Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d002641_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:2:17744486:17748716:-1 gene:Zm00001d002641 gene_biotype:protein_coding transcript_biotype:protein_coding description:Transducin/WD40 repeat-like superfamily protein
Sequence

ATGGAAGGGTGCCAACTGCTAGTAGGCTGTAGGATGGAGATGGAGGAGGAAGCGTTCTTT
GACTCGCGAGAGGAGCTCACGGCGTCGCCGGCGCCCAGCCCGGGCCCTGCATTGCCGTGG
TCGGGAAGCCTCGACAGTGTGTGTCAGAGGAGGGAGCGGTTCATGAGAAGCATGGGCCTA
GAGTGCTGCCCGGCTCCCCTGCAGGCCGATGCCGTGGCCACCGTGGGCGATGTCGACAAG
GAGGAAGAGGCTGTGCCGGAATTTGGGAGATCGTGGTCGCAGTCGGATGAGAACGACTGC
TCCATGTCGAGTTGGTCCACGGAGGAGACGAAGAGCTTAGAGGATGGTGTCTCGGATGAC
AATTCTGTCAGTGGATCCAGCCGGGATGATGCTAGCAGCAAGGTGAGCAGGAGTTTCAGT
TCGTTGTCCTTCATCCAGAGGCTCATGAGCCGCAGTGGTAAGCTCTCTGGTGTTCCCAAG
GCGGTCGAGAGGAGGAGAAACGGATGGCTTCGGAGGCTGGGCTTGAGGTCTGGTATCCTC
GATCATGGAGGCGATGAGGCTAGCACCAGCTCCTCAGAGAGTGAGCAAAACAGGGGTGGA
AGGTATGAAAGGGTCAAGGTCCGCAGCTACAGGAAGCGGTCGAAAGAACTGTCAGCAGTT
TATCAAGGCCAAGTGATTAAGGGCCATGATGGTGCCATCCTGGCTATGAAGTTTAGTCCG
GATGGGCAGTTTCTTGCTACTGGAGGGGAAGATGGAGTTGTCAGGGTCTGGGGCGTCGCG
CAGTCTGAGGACTGCAAAATCCCAATGGATGATCCTTCTTGTGTTTACCTCAAAGCTCAT
CGCCAGAGTGGCTTGGGTCCTGTTGATGCTGACAATGAGAAGAAATGCAAAGTTAAGGGC
GTGAAGCAATCTGCAGATTCTGCCTGTGTTGTGATTCCAACAGTGGTGTTCCAGATCTCA
AAGCAACCACTGCATGAGTTCCGTGGTCACTCTGGTGACGTACTGAGTCTGTCATGGTCT
AACAACAAGCATCTACTGTCAGCATCAACAGACAAATCTGTTCGCTTGTGGGAAATTGGA
TCTGCAAACTGCATCACTGTTTTTCCGCACAGCAACTTTGTGACTTGTGTCCAGTTGAAT
CCAACCAATGAGAATCAATTCATCAGTGGATCCATAGATGGCAAAATCCGTGTGTGGGAT
ATTCCCAGATGCAGTGTCATTGATTGGGTGGATATTAGAGACATAATAACAGCGGTTTGC
TATCGACCTGACGGAAAGGGAGCAGTGGTCGGAACCATTACTGGAAATTGTCGATTTTAT
GATGCATCAGATAATCTCCTGAGGTTTGAAACACAAGTTGCACTCAGTGGCAAGAAAAAG
TCTTCTCTTAAAAGAATCACTGCTTTCGAGTTCTCACCAAGCAACCCAAGTAAATTAATG
GTTACCTCTGCTGACTCGAAGGTTAAAATTCTTGAAGGAACCACTGTGACTCAGAATTAT
AGTGGACTCCGTACTGGGTCTTGCCAGTCCTTGGCAACATTCACTCCTGATGGGCAGCAT
ATAGTTTGTGCAAGCGAAGACTCCAATATTTATGTATGGAACCATGAAAACCAAGACGAG
GCTTCACTGAAACATGCGAAAACCATATGGTCCTCAGAGCGCTTCTACTCCAACAATGCA
GCCATCGCAATACCATGGAATGGCCCGAAACCCAGAAACCCGGTCTCTCTGGCCTCCCAA
ATCTTGTCACCACAAGGAGATAACTTGTGGTGCATGAGTAAGGCTGTCAAGTGCAGTTCG
AGTCAGAGCGAAGATTCTGCTATCAACAGTTTTGTGTCAAGGTTTGCTCCTGGTATTTTC
AATTTGAATCAGGAGTTCTCCTCTGAGTCCACTTGCAGAAGTTCAGCGACCTGGCCAGAG
GAAATCCTGCCGTCTCGCTCGATTCGTGCAATTCTGGACGAGTCGCAGTACAAGTTCCTA
AGGAACTGTTTCCAGAGCACACCAAACTCGTGGGGTCAAGTGATAGTCACTGCAGGATGG
GATGGCAAGATCAGGTCGTTCCAGAACTATGGCTTACCGGCGCACCAGTGA

