Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Zea mays ) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d002256_T022
CDS Infomation	cds chromosome:B73_RefGen_v4:2:9055574:9066241:1 gene:Zm00001d002256 gene_biotype:protein_coding transcript_biotype:protein_coding description:Starch synthase 3 chloroplastic/amyloplastic
Sequence	ATGGAGACGAATCTCCGGGCTCAGAGCCCGCTCTGCTCCCGGACCCGCCCCGCACTCGCC GTGCGCCCGGACGCTGCCGCCACTGGCCTCACGCTGTCTGTCATAAGGCGCAGCCGATTT ACGAGAGGCGGGCTCGTTCGATGCATGGTGTCAAGTTCAGATTATCATAAGAGTAGTCCG AGAAGGACGTCGACTTCTAAGAGCAAGGGTGTCCCTTCCGGAGGGTATGCTTCAAGACCT ACTGCTGAATCCAGCACGAAGAAGATAGAACAGAGCAGCGACGATGAAGGTGATTTTAGC AGAACCAATGGGTCACTCTATGGTGAGGCAGCGGAGCAGGCAAGTACTGCAGAAGAGTCG TCTCAGGTTTACTCGACAGGAGACATTTCAAGCAGCGCAGAAAGGGGCGAAGCTGGGACC GAAGAAGAGGCTGACCAAAATCAATCTTCAGCGTTGTTTTCTGTATCTGTGGATGATGAC TCAATCGACAGGAAACTTGATGAGTACCGTGGTAAAATAAGTGCACTAGCAAGTTCGAAA CCTAAATCTTCATCACTTGCAAGTGTTGCTGGACAAAACGAACCAGTTGGCGGGCAAGAG GAACCAGTAACTGGTTCCAAGGAACATGACAGTTCAATTGTTGATGCGCCCATAAGAGGC AGGCCATTTGCTGAGGCTGTTGTGGGATATAAGGATTTTACTGAATCAGTAGCAGGAATG GCAGCCAGCAAGAATGAGGAAGAACAACTTGTCTCGTTAGAAGATGTGGTGGGGATAAGT ACAGATGCAGATATAGAAGCACCGGTTGAGGATGATGTTGATCCAGAAGTGCTACTGAGG AGGCTTCAAGAGCTTGCTGATGAGAATTATTTGATTGGGAACAACTGTTTTTCTTTCCCT GAAGTAGTGATGGCTGATTCGATGATTGATCTTTACTTAAACCGCAGCATGTCGGCCTTA GCTAGCGAGTCCAATGTTTTTGTAAAAGGAGCATTCAATGGTTGGAGATGGAACGCTTTC ACTGAAACAATGCATAAAAGTGAATTAAGAGGGGATTGGTGGTGCTGCAAGCTCTACATT CCCAAGCAGGCATACAGATTAGACTTTGTATTCTTTAATGGTGACACTGTCTATGAAAAC AACAATCACAATGATTTTTTCCTGGAAATAGAAAGTGGCATAGATGAACACTCATTTGAG GATTTCTTGGTTGAAGAAAAACGAAAGGAACTCGAGAGGCTAGCTGCAGAAGAAGCTGAA AGGAAAATACAAGCTGAGGAGGAGCGGAAGCGAGGGGAAGAAAGGGCCGCGATGGAGGCT GACAGAGCACAGGCAAGATCCGAGGTTGAGATGAAGAAAGAGAAATTGCGCCAGTTGTTG AGTTCAGCCAGTAGATATGCTGATAACTTATGGTACATAGAACCGAACACCTACAGAGGA GGGGACAGGGTTAGATTGTACTATCACAGAAGCTCAAGACCACTAATGCATGACACTGAG ATTTGGATGCATGGAGGTTACAACAACTGGATTGATGGACTCTCAATAGCTGAAAGACTT GTCAAATCTCATGAAAAGGAAGGTGATTGGTGGTATGCAGAAGTTACATTACCTGAAAGG GCATTGCTGTTTGATTGGGTTTTTGCTGATGGGCCACCTGGGAATGCAAGGAATTATGAT AACAATGGAAGACAGGATTTCCATGCTATCGTTCCGAATAACATATCGGATGATATCTTT