Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d002413_T006
CDS Infomation

cds chromosome:B73_RefGen_v4:2:12227140:12234523:1 gene:Zm00001d002413 gene_biotype:protein_coding transcript_biotype:protein_coding description:Villin-4
Sequence

ATGGTATGGCGTATTGAGAATTTTAAGCCAGTTCCTGTGCCAACATCATTACATGGAAAA
TTTTATATGGGTGATTCATATATCATCTTGAAGACAACAGCTTTAAAAAATGGTTCCTTT
CGCCATGACATCCATTATTGGCTTGGTAAAGACACTAGTCAGGATGAGGCTGGAACTGCT
GCAATTTTAACTGTGGAGCTTGATGCTGCGCTTGGAGGACGTGCTGTCCAGTACCGGGAA
TCACAAGGCAATGAAACTGAAAGGTTTCTCTCATATTTTAGGCCTTGCATCATGCCACAA
TCAGGAGGGGTAGTTTCTGGGTTCAACCATGTAGAAGTCAATGATCAGAAGCATGTTACC
CGATTATATGTGTGCCGAGGAAAACATGTTGTCCATGTTAAAGAGGTTCCTTTTACTCGT
TCATCCCTTAACCATGAGGACATATTTATTTTGGATACCAAGTCAAAAATTTTCCAGTTC
AATGGTTCTAACTCATGCATTCAGGAGAGAGCAAAAGCTCTTGAAGTTGTACAGTATATC
AGAGATACTTTCCATGAGGGCAAGTGTGAAGTTGCAGGGGTTGAGGATGGAAAATTGATG
GCTGATGCAGAAGCTGGTGAATTTTGGGCTTTGTTTGGTGGCTTCGCTCCTCTTCCAAAG
AAGACACTTTCAGAGGATAACGGGGAAGACAAGGAAATCATCATCAAATTGATGTGCATC
AACCAAGGAAAATTGGAGCAAATTAATTTTGAATCCTTGGCGCGTGAGTTACTTGAGCCA
AACAAATGCTACTTGCTTGACTGTGGTGCTGAAATATATGTATGGATGGGCAGAAGTGCT
TCTTTGCAAGAAAGAAAGGGCGCGAGCAAAATTGCTGAGAAACTACTCATTGATGCTAGT
CGAACAAAATCACATGTTATCAAAGTGATCGAGGGATTCGAGACAGTCACGTTCAAGTCA
AAATTTATTGAGTGGCCACCCACACCTGATTTGAAGTTATCATCTGAGGATGGAAGAGTC
AAAGTTGCAGCCCTCCTCAAATCTCAAGGATTAGATGTTAAAGGCTTGATGAAAACTGCA
CCTGTAAAAGAAGAACCCCGGCCTTACATTGATTGCACAGGTCATTTGCAGGTATGGAGG
GTTAATGGAAATGGCAAGACTCTTCTTTCATGTGCTGACCAATCAAAATTTTACACTGGA
GATTGTTACATTTTTCAATACACATATAGTGGAGATGATAAGGAGGAATGTCTTATTGGA
ACTTGGTTCGGGAAGAGAAGCATTGAGGTGGAGAGGGTTTCAGCGTTGTCACTGGCTAGC
AAGATGGTTCAGGCTTCCAAGTTCCAAGCTATCCAGGCCCGACTTTATGAAGGGAAAGAA
CCAATTCAGTTCTTTGTCATATTTCAAAGTTTTCAACTATTCAAGGGTGGACTTAGCTCT
GGATACAAGAACTTTGTTGTTGAAAATGATATTGTGGATGACACTTACTCTGAAGGTGGG
ATTGCCCTATTCCGGATTCAGGGTTCAGGATCAGAAAACATGCAAGCACTTCAGGTAGAT
CCGCTGGCTTCGTCCTTAAACTCGTCCTATTGTTACATTCTACATAATGGAAACACAGTG
TTCACATGGATTGGCAATGTTACGACCTCATTGGATCATGACTTGGTTGAGAGACAACTA
GATGTAATTAAGCCAGAATTGCCTTCCAGGTCACTAAAGGAGGGGAGAGAAACCGACCAA
TTTTGGGAAGTACTGGGCGGTAAATCCAAGTATCCAAACCAAAAAGTTGAAAGAGAAAAT
GAAAATGACCCCCATCTTTTCTCATGCATCATATCCAAAGGTAACTGCAAGGTCAAAGAA
ATACACCATTTTACTCAGGATGATCTGATGACAGAGGATGTTTTTATTCTTGATTGTCAC
TCAGACATATTTGTTTGGGTTGGCCAGAAGGTGGATACCAAAGTGAAATCACAAGCTATG
GATATTGGAGAGAAATTTCTTGTTCATGATTTCCTTATGGAAAAACTATCACGAGAAACA
CCAATATTCATTGTGTCAGAGGGTAGCGAGCCACAATTTTTTACTAGATTCTTCAATTGG
GACTCTACAAAATCTCTTGTGCATGGCAGTTCATACCAAAGGAAGCTTGGTGTCCTAAAG
GGTGGAGCACCTCCAACAGTGGATAAACCAAAACGACGAACACCAGCATTTACAGGAAGA
AGTTCAGGACAAGATAAATCTCATCGTTCAAGAAGCATGTCCACTAGCCCAGATCGTCCA
CGTGTTCGTGGAAGGTCTCCAGCCTTCAATATGTTAACTTCTGCCTTTGAGAACACGAGC
AATACCAGGAACCTTTCCACCCCTCCCCCTGTTGTGAGAAAGCCTTTCTCAAAATCTGGA
TGTCCTGAACACTCAAGGGTGTCACCCAAAAAATCAGCTATCAGTTCCCTCACCAGGTCT
TTTGAAGGTCACATGAAAAGTACAATACCAAAATCAGTAAAAGTGAGCCCTGAGCTAGAG
AAGGCGACACAGGAAGAAGGTGCCACAAGCGGTGCAAACGAAAACAAGCAAGAAGATGAC
GAAGGGCGTGTGATCTACCCATATGAACGTCTGACAACGACAGCAGAAGATCCTGCCCCT
GACATCGACGTGACCAAACGAGAGACCTACTTATCG

