Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d002540_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:2:14993653:14998930:-1 gene:Zm00001d002540 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:calcium dependent protein kinase5 description: calcium dependent protein kinase5
Sequence

ATGGGCAACGCATGCAGCGGCGCCCTTAGATCCAAGTACCTGCACAGCTTCAAGCACGCC
GCGTCGCAGCGCCACGACTCCGAGTACAGCGCCAGCGCCGACGACTCGCCCAGGAAGCCC
ACACCGCCCGCCACCACGGACGCCCACGCGCCGGCGCCGCCCGCCGCCGCCATGAGGCGC
GGCGCGGCTGGCGCGACGCCGGACCTCGGGTCCGTGCTCGGCCACCCAACCCCCAACCTC
CGCGACCTCTACGCGCTCGGCAGGAAGCTCGGGCAGGGGCAGTTCGGCACCACCTACCTC
TGCACCGAGCTCGCCACGGGGATCGACTACGCCTGCAAGTCCATCTCCAAGCGCAAGCTC
ATCACCAAGGAGGACGTCGACGACGTGCGCCGCGAGATCCAGATCATGCACCACCTATCC
GGCCACAAGAACGTCGTCGCTATCAAGGGCGCGTACGAGGACCAGGTCTACGTCCACATC
GTCATGGAGCTCTGTGCCGGGGGCGAGCTCTTCGACCGGATCATACAGCGCGGACACTAC
AGCGAGCGCAAGGCCGCCGCGCTCACAAGGATCATCGTCGGGGTCGTCGAGGCCTGCCAC
TCGCTCGGGGTCATGCACCGGGACCTCAAGCCCGAGAACTTCCTGCTCGCCAACAGGGAC
GATGACCTCTCGCTCAAGGCCATCGATTTCGGTCTCTCTGTCTTCTTCAAGCCTGGTCAA
GTTTTCACCGATGTAGTTGGTAGCCCATATTATGTAGCTCCAGAAGTTCTGTTGAAAAGT
TATGGACCCGCAGCTGATGTATGGACAGCCGGTGTCATTCTTTACATTCTACTGAGTGGT
GTGCCTCCATTTTGGGCAGAAACACAACAAGGAATATTTGATGCTGTATTGAAGGGTGCC
ATTGATTTTGATTCTGATCCGTGGCCTGTCATATCTGATAGTGCAAAAGATCTTATCAGA
CGAATGCTGAATCCTCGCTCTGCCGAGCGCTTAACAGCACATGAAGTTCTATGCCATCCA
TGGATTCGTGATCATGGAGTAGCTCCTGACCGTCCACTGGATCCAGCTGTCTTATCTCGC
ATTAAGCAATTCTCTGCAATGAATAAGTTGAAGAAAATGGCTTTACGAGTAATAGCTGAG
AGCCTATCAGAAGAGGAAATTGCGGGGTTGAAGGAAATGTTCCAGATCATGGACACTGAC
AACAGTGGCGCAATCACTTATGATGAGCTAAAAGAAGGATTGAGAAAATATGGCTCCACA
CTAAAGGACACTGAGATTCGTGATCTTATGGAAGCAGCTGATATTGACAACAGTGGAACA
ATTGACTACATAGAATTCATTGCTGCAACTTTGCATCTCAATAAGCTGGAGCGTGAGGAA
CATCTCGTGGCAGCCTTTTCATATTTCGACAAAGATGGTAGTGGCTATATCACAGTGGAC
GAACTACAGCAAGCTTGCAAAGAGCATAACATGCCGGATGCTTTTCTTGATGATGTCATC
AACGAAGCTGATCAGGACAATGATGGCCGCATTGACTATGGAGAATTTGTTGCCATGATG
ACCAAGGGCAATATGGGAGTCGGTCGAAGAACAATGAGAAACAGCTTGAATATCAGCATG
AGGGACGCACCTGGTGCGTTCTGA

Peptide Sequence

PEP ID

Zm00001d002540_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:2:14993653:14998930:-1 gene:Zm00001d002540 transcript:Zm00001d002540_T002 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:calcium dependent protein kinase5 description: calcium dependent protein kinase5
Sequence

MGNACSGALRSKYLHSFKHAASQRHDSEYSASADDSPRKPTPPATTDAHAPAPPAAAMRR
GAAGATPDLGSVLGHPTPNLRDLYALGRKLGQGQFGTTYLCTELATGIDYACKSISKRKL
ITKEDVDDVRREIQIMHHLSGHKNVVAIKGAYEDQVYVHIVMELCAGGELFDRIIQRGHY
SERKAAALTRIIVGVVEACHSLGVMHRDLKPENFLLANRDDDLSLKAIDFGLSVFFKPGQ
VFTDVVGSPYYVAPEVLLKSYGPAADVWTAGVILYILLSGVPPFWAETQQGIFDAVLKGA
IDFDSDPWPVISDSAKDLIRRMLNPRSAERLTAHEVLCHPWIRDHGVAPDRPLDPAVLSR
IKQFSAMNKLKKMALRVIAESLSEEEIAGLKEMFQIMDTDNSGAITYDELKEGLRKYGST
LKDTEIRDLMEAADIDNSGTIDYIEFIAATLHLNKLEREEHLVAAFSYFDKDGSGYITVD
ELQQACKEHNMPDAFLDDVINEADQDNDGRIDYGEFVAMMTKGNMGVGRRTMRNSLNISM
RDAPGAF