Peptide Sequence

PEP ID

Zm00001d002641_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:2:17744486:17748716:-1 gene:Zm00001d002641 transcript:Zm00001d002641_T002 gene_biotype:protein_coding transcript_biotype:protein_coding description:Transducin/WD40 repeat-like superfamily protein
Sequence

MEGCQLLVGCRMEMEEEAFFDSREELTASPAPSPGPALPWSGSLDSVCQRRERFMRSMGL
ECCPAPLQADAVATVGDVDKEEEAVPEFGRSWSQSDENDCSMSSWSTEETKSLEDGVSDD
NSVSGSSRDDASSKVSRSFSSLSFIQRLMSRSGKLSGVPKAVERRRNGWLRRLGLRSGIL
DHGGDEASTSSSESEQNRGGRYERVKVRSYRKRSKELSAVYQGQVIKGHDGAILAMKFSP
DGQFLATGGEDGVVRVWGVAQSEDCKIPMDDPSCVYLKAHRQSGLGPVDADNEKKCKVKG
VKQSADSACVVIPTVVFQISKQPLHEFRGHSGDVLSLSWSNNKHLLSASTDKSVRLWEIG
SANCITVFPHSNFVTCVQLNPTNENQFISGSIDGKIRVWDIPRCSVIDWVDIRDIITAVC
YRPDGKGAVVGTITGNCRFYDASDNLLRFETQVALSGKKKSSLKRITAFEFSPSNPSKLM
VTSADSKVKILEGTTVTQNYSGLRTGSCQSLATFTPDGQHIVCASEDSNIYVWNHENQDE
ASLKHAKTIWSSERFYSNNAAIAIPWNGPKPRNPVSLASQILSPQGDNLWCMSKAVKCSS
SQSEDSAINSFVSRFAPGIFNLNQEFSSESTCRSSATWPEEILPSRSIRAILDESQYKFL
RNCFQSTPNSWGQVIVTAGWDGKIRSFQNYGLPAHQ

Transcript Sequence

Transcript ID

Zm00001d002641_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:17744486:17748716:-1 gene:Zm00001d002641 gene_biotype:protein_coding transcript_biotype:protein_coding description:Transducin/WD40 repeat-like superfamily protein
Sequence