Peptide Sequence

PEP ID

Zm00001d002413_P006
PEP Infomation

pep chromosome:B73_RefGen_v4:2:12227140:12234523:1 gene:Zm00001d002413 transcript:Zm00001d002413_T006 gene_biotype:protein_coding transcript_biotype:protein_coding description:Villin-4
Sequence

MVWRIENFKPVPVPTSLHGKFYMGDSYIILKTTALKNGSFRHDIHYWLGKDTSQDEAGTA
AILTVELDAALGGRAVQYRESQGNETERFLSYFRPCIMPQSGGVVSGFNHVEVNDQKHVT
RLYVCRGKHVVHVKEVPFTRSSLNHEDIFILDTKSKIFQFNGSNSCIQERAKALEVVQYI
RDTFHEGKCEVAGVEDGKLMADAEAGEFWALFGGFAPLPKKTLSEDNGEDKEIIIKLMCI
NQGKLEQINFESLARELLEPNKCYLLDCGAEIYVWMGRSASLQERKGASKIAEKLLIDAS
RTKSHVIKVIEGFETVTFKSKFIEWPPTPDLKLSSEDGRVKVAALLKSQGLDVKGLMKTA
PVKEEPRPYIDCTGHLQVWRVNGNGKTLLSCADQSKFYTGDCYIFQYTYSGDDKEECLIG
TWFGKRSIEVERVSALSLASKMVQASKFQAIQARLYEGKEPIQFFVIFQSFQLFKGGLSS
GYKNFVVENDIVDDTYSEGGIALFRIQGSGSENMQALQVDPLASSLNSSYCYILHNGNTV
FTWIGNVTTSLDHDLVERQLDVIKPELPSRSLKEGRETDQFWEVLGGKSKYPNQKVEREN
ENDPHLFSCIISKGNCKVKEIHHFTQDDLMTEDVFILDCHSDIFVWVGQKVDTKVKSQAM
DIGEKFLVHDFLMEKLSRETPIFIVSEGSEPQFFTRFFNWDSTKSLVHGSSYQRKLGVLK
GGAPPTVDKPKRRTPAFTGRSSGQDKSHRSRSMSTSPDRPRVRGRSPAFNMLTSAFENTS
NTRNLSTPPPVVRKPFSKSGCPEHSRVSPKKSAISSLTRSFEGHMKSTIPKSVKVSPELE
KATQEEGATSGANENKQEDDEGRVIYPYERLTTTAEDPAPDIDVTKRETYLS

Transcript Sequence

Transcript ID

Zm00001d002413_T006
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:12227140:12234523:1 gene:Zm00001d002413 gene_biotype:protein_coding transcript_biotype:protein_coding description:Villin-4
Sequence