TGGGTGGAAGAAGAACATAGGATCTTTACAAGGCTTCAACAAGAGAGAAGAGAAAGGGAG GGCGCTGAAAGAATAAAGGCTGAGAGATCTGCAAAAATGAAGGCTGAGATGAAGGAAAAG ACTATGAGAGCGTTTCTGCTTTCACAAAAACATATTGTGTATACTGAGCCGCTCGAAGTA CATGCAGGAACCACTGTGGACATTCTTTATAACCCTTCTAACACAGTGCTGAATGGAAAG ACGGAGGTTTGGTTCAGAGGTTCCTTTAACCGTTGGACTCATCCAAGTGGTCCCTTACCA CCACAGAAGATGGTAAAGGCTGAGAATGGTTCACACTTACGAACAACAGTCAGGGTTCCC TTGGATGCATATATGATGGACTTTGTCTTCTCTGAGTCAGAAGGTGGAATATATGACAAT AGGAATGGGATGGACTATCATATTCCTGTGTCTGATTCTGTTGCAAGGGAACCTCCAATG CATATTGTACACATTGCAGTGGAAATGGCTCCTATCGCGAAGGTCGGAGGCCTTGGTGAT GTTGTTACAAGCCTTTCACGAGCTGTTCAAGATTTAGGCCATAAAGTTGAGGTTATTCTG CCGAAATATGATTGTTTAAACCTTAACAGTGTGAAGGATTTACGCTACCAACAAAGTTTT ACTTGGGGTGGCACAGAGATAAAAGTATGGTTTGGAAAGGTTGAAGATCTCCCTGTTTAT TTCTTGGAACCACAAAATGGGATGTTTTGGGTTGGATGTGTCTACGGGAAGAATGATGAG AGTAGATTTGGCTTCTTCTGTCATTCTGCTCTGGAGTTTTTGCTCCAAAAAGGATCTTCT CCTGATATCATACATTGTCATGATTGGTCAAGTGCTCCCGTTGCTTGGCTGTACAAGGAA CATTATGCTCTTAATGGGATCGGAAATGGTCGGATTGTATTTACCATCCACAATCTTGAG TTTGGAGCGCATCACATTGGCAAGGCAATGGCACATTGTGACAAAGCTACAACTGTATCC GATACATACTCGAAGGAAGTGGCCGGACATGGAGCTATTGCACCTCACTACTATAAATTC CATGGAATTCGAAATGGAATTGATCCTGATATTTGGGATCCATATACTGACAAATTTATT CCGGTCCATTATACATCAGAGAATGTTGTTGAGGGCAAGAGTGCTGCAAAAAAGGCATTG CAGCAGATGCTTGGATTACAGCAAACTGATACCCCTGTTGTTGGAATCATCACTCGTCTA ACAGTTCAGAAGGGAATCCACCTTATCAAACATGCAATGCATCGAGCTCTTGAACGCAAT GGACAGGTGGTTTTACTGGGTTCTGCACCAGATCCTCGCATACAAAGTGACTTTACAAAT TTGGCCAGTAAGCTGCATGGTGAATACCATGGCCGAGTGAAGCTATGTCTAACCTATGAC GAGCCACTGTCACATTTGATATATGCTGGCGCAGACTTCATTCTCGTTCCTTCCATCTTC GAACCTTGTGGTCTAACACAGCTTATTGCTATGCGCTATGGATCCATCCCAGTTGTTCGG AAAACTGGAGGCCTGTACGACACCGTTTTTGATGTCGACAATGATAAGGATCGGGCTCAA GCACAAGGTCTCGAGCCAAATGGATTCAGTTTCGAAGGAGCTGATAGCAGTGGTGTGGAT TATGCTCTCGACAGAGCCATAACCACATTTTATGATGCACGCGACTGGTTCAATTCCCTT TGCAAGAGGGTAATGGAGCAAGATTGGTCATGGAACAGACCTGCCCTAGACTACATGGAG TTGTACCATTCTGCTCGCAAAAGCTGA

Peptide Sequence

PEP ID	Zm00001d002256_P022
PEP Infomation	pep chromosome:B73_RefGen_v4:2:9055574:9066241:1 gene:Zm00001d002256 transcript:Zm00001d002256_T022 gene_biotype:protein_coding transcript_biotype:protein_coding description:Starch synthase 3 chloroplastic/amyloplastic