ACAGAAGAACAAAGGAAAGATAAAAAGAAAGGAAAGTGTGAGAGGCGTCATCAGAGGGTG
TGAGATGAACCAACCCAGCAGCAAGAAATGATTAAGAGGCAAGAGGCAAATCTGCGACAG
TGCATTGTTTTAGCGGGAACTGTGCAGTATTTTCCTCGTTTTTTTCCCTCTGAGCAGCAC
AGTGCATCTTCAGAAATTTATTTTTGCGTCCGTCCTCCAAATCTGGCGATGGTGATGGGG
GACTCGGACGGGACTGGGACCCCCACACACCCAGCACGGCTGGCCAGCTCCTCTCCTCCT
CCTCCTCCGCCTCCCACGTCCGTCGTAATAAATCGCCCCGTCGTCTCCAATTCCCCCCCT
CCTCTCCTTTCTCCCCGCCCGCGTGAGATCGGCTCGAATCCAATCCTCTCCAATAATACG
CACCGGCACCCATTTGCGCCATGCTGCCGCGGCCGGCCACCACGACGAGCCAAGAACACG
CGCGGCATCCCTGAGCCACCCACCCAGGCTTACCAAAACGGATTCCTTTTCCCTCTTGGA
TCCCAGCCGCTCCCAAGCGTGCGCGCGAATTCTCTGCTTGCCTCGCCCAGGTGAGCTTCT
CCCCCCACCCCCCACCCCTGCCATCAGTTTCTTCCTTTTCTAATCCCTCATTATTCCCCC
TCTACCATCATCAATCAATCTATTGGTTTCGACGAGATATGTGGTGGTGAATTCGGCGGG
TCTTGAGAGGGGGAAGGGATTTTTAAAAAAAAAACCCTGAAATTTTGTCAGCGGTTCCTT
GGCCTGGCTGCCCGCTTTAATAATGGCCGCGCGGCTGGTTGGCTTGCCAGGCCAGATGCA
TTGCTCAGGAGGCAGGAGCGCTTGGGCCGTGCGAGCTGCGGGATTTGGGAGATGCGTGCA
GTTGAATGCGTGGGATTCGCCGTGATTTGTTTATGCTGATCGCCCTCTCCTCCCGACCCG
TGCTCCCTCCGCGTCCGCTCTCTCCCTTTTTCTCGTCCCCAGTTGCCGCCGAGCCAATTC
AGCGCCGCTTTACTGTTATATAAGCCGCGCCTCCGCACCGGACCAGGGCTCTGAGATGTG
TTTATCTTTCTCTCCTCGCAGCGCCGTGTGCTCTTGTGCTGAAGATCCATCCCATCCATG
GAAGGGTGCCAACTGCTAGTAGGCTGTAGGATGGAGATGGAGGAGGAAGCGTTCTTTGAC
TCGCGAGAGGAGCTCACGGCGTCGCCGGCGCCCAGCCCGGGCCCTGCATTGCCGTGGTCG
GGAAGCCTCGACAGTGTGTGTCAGAGGAGGGAGCGGTTCATGAGAAGCATGGGCCTAGAG
TGCTGCCCGGCTCCCCTGCAGGCCGATGCCGTGGCCACCGTGGGCGATGTCGACAAGGAG
GAAGAGGCTGTGCCGGAATTTGGGAGATCGTGGTCGCAGTCGGATGAGAACGACTGCTCC
ATGTCGAGTTGGTCCACGGAGGAGACGAAGAGCTTAGAGGATGGTGTCTCGGATGACAAT
TCTGTCAGTGGATCCAGCCGGGATGATGCTAGCAGCAAGGTGAGCAGGAGTTTCAGTTCG
TTGTCCTTCATCCAGAGGCTCATGAGCCGCAGTGGTAAGCTCTCTGGTGTTCCCAAGGCG
GTCGAGAGGAGGAGAAACGGATGGCTTCGGAGGCTGGGCTTGAGGTCTGGTATCCTCGAT
CATGGAGGCGATGAGGCTAGCACCAGCTCCTCAGAGAGTGAGCAAAACAGGGGTGGAAGG
TATGAAAGGGTCAAGGTCCGCAGCTACAGGAAGCGGTCGAAAGAACTGTCAGCAGTTTAT