Transcript Sequence

Transcript ID

Zm00001d002540_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:14993653:14998930:-1 gene:Zm00001d002540 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:calcium dependent protein kinase5 description: calcium dependent protein kinase5
Sequence

GTCCCCGTTAAATCCCTGCTCGCCCCCGGTCCGCGACCCCGACCCAACCCGTTTGTGTCG
TAGGCGGTTTGCACTAGCGTTTCCGTGAGGTGGGCGAAGGCGTCCGTGACCGACCGACCG
ACCGGAGCTTCATGCGCCAGGGGCGGCGGCTTCACCCCGTCGTTTGATGGGCAACGCATG
CAGCGGCGCCCTTAGATCCAAGTACCTGCACAGCTTCAAGCACGCCGCGTCGCAGCGCCA
CGACTCCGAGTACAGCGCCAGCGCCGACGACTCGCCCAGGAAGCCCACACCGCCCGCCAC
CACGGACGCCCACGCGCCGGCGCCGCCCGCCGCCGCCATGAGGCGCGGCGCGGCTGGCGC
GACGCCGGACCTCGGGTCCGTGCTCGGCCACCCAACCCCCAACCTCCGCGACCTCTACGC
GCTCGGCAGGAAGCTCGGGCAGGGGCAGTTCGGCACCACCTACCTCTGCACCGAGCTCGC
CACGGGGATCGACTACGCCTGCAAGTCCATCTCCAAGCGCAAGCTCATCACCAAGGAGGA
CGTCGACGACGTGCGCCGCGAGATCCAGATCATGCACCACCTATCCGGCCACAAGAACGT
CGTCGCTATCAAGGGCGCGTACGAGGACCAGGTCTACGTCCACATCGTCATGGAGCTCTG
TGCCGGGGGCGAGCTCTTCGACCGGATCATACAGCGCGGACACTACAGCGAGCGCAAGGC
CGCCGCGCTCACAAGGATCATCGTCGGGGTCGTCGAGGCCTGCCACTCGCTCGGGGTCAT
GCACCGGGACCTCAAGCCCGAGAACTTCCTGCTCGCCAACAGGGACGATGACCTCTCGCT
CAAGGCCATCGATTTCGGTCTCTCTGTCTTCTTCAAGCCTGGTCAAGTTTTCACCGATGT
AGTTGGTAGCCCATATTATGTAGCTCCAGAAGTTCTGTTGAAAAGTTATGGACCCGCAGC
TGATGTATGGACAGCCGGTGTCATTCTTTACATTCTACTGAGTGGTGTGCCTCCATTTTG
GGCAGAAACACAACAAGGAATATTTGATGCTGTATTGAAGGGTGCCATTGATTTTGATTC
TGATCCGTGGCCTGTCATATCTGATAGTGCAAAAGATCTTATCAGACGAATGCTGAATCC
TCGCTCTGCCGAGCGCTTAACAGCACATGAAGTTCTATGCCATCCATGGATTCGTGATCA
TGGAGTAGCTCCTGACCGTCCACTGGATCCAGCTGTCTTATCTCGCATTAAGCAATTCTC
TGCAATGAATAAGTTGAAGAAAATGGCTTTACGAGTAATAGCTGAGAGCCTATCAGAAGA
GGAAATTGCGGGGTTGAAGGAAATGTTCCAGATCATGGACACTGACAACAGTGGCGCAAT
CACTTATGATGAGCTAAAAGAAGGATTGAGAAAATATGGCTCCACACTAAAGGACACTGA
GATTCGTGATCTTATGGAAGCAGCTGATATTGACAACAGTGGAACAATTGACTACATAGA
ATTCATTGCTGCAACTTTGCATCTCAATAAGCTGGAGCGTGAGGAACATCTCGTGGCAGC
CTTTTCATATTTCGACAAAGATGGTAGTGGCTATATCACAGTGGACGAACTACAGCAAGC
TTGCAAAGAGCATAACATGCCGGATGCTTTTCTTGATGATGTCATCAACGAAGCTGATCA
GGACAATGATGGCCGCATTGACTATGGAGAATTTGTTGCCATGATGACCAAGGGCAATAT
GGGAGTCGGTCGAAGAACAATGAGAAACAGCTTGAATATCAGCATGAGGGACGCACCTGG
TGCGTTCTGAGACTTAACACGATGTACAGCTTGTTGCTTGGCTACTTCCTGCCTTGCTGC
CCTACGAAACCTTCTGCATTTTTTCAAGATGTTGTCAAGTGTCTGTGTGGATGTGTTTTT
CTGGGGATTCTGATTCAACTCTGGTGATTGATTCCATGAAATGCATAACAAGATGCCCAT
GTTACGCAAGAAGCCAGATTGTAAATGCTGCTGCCCCTTTGACTCTCAGAAACACTAATG
CTCAGTGAAAAGAAATCGCTCCCTATTGATTGATGGCATCCGTTCTTGGATGCACGCTGT
ATCTCAAAGCAATGTGTTGCTCCGTTTGGATGAACATGTACTCAATATACTGTTTCC