Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d002396_T025
CDS Infomation

cds chromosome:B73_RefGen_v4:2:11926257:11934307:1 gene:Zm00001d002396 gene_biotype:protein_coding transcript_biotype:protein_coding description:Calcium-transporting ATPase 9 plasma membrane-type
Sequence

ATGGTTGGACTTTCTGTTGCCCTTGCAGTTCTGGTTGTACTTTTGGCCAGGTACTTCACT
GGGCATACTTATAATCCTGACGGATCTGTGCAATATGTGAAAGGGAAGATGGGTGTAGGC
CAGACGATACGTGGAGTAGTTAGAATATTCACAGTGGCTGTCACTATTGTGGTCGTGGCT
GTTCCAGAAGGACTACCATTAGCTGTCACACTGACGCTTGCTTTCTCAATGCGCAAAATG
ATGAAGGACAAGGCTCTGGTCAGGAGGCTTTCTGCATGTGAAACGATGGGTTCTGCCACA
ACAATCTGCAGTGACAAGACTGGCACCTTAACTTTAAATCAGATGACTGTTGTTGAGGCA
TATTTTGGTGGAAAGAAGATGGACTCACCAGATAATGCACAAATGTTATCTGCTGATGTC
ACATCACTGATTGTTGAAGGAATTGCACAGAACACTTCTGGAAGCATATTTGAGCCCGAG
GGTGGTCAAGAACCGGAGGTGACTGGATCACCTACAGAAAAGGCTATATTGTCTTGGGGG
CTAAAGCTGGGTATGAAATTCAATGAAACAAGATTGAAGTCATCTATTCTTCATGTATTT
CCTTTCAACTCAGAGAAAAAGCGAGGTGGGGTTGCAGTGCACCTGGATGGCCCTGAAGTC
CATATACACTGGAAAGGAGCAGCTGAAATCATTTTGGATTCATGCACAAGCTGGCTTGAC
ACTGATGGTTCGAAGCACTCAATGACTCCTGAAAAAATTGCTGAATTCAAGAAATTCATT
GAAGATATGGCTGTGGCTAGCCTCCGCTGTGTTGCCTTTGCCTATATAACTCATGAGATG
GATGATGTTCCAAACGAAGATCAGAGGGCAGAGTGGAAACTGCCTGAAGATAACCTCATT
ATGCTTGGAATTGTGGGAATAAAGGATCCCTGCCGTCCAGGAGTTCGAGATTCTGTTCGT
TTATGTCAGGCAGCTGGCATTAAGGTGCGCATGGTTACTGGTGATAATCTTCAAACTGCG
AGAGCCATTGCCCTGGAATGCGGGATACTTGATGATCCCAATGTGTTGGAGCCTGTCATC
ATTGAAGGAAAAGCATTCCGGGTGCTGTCAGACTTAGAAAGGGAGGAAGCTGCTGAAAAA
ATATCTGTGATGGGGAGGTCTTCACCAAATGATAAACTTTTACTTGTTAAGGCACTGAGG
GCAAGAGGTCATGTTGTTGCTGTTACTGGAGATGGCACAAATGATGCCCCAGCACTGCAT
GAGGCAGATATTGGTCTATCAATGGGCATTCAGGGAACTGAAGTTGCCAAGGAGAGTTCT
GATATTATTATCTTGGATGACAATTTCGCATCAGTCGTGAGGGTTGTCAGATGGGGTCGT
TCGGTGTATGCAAACATACAGAAGTTTATACAATTCCAACTAACGGTCAACGTCGCAGCT
CTGATAATCAATGTAGTTGCTGCCGTCAGTTCTGGAAATGTGCCGTTGAATGCTGTTCAG
TTGCTGTGGGTTAACCTAATTATGGATACTTTGGGTGCCCTTGCATTGGCGACAGAACCA
CCTACAAACCATCTTATGGAGAGACCCCCAGTAGGGAGAAGGGAGCCATTGATTACAAAT
ATCATGTGGAGAAACTTAATTATCATGGCTTTGTTTCAAGTTTCAGTTCTCCTCACTCTC
AACTTCAAGGGAATAAGCCTCCTGCAGTTGAAAAATGATGATCCAGCACATGCAGATAAA
GTGAAAAATACCTTCATTTTCAACACATTTGTTCTCTGCCAGGTGTTCAACGAATTCAAT
TCGCGTAAACCAGATGAGCTGAATATATTCAAGGGCATTTCAGGGAACCATCTGTTTATT
GGCATCATAGCTATAACAGTTGTACTCCAGGCGCTTATCGTTGAGTTCCTTGGCAAGTTT
GCCTCAACGGTAAGGCTAAGTTGGCAGTTGTGGTTGGTATCGATAGGTCTTGCTTTCTTC
GGCTGGCCGCTGGCATTCGTGGGGAAGCTTATTCCTGTTCCTAAACGTCCATTGGGAGAA
TTCTTTGCATGCTGCTGTATCTGCAAGGGGAGCAAACAAGCCCCTGATGACGCAACCTCT
AATGATAAGGAAGACAACAAGCCCGAGCCTTGA

