Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d002539_T001
CDS Infomation	cds chromosome:B73_RefGen_v4:2:14990724:14993381:1 gene:Zm00001d002539 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein
Sequence	ATGGTGGCGTCCCCATGGCCGTCACCGCCGTCTCCTCCTCCTCCGGCGGTTGCCTCCCAC ATGGCGGTGACGCAGGCGTTTGCCGACGCGCTGCGTTCGTGCGGTGCGCGCGGCGCGCTC GCCGGCGCCCGCGCGTTGCACGGTCGCCTCGTCGCCGTGGGCCTCGCGTCCGCCGTCTTC CTACAGAACACGCTCCTCCATGCCTACCTCTCCTGCGGAGCCCTCTCCGACGCCCGACGC TTGCTTCTGATGGACATCGCCCATCCTAATGTCATCACCCACAACGTCATGCTGAATGGG TACGCCAAGCTCGGCCGACTGAGCGATGCCGTGGAGCTGTTCGGTAGAATGCCCGCGCGA GACGTGGCTTCGTGGAACACGCTCATGTCCGGATACTTTCAGAGCCGACAGTACTTGGTT TCTTTGGAAACCTTTCTGTCCATGCACCGAAGTGGTGATTCGTGGCCAAATGCATTCACA TTAGCTTGTGCCATGAAGTCTTGTGGCGCCCTTGGATGGCACAGTTTGGCGCTGCAGCTG CTTGCGATGGTTCAGAAGTTCGATTCTCAGGATGATAGTGAGGTAGCAGCTGCCCTTGTC GACATGTTTGTGAGATGTGGAGCTGTGGATTTAGCTTCAAGGTTGTTTGTTCGCATTAAA GAACCCACTATGTTCTGTCGGAACAGTATGCTAGCGGGATATGTCAAGACATATGGTGTC GATCATGCTCTTGAGCTTTTTGATAGCATGCCTGAACGTGATGTTGTTTCGTGGAACATG ATGGTATCAGCATTGTCTCAGAGTGGCCGAGTCAGAGAAGCCCTTGATATGGTTGTAGAC ATGCAAAGCAAAGGGGTGCGTCTTGATTCAACAACATACACTAGTTCGCTTACTGCATGT GCTAGATTATCTTCTTTAAGATGGGGTAAGCAACTTCATGCTCAGGTGATTCGGAACCTA CCGCACATTGATCCATATGTTGCAAGTGCTCTTGTTGAACTGTATGCAAAATCTGGCTGT TTCAAGGAAGCTAAGGGGGTCTTCAACTCTTTACATGACCGTAACAATGTGGCTTGGACA GTTCTCATCTCAGGATTCTTGCAGTATGGGTGTTTCACTGAATCTGTTGAATTGTTCAAC CAGATGAGAGCTGAGTTGATGACACTTGATCAGTTCGCTTTGGCTACTCTTATAAGTGGC TGCTGCAGCAGGATGGATTTGTGCCTTGGGAGGCAACTACATTCACTTTGTCTGAAAAGT GGGCAGATTCAAGCTGTAGTCGTCTCCAATTCTCTCATCTCCATGTATGCAAAGTGCGAC AATCTCCAGAGTGCTGAAGCTATATTCAGATTTATGAATGAAAAGGACATTGTATCATGG ACAAGCATGATAACTGCATATTCTCAAGTAGGAAACGTTGCAAAAGCTCGTGAGTTCTTT GATGGCATGTCAGAAAAGAATGTCATTACATGGAATGCTATGTTGGGAGCATATATACAG CATGGAGCTGAGGAAGATGGCCTCAGGATGTATAAGGTCATGCTAAGTGAGGAGTATGTT AGACCTGACTGGGTTACCTATGTCACATTGTTCAAAGGCTGTGCAGACTTAGGTGCAAAC AAACTTGGAGATCAGATTATTGGTCGCACTGTAAAGGTTGGTCTCATTATAGACACCTCT GTTGCGAATGCAGTCATAACAATGTATTCCAAGTGCGGAAGGATTTTAGAAGCTCGAAAG GTATTTGACTTCCTGAACGTGAAGGATATTGTATCTTGGAATGCCATGATCACTGGTTAT TCACAGCACGGAATGGGAAAACAAGCCATAGAGATCTTTGATGACATACTTAAAAGAGGT GCAAAGCCAGACTACATAAGCTATGTTGCAGTTCTGTCAGGCTGCAGCCACTCTGGACTC GTGCAGGAGGGGAAATTTTATTTTGATATGATGAAGAGGGCCCATAACATATCTCCAGGT TTGGAGCATTTCTCATGCATGGTAGACCTTCTTGGCCGTGCCGGGCATCTGACGGAAGCC AAGGATCTCATTGACGATATGCCCATGAAACCAACCGCTGAGGTTTGGGGAGCTCTTCTT