCGGCGGCGTTCTTTGGTGTTAGGGATGGGGACCAGCAAGACCAG
ATTAAGCCGCTGATATCACCGCAGCAACAGCTGGCAGCGGCGCTGCCCGCGGCGTCCGGC
CAAGGCGCGCCGCCGGCGCAGCCACCGCCCAAGAAGAAGAGGACTATGCCTGACCCCGAC
GCTGAGGTGATCGCGCTGTCGCCCAAGACGCTTATGGCGACCAACAGGTTCGTGTGCGAG
GTGTGCAACAAGGGGTTCCAGCGCGAGCAGAACCTGCAGCTGCACCGGCGCGGGCACAAC
CTGCCGTGGAAGCTGAAGCAGAAGAACCCGCTACAGGCGCAGCGGCGGCGCGTGTACCTG
TGCCCGGAGCCGACGTGCGTGCACCACGACCCGGCCCGCGCCCTCGGCGACCTGACGGGG
ATCAAGAAGCACTTCTGCCGCAAGCACGGCGAGAAGAAGTGGAAGTGCGACAAGTGCTCC
AAGCGCTACGCCGTGCAGTCGGACTGGAAGGCGCACTCCAAGATCTGCGGCACCCGTGAG
TACCGATGCGACTGCGGCACACTCTTCTCCAGGAGGGACAGCTTCATCACACACCGGGCG
TTCTGCGATGCGCTCGCGCAGGAAAGCGCGCGCCTGCCGCCGACGAGCCTCAGCAGCCTC
ACCAGCCACCTCTACGGCGCCACCAGCACGGGCAACATGGCGCTCAGCCTCTCGCAGGTG
GGCTCCCACCTCACCTCCACTCTCCAGGATGGCCACCACCACCACCCGTCCGCGGAGCTC
CTCCGACTCGGCGCCACGGCCGGCGGCGGCAGCAGCATCGCCGCGCGCCTCGACCACCTC
CTGTCGCCCAACGGTGCATCCGCCTTCCGCCCGCCGCAGGGTCCGCCGTCGTCGGCTTCC
TTCTTCCTCAACGCGGGGGCTTCGGTGGGGCCGGACTTTGGGGACGACGTGGGCAATGGC
CCGCACTCGTTCCTGCAGGGCAACAAGCCTTTCCATGGACTCATGCAGCTGCCCGACCTC
CAAGGCAACGGTGCTGGGGGGCCCGGCGGCTCAGGCCCCAGCCTCTTCAACCTGAGTTTC
TTTGCTAACAATGGCAACAGCTCGGGGTCCAGTCACGAGCATGCAAGCCAGGGGCTCATG
AACAATAATGACCACTTCAACGGCGGAGCAGGTGGAGGCGGCGCTGGGATTTTCGGCGGA
AACTTCGTTGGTGGTGGAGATCAAGTTCCACCGCCCGGGCTCTACAGCGATCAAGCCTCC
ATGCTGCCGCAGATGTCGGCGACAGCTCTGCTCCAGAAGGCGGCGCAGATGGGCGCGACC
TCGAGCGCGAACGGCGGCGCTGCATCCATGTTCCGAGGCTTCGTGGGCTCATCCCCTCAC
GTGCGGCCGGCGACGCCGCACATGGAACAGAGCGACGCGAACCTAAACGACCTGATGAAC
TCGCTCGCTGGAGGTGGTGTCGGCGCCGGAGGAATGTTCGGCAGCAGCAACGGCGCCGGA
GGCCCGGGGATGTTTGATCCGAGGCAGCTGTGTGACATGGAGCACGAGGTGAAGTTCGGC
CATGGTGGCGGAGACATGACGCGGGACTTCCTTGGCGTCGGCGGAGGAGGCATCGTGCGC
GGGATATCGACACCTAGAGGAGACCACCAAAGCAGCAGCGATATGAGCTCCCTGGAGGCC
GAGATGAAGTCGGCCTCGTCCTTCAACGGAGGCAGGATGCCATGA

Peptide Sequence

PEP ID

Zm00001d002654_P025
PEP Infomation

pep chromosome:B73_RefGen_v4:2:18312769:18319086:-1 gene:Zm00001d002654 transcript:Zm00001d002654_T025 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:naked endosperm1 description: naked endosperm1
Sequence

MASNSSAAFFGVRDGDQQDQIKPLISPQQQLAAALPAASGQGAPPAQPPPKKKRTMPDPD
AEVIALSPKTLMATNRFVCEVCNKGFQREQNLQLHRRGHNLPWKLKQKNPLQAQRRRVYL
CPEPTCVHHDPARALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKICGTRE
YRCDCGTLFSRRDSFITHRAFCDALAQESARLPPTSLSSLTSHLYGATSTGNMALSLSQV
GSHLTSTLQDGHHHHPSAELLRLGATAGGGSSIAARLDHLLSPNGASAFRPPQGPPSSAS
FFLNAGASVGPDFGDDVGNGPHSFLQGNKPFHGLMQLPDLQGNGAGGPGGSGPSLFNLSF
FANNGNSSGSSHEHASQGLMNNNDHFNGGAGGGGAGIFGGNFVGGGDQVPPPGLYSDQAS
MLPQMSATALLQKAAQMGATSSANGGAASMFRGFVGSSPHVRPATPHMEQSDANLNDLMN
SLAGGGVGAGGMFGSSNGAGGPGMFDPRQLCDMEHEVKFGHGGGDMTRDFLGVGGGGIVR
GISTPRGDHQSSSDMSSLEAEMKSASSFNGGRMP