Peptide Sequence

PEP ID

Zm00001d002396_P025
PEP Infomation

pep chromosome:B73_RefGen_v4:2:11926257:11934307:1 gene:Zm00001d002396 transcript:Zm00001d002396_T025 gene_biotype:protein_coding transcript_biotype:protein_coding description:Calcium-transporting ATPase 9 plasma membrane-type
Sequence

MVGLSVALAVLVVLLARYFTGHTYNPDGSVQYVKGKMGVGQTIRGVVRIFTVAVTIVVVA
VPEGLPLAVTLTLAFSMRKMMKDKALVRRLSACETMGSATTICSDKTGTLTLNQMTVVEA
YFGGKKMDSPDNAQMLSADVTSLIVEGIAQNTSGSIFEPEGGQEPEVTGSPTEKAILSWG
LKLGMKFNETRLKSSILHVFPFNSEKKRGGVAVHLDGPEVHIHWKGAAEIILDSCTSWLD
TDGSKHSMTPEKIAEFKKFIEDMAVASLRCVAFAYITHEMDDVPNEDQRAEWKLPEDNLI
MLGIVGIKDPCRPGVRDSVRLCQAAGIKVRMVTGDNLQTARAIALECGILDDPNVLEPVI
IEGKAFRVLSDLEREEAAEKISVMGRSSPNDKLLLVKALRARGHVVAVTGDGTNDAPALH
EADIGLSMGIQGTEVAKESSDIIILDDNFASVVRVVRWGRSVYANIQKFIQFQLTVNVAA
LIINVVAAVSSGNVPLNAVQLLWVNLIMDTLGALALATEPPTNHLMERPPVGRREPLITN
IMWRNLIIMALFQVSVLLTLNFKGISLLQLKNDDPAHADKVKNTFIFNTFVLCQVFNEFN
SRKPDELNIFKGISGNHLFIGIIAITVVLQALIVEFLGKFASTVRLSWQLWLVSIGLAFF
GWPLAFVGKLIPVPKRPLGEFFACCCICKGSKQAPDDATSNDKEDNKPEP

Transcript Sequence

Transcript ID

Zm00001d002396_T025
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:11926257:11934307:1 gene:Zm00001d002396 gene_biotype:protein_coding transcript_biotype:protein_coding description:Calcium-transporting ATPase 9 plasma membrane-type
Sequence