AGCGCCTGCAAGATACATGGCAACAATGAGCTCGCGGAACTTGCAGCGAAACATGTGTTT GAGCTGGACTCACCTGATTCTGGGAGCTACATGCTTATGGCGAAGATTTATGCCGATGCC GGGAAATCAGATGACTCTGCGCAGATAAGGAAGCTGATGAGGGACAAGGGAATAAAAAAG AACCCGGGCTATAGCTGGATGGAGGTTGACAACAAGGTCCACGTCTTCAAAGCGGATGAC GTGAGCCATCCCCAAGTTCTCGCGATTCGGAAGAAGCTAGATGAGCTCATGGAGAAGATC GCGCGCCTAGGGTACGTGAGGACAGACTCCACGCGCTCCGAGATTCACCACAGCGAGAAG CTAGCTGTAGCATTCGGGCTCATGACCTTGCCCACCTGGATGCCGATCCACATCATGAAG AATCTGCGCATTTGCGGCGACTGTCACACTGTGATCAAGCTGATATCCACAGTGACTGGC CGAGAATTCGTGATTCGAGATGCCGTGCGATTCCACCACTTCAATGGTGGTTCCTGCTCT TGCGGGGATTACTGGTGA

Peptide Sequence

PEP ID	Zm00001d002539_P001
PEP Infomation	pep chromosome:B73_RefGen_v4:2:14990724:14993381:1 gene:Zm00001d002539 transcript:Zm00001d002539_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein
Sequence	MVASPWPSPPSPPPPAVASHMAVTQAFADALRSCGARGALAGARALHGRLVAVGLASAVF LQNTLLHAYLSCGALSDARRLLLMDIAHPNVITHNVMLNGYAKLGRLSDAVELFGRMPAR DVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLACAMKSCGALGWHSLALQL LAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGV DHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTAC ARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWT VLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKS GQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFF DGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGAN KLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGY SQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRAHNISPG LEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHGNNELAELAAKHVF ELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVDNKVHVFKADD VSHPQVLAIRKKLDELMEKIARLGYVRTDSTRSEIHHSEKLAVAFGLMTLPTWMPIHIMK NLRICGDCHTVIKLISTVTGREFVIRDAVRFHHFNGGSCSCGDYW

Transcript Sequence

Transcript ID	Zm00001d002539_T001
Transcript Infomation	cdna chromosome:B73_RefGen_v4:2:14990724:14993381:1 gene:Zm00001d002539 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein
Sequence	ATGGTGGCGTCCCCATGGCCGTCACCGCCGTCTCCTCCTCCTCCGGCGGTTGCCTCCCAC ATGGCGGTGACGCAGGCGTTTGCCGACGCGCTGCGTTCGTGCGGTGCGCGCGGCGCGCTC GCCGGCGCCCGCGCGTTGCACGGTCGCCTCGTCGCCGTGGGCCTCGCGTCCGCCGTCTTC CTACAGAACACGCTCCTCCATGCCTACCTCTCCTGCGGAGCCCTCTCCGACGCCCGACGC TTGCTTCTGATGGACATCGCCCATCCTAATGTCATCACCCACAACGTCATGCTGAATGGG TACGCCAAGCTCGGCCGACTGAGCGATGCCGTGGAGCTGTTCGGTAGAATGCCCGCGCGA