Transcript Sequence

Transcript ID

Zm00001d002654_T025
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:18312769:18319086:-1 gene:Zm00001d002654 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:naked endosperm1 description: naked endosperm1
Sequence

CGGGCCAAAGCGACCAGCTGCAGGAAGGAGAAGCAGTGTTGGCGCGTTCGAGCTGGTGGT
GCCAGGATAAATCGGGAGGAAGTGATGGCATCGAATTCATCGGCGGCGTTCTTTGGTGTT
AGGGATGGGGACCAGCAAGACCAGATTAAGCCGCTGATATCACCGCAGCAACAGCTGGCA
GCGGCGCTGCCCGCGGCGTCCGGCCAAGGCGCGCCGCCGGCGCAGCCACCGCCCAAGAAG
AAGAGGACTATGCCTGACCCCGACGCTGAGGTGATCGCGCTGTCGCCCAAGACGCTTATG
GCGACCAACAGGTTCGTGTGCGAGGTGTGCAACAAGGGGTTCCAGCGCGAGCAGAACCTG
CAGCTGCACCGGCGCGGGCACAACCTGCCGTGGAAGCTGAAGCAGAAGAACCCGCTACAG
GCGCAGCGGCGGCGCGTGTACCTGTGCCCGGAGCCGACGTGCGTGCACCACGACCCGGCC
CGCGCCCTCGGCGACCTGACGGGGATCAAGAAGCACTTCTGCCGCAAGCACGGCGAGAAG
AAGTGGAAGTGCGACAAGTGCTCCAAGCGCTACGCCGTGCAGTCGGACTGGAAGGCGCAC
TCCAAGATCTGCGGCACCCGTGAGTACCGATGCGACTGCGGCACACTCTTCTCCAGGAGG
GACAGCTTCATCACACACCGGGCGTTCTGCGATGCGCTCGCGCAGGAAAGCGCGCGCCTG
CCGCCGACGAGCCTCAGCAGCCTCACCAGCCACCTCTACGGCGCCACCAGCACGGGCAAC
ATGGCGCTCAGCCTCTCGCAGGTGGGCTCCCACCTCACCTCCACTCTCCAGGATGGCCAC
CACCACCACCCGTCCGCGGAGCTCCTCCGACTCGGCGCCACGGCCGGCGGCGGCAGCAGC
ATCGCCGCGCGCCTCGACCACCTCCTGTCGCCCAACGGTGCATCCGCCTTCCGCCCGCCG
CAGGGTCCGCCGTCGTCGGCTTCCTTCTTCCTCAACGCGGGGGCTTCGGTGGGGCCGGAC
TTTGGGGACGACGTGGGCAATGGCCCGCACTCGTTCCTGCAGGGCAACAAGCCTTTCCAT
GGACTCATGCAGCTGCCCGACCTCCAAGGCAACGGTGCTGGGGGGCCCGGCGGCTCAGGC
CCCAGCCTCTTCAACCTGAGTTTCTTTGCTAACAATGGCAACAGCTCGGGGTCCAGTCAC
GAGCATGCAAGCCAGGGGCTCATGAACAATAATGACCACTTCAACGGCGGAGCAGGTGGA
GGCGGCGCTGGGATTTTCGGCGGAAACTTCGTTGGTGGTGGAGATCAAGTTCCACCGCCC
GGGCTCTACAGCGATCAAGCCTCCATGCTGCCGCAGATGTCGGCGACAGCTCTGCTCCAG
AAGGCGGCGCAGATGGGCGCGACCTCGAGCGCGAACGGCGGCGCTGCATCCATGTTCCGA
GGCTTCGTGGGCTCATCCCCTCACGTGCGGCCGGCGACGCCGCACATGGAACAGAGCGAC
GCGAACCTAAACGACCTGATGAACTCGCTCGCTGGAGGTGGTGTCGGCGCCGGAGGAATG
TTCGGCAGCAGCAACGGCGCCGGAGGCCCGGGGATGTTTGATCCGAGGCAGCTGTGTGAC
ATGGAGCACGAGGTGAAGTTCGGCCATGGTGGCGGAGACATGACGCGGGACTTCCTTGGC
GTCGGCGGAGGAGGCATCGTGCGCGGGATATCGACACCTAGAGGAGACCACCAAAGCAGC
AGCGATATGAGCTCCCTGGAGGCCGAGATGAAGTCGGCCTCGTCCTTCAACGGAGGCAGG
ATGCCATGACCGACCCATCGGTCGAGCTTATAAACAAGGCATAAGCTCGCGCACAGTAAG
CAAGAGACTTGATCAAGCAGATGCAGTGAGAGAAGAGTAAGGTCATCGTTATATAGTTAT
CAACTGAGTCGCATGAGTGAGTTCATGCATGGATAAAGCTGGCTAGCTTCTTAGCTAGCT
TTCATCATCCGAAGGGACCTTGGGTGAGAGAGAGGCGTCTTTCTCTGACTAATGGAGTAA
GCTAGAGTGCGAGTTGGAC