GGTTTGATGGTATGGCGTATTGAGAATTTTAAGCCAGTTCCTGTGCCAACATCATTACAT
GGAAAATTTTATATGGGTGATTCATATATCATCTTGAAGACAACAGCTTTAAAAAATGGT
TCCTTTCGCCATGACATCCATTATTGGCTTGGTAAAGACACTAGTCAGGATGAGGCTGGA
ACTGCTGCAATTTTAACTGTGGAGCTTGATGCTGCGCTTGGAGGACGTGCTGTCCAGTAC
CGGGAATCACAAGGCAATGAAACTGAAAGGTTTCTCTCATATTTTAGGCCTTGCATCATG
CCACAATCAGGAGGGGTAGTTTCTGGGTTCAACCATGTAGAAGTCAATGATCAGAAGCAT
GTTACCCGATTATATGTGTGCCGAGGAAAACATGTTGTCCATGTTAAAGAGGTTCCTTTT
ACTCGTTCATCCCTTAACCATGAGGACATATTTATTTTGGATACCAAGTCAAAAATTTTC
CAGTTCAATGGTTCTAACTCATGCATTCAGGAGAGAGCAAAAGCTCTTGAAGTTGTACAG
TATATCAGAGATACTTTCCATGAGGGCAAGTGTGAAGTTGCAGGGGTTGAGGATGGAAAA
TTGATGGCTGATGCAGAAGCTGGTGAATTTTGGGCTTTGTTTGGTGGCTTCGCTCCTCTT
CCAAAGAAGACACTTTCAGAGGATAACGGGGAAGACAAGGAAATCATCATCAAATTGATG
TGCATCAACCAAGGAAAATTGGAGCAAATTAATTTTGAATCCTTGGCGCGTGAGTTACTT
GAGCCAAACAAATGCTACTTGCTTGACTGTGGTGCTGAAATATATGTATGGATGGGCAGA
AGTGCTTCTTTGCAAGAAAGAAAGGGCGCGAGCAAAATTGCTGAGAAACTACTCATTGAT
GCTAGTCGAACAAAATCACATGTTATCAAAGTGATCGAGGGATTCGAGACAGTCACGTTC
AAGTCAAAATTTATTGAGTGGCCACCCACACCTGATTTGAAGTTATCATCTGAGGATGGA
AGAGTCAAAGTTGCAGCCCTCCTCAAATCTCAAGGATTAGATGTTAAAGGCTTGATGAAA
ACTGCACCTGTAAAAGAAGAACCCCGGCCTTACATTGATTGCACAGGTCATTTGCAGGTA
TGGAGGGTTAATGGAAATGGCAAGACTCTTCTTTCATGTGCTGACCAATCAAAATTTTAC
ACTGGAGATTGTTACATTTTTCAATACACATATAGTGGAGATGATAAGGAGGAATGTCTT
ATTGGAACTTGGTTCGGGAAGAGAAGCATTGAGGTGGAGAGGGTTTCAGCGTTGTCACTG
GCTAGCAAGATGGTTCAGGCTTCCAAGTTCCAAGCTATCCAGGCCCGACTTTATGAAGGG
AAAGAACCAATTCAGTTCTTTGTCATATTTCAAAGTTTTCAACTATTCAAGGGTGGACTT
AGCTCTGGATACAAGAACTTTGTTGTTGAAAATGATATTGTGGATGACACTTACTCTGAA
GGTGGGATTGCCCTATTCCGGATTCAGGGTTCAGGATCAGAAAACATGCAAGCACTTCAG
GTAGATCCGCTGGCTTCGTCCTTAAACTCGTCCTATTGTTACATTCTACATAATGGAAAC
ACAGTGTTCACATGGATTGGCAATGTTACGACCTCATTGGATCATGACTTGGTTGAGAGA
CAACTAGATGTAATTAAGCCAGAATTGCCTTCCAGGTCACTAAAGGAGGGGAGAGAAACC
GACCAATTTTGGGAAGTACTGGGCGGTAAATCCAAGTATCCAAACCAAAAAGTTGAAAGA
GAAAATGAAAATGACCCCCATCTTTTCTCATGCATCATATCCAAAGGTAACTGCAAGGTC
AAAGAAATACACCATTTTACTCAGGATGATCTGATGACAGAGGATGTTTTTATTCTTGAT
TGTCACTCAGACATATTTGTTTGGGTTGGCCAGAAGGTGGATACCAAAGTGAAATCACAA
GCTATGGATATTGGAGAGAAATTTCTTGTTCATGATTTCCTTATGGAAAAACTATCACGA
GAAACACCAATATTCATTGTGTCAGAGGGTAGCGAGCCACAATTTTTTACTAGATTCTTC
AATTGGGACTCTACAAAATCTCTTGTGCATGGCAGTTCATACCAAAGGAAGCTTGGTGTC
CTAAAGGGTGGAGCACCTCCAACAGTGGATAAACCAAAACGACGAACACCAGCATTTACA
GGAAGAAGTTCAGGACAAGATAAATCTCATCGTTCAAGAAGCATGTCCACTAGCCCAGAT
CGTCCACGTGTTCGTGGAAGGTCTCCAGCCTTCAATATGTTAACTTCTGCCTTTGAGAAC
ACGAGCAATACCAGGAACCTTTCCACCCCTCCCCCTGTTGTGAGAAAGCCTTTCTCAAAA
TCTGGATGTCCTGAACACTCAAGGGTGTCACCCAAAAAATCAGCTATCAGTTCCCTCACC
AGGTCTTTTGAAGGTCACATGAAAAGTACAATACCAAAATCAGTAAAAGTGAGCCCTGAG
CTAGAGAAGGCGACACAGGAAGAAGGTGCCACAAGCGGTGCAAACGAAAACAAGCAAGAA
GATGACGAAGGGCGTGTGATCTACCCATATGAACGTCTGACAACGACAGCAGAAGATCCT
GCCCCTGACATCGACGTGACCAAACGAGAGACCTACTTATCGTC