GACGTGGCTTCGTGGAACACGCTCATGTCCGGATACTTTCAGAGCCGACAGTACTTGGTT TCTTTGGAAACCTTTCTGTCCATGCACCGAAGTGGTGATTCGTGGCCAAATGCATTCACA TTAGCTTGTGCCATGAAGTCTTGTGGCGCCCTTGGATGGCACAGTTTGGCGCTGCAGCTG CTTGCGATGGTTCAGAAGTTCGATTCTCAGGATGATAGTGAGGTAGCAGCTGCCCTTGTC GACATGTTTGTGAGATGTGGAGCTGTGGATTTAGCTTCAAGGTTGTTTGTTCGCATTAAA GAACCCACTATGTTCTGTCGGAACAGTATGCTAGCGGGATATGTCAAGACATATGGTGTC GATCATGCTCTTGAGCTTTTTGATAGCATGCCTGAACGTGATGTTGTTTCGTGGAACATG ATGGTATCAGCATTGTCTCAGAGTGGCCGAGTCAGAGAAGCCCTTGATATGGTTGTAGAC ATGCAAAGCAAAGGGGTGCGTCTTGATTCAACAACATACACTAGTTCGCTTACTGCATGT GCTAGATTATCTTCTTTAAGATGGGGTAAGCAACTTCATGCTCAGGTGATTCGGAACCTA CCGCACATTGATCCATATGTTGCAAGTGCTCTTGTTGAACTGTATGCAAAATCTGGCTGT TTCAAGGAAGCTAAGGGGGTCTTCAACTCTTTACATGACCGTAACAATGTGGCTTGGACA GTTCTCATCTCAGGATTCTTGCAGTATGGGTGTTTCACTGAATCTGTTGAATTGTTCAAC CAGATGAGAGCTGAGTTGATGACACTTGATCAGTTCGCTTTGGCTACTCTTATAAGTGGC TGCTGCAGCAGGATGGATTTGTGCCTTGGGAGGCAACTACATTCACTTTGTCTGAAAAGT GGGCAGATTCAAGCTGTAGTCGTCTCCAATTCTCTCATCTCCATGTATGCAAAGTGCGAC AATCTCCAGAGTGCTGAAGCTATATTCAGATTTATGAATGAAAAGGACATTGTATCATGG ACAAGCATGATAACTGCATATTCTCAAGTAGGAAACGTTGCAAAAGCTCGTGAGTTCTTT GATGGCATGTCAGAAAAGAATGTCATTACATGGAATGCTATGTTGGGAGCATATATACAG CATGGAGCTGAGGAAGATGGCCTCAGGATGTATAAGGTCATGCTAAGTGAGGAGTATGTT AGACCTGACTGGGTTACCTATGTCACATTGTTCAAAGGCTGTGCAGACTTAGGTGCAAAC AAACTTGGAGATCAGATTATTGGTCGCACTGTAAAGGTTGGTCTCATTATAGACACCTCT GTTGCGAATGCAGTCATAACAATGTATTCCAAGTGCGGAAGGATTTTAGAAGCTCGAAAG GTATTTGACTTCCTGAACGTGAAGGATATTGTATCTTGGAATGCCATGATCACTGGTTAT TCACAGCACGGAATGGGAAAACAAGCCATAGAGATCTTTGATGACATACTTAAAAGAGGT GCAAAGCCAGACTACATAAGCTATGTTGCAGTTCTGTCAGGCTGCAGCCACTCTGGACTC GTGCAGGAGGGGAAATTTTATTTTGATATGATGAAGAGGGCCCATAACATATCTCCAGGT TTGGAGCATTTCTCATGCATGGTAGACCTTCTTGGCCGTGCCGGGCATCTGACGGAAGCC AAGGATCTCATTGACGATATGCCCATGAAACCAACCGCTGAGGTTTGGGGAGCTCTTCTT AGCGCCTGCAAGATACATGGCAACAATGAGCTCGCGGAACTTGCAGCGAAACATGTGTTT GAGCTGGACTCACCTGATTCTGGGAGCTACATGCTTATGGCGAAGATTTATGCCGATGCC GGGAAATCAGATGACTCTGCGCAGATAAGGAAGCTGATGAGGGACAAGGGAATAAAAAAG AACCCGGGCTATAGCTGGATGGAGGTTGACAACAAGGTCCACGTCTTCAAAGCGGATGAC GTGAGCCATCCCCAAGTTCTCGCGATTCGGAAGAAGCTAGATGAGCTCATGGAGAAGATC GCGCGCCTAGGGTACGTGAGGACAGACTCCACGCGCTCCGAGATTCACCACAGCGAGAAG CTAGCTGTAGCATTCGGGCTCATGACCTTGCCCACCTGGATGCCGATCCACATCATGAAG AATCTGCGCATTTGCGGCGACTGTCACACTGTGATCAAGCTGATATCCACAGTGACTGGC CGAGAATTCGTGATTCGAGATGCCGTGCGATTCCACCACTTCAATGGTGGTTCCTGCTCT TGCGGGGATTACTGGTGA