CAAGGCCAAGTGATTAAGGGCCATGATGGTGCCATCCTGGCTATGAAGTTTAGTCCGGAT
GGGCAGTTTCTTGCTACTGGAGGGGAAGATGGAGTTGTCAGGGTCTGGGGCGTCGCGCAG
TCTGAGGACTGCAAAATCCCAATGGATGATCCTTCTTGTGTTTACCTCAAAGCTCATCGC
CAGAGTGGCTTGGGTCCTGTTGATGCTGACAATGAGAAGAAATGCAAAGTTAAGGGCGTG
AAGCAATCTGCAGATTCTGCCTGTGTTGTGATTCCAACAGTGGTGTTCCAGATCTCAAAG
CAACCACTGCATGAGTTCCGTGGTCACTCTGGTGACGTACTGAGTCTGTCATGGTCTAAC
AACAAGCATCTACTGTCAGCATCAACAGACAAATCTGTTCGCTTGTGGGAAATTGGATCT
GCAAACTGCATCACTGTTTTTCCGCACAGCAACTTTGTGACTTGTGTCCAGTTGAATCCA
ACCAATGAGAATCAATTCATCAGTGGATCCATAGATGGCAAAATCCGTGTGTGGGATATT
CCCAGATGCAGTGTCATTGATTGGGTGGATATTAGAGACATAATAACAGCGGTTTGCTAT
CGACCTGACGGAAAGGGAGCAGTGGTCGGAACCATTACTGGAAATTGTCGATTTTATGAT
GCATCAGATAATCTCCTGAGGTTTGAAACACAAGTTGCACTCAGTGGCAAGAAAAAGTCT
TCTCTTAAAAGAATCACTGCTTTCGAGTTCTCACCAAGCAACCCAAGTAAATTAATGGTT
ACCTCTGCTGACTCGAAGGTTAAAATTCTTGAAGGAACCACTGTGACTCAGAATTATAGT
GGACTCCGTACTGGGTCTTGCCAGTCCTTGGCAACATTCACTCCTGATGGGCAGCATATA
GTTTGTGCAAGCGAAGACTCCAATATTTATGTATGGAACCATGAAAACCAAGACGAGGCT
TCACTGAAACATGCGAAAACCATATGGTCCTCAGAGCGCTTCTACTCCAACAATGCAGCC
ATCGCAATACCATGGAATGGCCCGAAACCCAGAAACCCGGTCTCTCTGGCCTCCCAAATC
TTGTCACCACAAGGAGATAACTTGTGGTGCATGAGTAAGGCTGTCAAGTGCAGTTCGAGT
CAGAGCGAAGATTCTGCTATCAACAGTTTTGTGTCAAGGTTTGCTCCTGGTATTTTCAAT
TTGAATCAGGAGTTCTCCTCTGAGTCCACTTGCAGAAGTTCAGCGACCTGGCCAGAGGAA
ATCCTGCCGTCTCGCTCGATTCGTGCAATTCTGGACGAGTCGCAGTACAAGTTCCTAAGG
AACTGTTTCCAGAGCACACCAAACTCGTGGGGTCAAGTGATAGTCACTGCAGGATGGGAT
GGCAAGATCAGGTCGTTCCAGAACTATGGCTTACCGGCGCACCAGTGAACAACAGCTGGA
GCATCTGCTGAAACTACACCGGCAGTTTTGGCACCTCACATGGCGTGTGGTTTGTTGGTA
CAAGACATCACATGCTCAGTGCTCCTCCTGCTGAATTGTACATGGACCAGTGTTGTACAT
AATCAACCTGGTGGTCCTTTGAGATCTCCGCGTCAGCGGTTGTTCATGGCAGGACCCGTG
GATTGTACCTTTTTGTAGAAATTTTTTGTGTGTAGATCAGATCTGACTCTCTCCCTTTGC
CCCCCCTTATCAATTGCTCATTGATATATATACTACAGAAATGTTAGTCTCAGCTGAGTG
TAAGTTCCCCTCCCATTGTATTGCGGGAACAGCCAGATATATATATGTGCCACTCAAGTA
TACAAAATTCTTTCATTTTTTTTT