GGTAACTGCTGTTGGAGTCAACACTGAATGGGGGTTGCTAATGGCAAGCATATCTGAAGA
TTCGGGTGAAGAGACACCACTCCAGGTTTGATTTTGTTGTTGTTGCCAGCCTTTGCGCGA
GTTTATTTCCTTTACATGCCTTTGTTGTTCCGGTGCAGGTTCGTTTGAATGGTGTCGCTA
CTTTCATTGGAATGGTTGGACTTTCTGTTGCCCTTGCAGTTCTGGTTGTACTTTTGGCCA
GGTACTTCACTGGGCATACTTATAATCCTGACGGATCTGTGCAATATGTGAAAGGGAAGA
TGGGTGTAGGCCAGACGATACGTGGAGTAGTTAGAATATTCACAGTGGCTGTCACTATTG
TGGTCGTGGCTGTTCCAGAAGGACTACCATTAGCTGTCACACTGACGCTTGCTTTCTCAA
TGCGCAAAATGATGAAGGACAAGGCTCTGGTCAGGAGGCTTTCTGCATGTGAAACGATGG
GTTCTGCCACAACAATCTGCAGTGACAAGACTGGCACCTTAACTTTAAATCAGATGACTG
TTGTTGAGGCATATTTTGGTGGAAAGAAGATGGACTCACCAGATAATGCACAAATGTTAT
CTGCTGATGTCACATCACTGATTGTTGAAGGAATTGCACAGAACACTTCTGGAAGCATAT
TTGAGCCCGAGGGTGGTCAAGAACCGGAGGTGACTGGATCACCTACAGAAAAGGCTATAT
TGTCTTGGGGGCTAAAGCTGGGTATGAAATTCAATGAAACAAGATTGAAGTCATCTATTC
TTCATGTATTTCCTTTCAACTCAGAGAAAAAGCGAGGTGGGGTTGCAGTGCACCTGGATG
GCCCTGAAGTCCATATACACTGGAAAGGAGCAGCTGAAATCATTTTGGATTCATGCACAA
GCTGGCTTGACACTGATGGTTCGAAGCACTCAATGACTCCTGAAAAAATTGCTGAATTCA
AGAAATTCATTGAAGATATGGCTGTGGCTAGCCTCCGCTGTGTTGCCTTTGCCTATATAA
CTCATGAGATGGATGATGTTCCAAACGAAGATCAGAGGGCAGAGTGGAAACTGCCTGAAG
ATAACCTCATTATGCTTGGAATTGTGGGAATAAAGGATCCCTGCCGTCCAGGAGTTCGAG
ATTCTGTTCGTTTATGTCAGGCAGCTGGCATTAAGGTGCGCATGGTTACTGGTGATAATC
TTCAAACTGCGAGAGCCATTGCCCTGGAATGCGGGATACTTGATGATCCCAATGTGTTGG
AGCCTGTCATCATTGAAGGAAAAGCATTCCGGGTGCTGTCAGACTTAGAAAGGGAGGAAG
CTGCTGAAAAAATATCTGTGATGGGGAGGTCTTCACCAAATGATAAACTTTTACTTGTTA
AGGCACTGAGGGCAAGAGGTCATGTTGTTGCTGTTACTGGAGATGGCACAAATGATGCCC
CAGCACTGCATGAGGCAGATATTGGTCTATCAATGGGCATTCAGGGAACTGAAGTTGCCA
AGGAGAGTTCTGATATTATTATCTTGGATGACAATTTCGCATCAGTCGTGAGGGTTGTCA
GATGGGGTCGTTCGGTGTATGCAAACATACAGAAGTTTATACAATTCCAACTAACGGTCA
ACGTCGCAGCTCTGATAATCAATGTAGTTGCTGCCGTCAGTTCTGGAAATGTGCCGTTGA
ATGCTGTTCAGTTGCTGTGGGTTAACCTAATTATGGATACTTTGGGTGCCCTTGCATTGG
CGACAGAACCACCTACAAACCATCTTATGGAGAGACCCCCAGTAGGGAGAAGGGAGCCAT
TGATTACAAATATCATGTGGAGAAACTTAATTATCATGGCTTTGTTTCAAGTTTCAGTTC
TCCTCACTCTCAACTTCAAGGGAATAAGCCTCCTGCAGTTGAAAAATGATGATCCAGCAC
ATGCAGATAAAGTGAAAAATACCTTCATTTTCAACACATTTGTTCTCTGCCAGGTGTTCA
ACGAATTCAATTCGCGTAAACCAGATGAGCTGAATATATTCAAGGGCATTTCAGGGAACC
ATCTGTTTATTGGCATCATAGCTATAACAGTTGTACTCCAGGCGCTTATCGTTGAGTTCC
TTGGCAAGTTTGCCTCAACGGTAAGGCTAAGTTGGCAGTTGTGGTTGGTATCGATAGGTC
TTGCTTTCTTCGGCTGGCCGCTGGCATTCGTGGGGAAGCTTATTCCTGTTCCTAAACGTC
CATTGGGAGAATTCTTTGCATGCTGCTGTATCTGCAAGGGGAGCAAACAAGCCCCTGATG
ACGCAACCTCTAATGATAAGGAAGACAACAAGCCCGAGCCTTGAGATGTCAGCAAGATTG
ATGGTTGCTAACAATGACCTTGTGCTGTTTCTTACCGGGTTTTGACGTGTTGGATTTGTG
ATTACCACTGATTGCTATTGTACTTCAAACAGGAAGGCTGGAAATGCAACTCGGCTTCTC
ATGAGACCTTGTCATTTGCTGTAGTTCGTTCGCAACTGTATATTGTAGCTTGGAAGACTC
TGTGCCGTGGTGCGTGTATTTGAGAAATTTCTATG