Sequence	METNLRAQSPLCSRTRPALAVRPDAAATGLTLSVIRRSRFTRGGLVRCMVSSSDYHKSSP RRTSTSKSKGVPSGGYASRPTAESSTKKIEQSSDDEGDFSRTNGSLYGEAAEQASTAEES SQVYSTGDISSSAERGEAGTEEEADQNQSSALFSVSVDDDSIDRKLDEYRGKISALASSK PKSSSLASVAGQNEPVGGQEEPVTGSKEHDSSIVDAPIRGRPFAEAVVGYKDFTESVAGM AASKNEEEQLVSLEDVVGISTDADIEAPVEDDVDPEVLLRRLQELADENYLIGNNCFSFP EVVMADSMIDLYLNRSMSALASESNVFVKGAFNGWRWNAFTETMHKSELRGDWWCCKLYI PKQAYRLDFVFFNGDTVYENNNHNDFFLEIESGIDEHSFEDFLVEEKRKELERLAAEEAE RKIQAEEERKRGEERAAMEADRAQARSEVEMKKEKLRQLLSSASRYADNLWYIEPNTYRG GDRVRLYYHRSSRPLMHDTEIWMHGGYNNWIDGLSIAERLVKSHEKEGDWWYAEVTLPER ALLFDWVFADGPPGNARNYDNNGRQDFHAIVPNNISDDIFWVEEEHRIFTRLQQERRERE GAERIKAERSAKMKAEMKEKTMRAFLLSQKHIVYTEPLEVHAGTTVDILYNPSNTVLNGK TEVWFRGSFNRWTHPSGPLPPQKMVKAENGSHLRTTVRVPLDAYMMDFVFSESEGGIYDN RNGMDYHIPVSDSVAREPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLGHKVEVIL PKYDCLNLNSVKDLRYQQSFTWGGTEIKVWFGKVEDLPVYFLEPQNGMFWVGCVYGKNDE SRFGFFCHSALEFLLQKGSSPDIIHCHDWSSAPVAWLYKEHYALNGIGNGRIVFTIHNLE FGAHHIGKAMAHCDKATTVSDTYSKEVAGHGAIAPHYYKFHGIRNGIDPDIWDPYTDKFI PVHYTSENVVEGKSAAKKALQQMLGLQQTDTPVVGIITRLTVQKGIHLIKHAMHRALERN GQVVLLGSAPDPRIQSDFTNLASKLHGEYHGRVKLCLTYDEPLSHLIYAGADFILVPSIF EPCGLTQLIAMRYGSIPVVRKTGGLYDTVFDVDNDKDRAQAQGLEPNGFSFEGADSSGVD YALDRAITTFYDARDWFNSLCKRVMEQDWSWNRPALDYMELYHSARKS

Transcript Sequence

Transcript ID	Zm00001d002256_T022
Transcript Infomation	cdna chromosome:B73_RefGen_v4:2:9055574:9066241:1 gene:Zm00001d002256 gene_biotype:protein_coding transcript_biotype:protein_coding description:Starch synthase 3 chloroplastic/amyloplastic
Sequence	AGGGGGGAGTGAGCGAGGGGGAGGTTTTGCCGCCGGCAATGGAGACGAATCTCCGGGCTC AGAGCCCGCTCTGCTCCCGGACCCGCCCCGCACTCGCCGTGCGCCCGGACGCTGCCGCCA CTGGCCTCACGCTGTCTGTCATAAGGCGCAGCCGATTTACGAGAGGCGGGCTCGTTCGAT GCATGGTGTCAAGTTCAGATTATCATAAGAGTAGTCCGAGAAGGACGTCGACTTCTAAGA GCAAGGGTGTCCCTTCCGGAGGGTATGCTTCAAGACCTACTGCTGAATCCAGCACGAAGA AGATAGAACAGAGCAGCGACGATGAAGGTGATTTTAGCAGAACCAATGGGTCACTCTATG GTGAGGCAGCGGAGCAGGCAAGTACTGCAGAAGAGTCGTCTCAGGTTTACTCGACAGGAG ACATTTCAAGCAGCGCAGAAAGGGGCGAAGCTGGGACCGAAGAAGAGGCTGACCAAAATC AATCTTCAGCGTTGTTTTCTGTATCTGTGGATGATGACTCAATCGACAGGAAACTTGATG AGTACCGTGGTAAAATAAGTGCACTAGCAAGTTCGAAACCTAAATCTTCATCACTTGCAA GTGTTGCTGGACAAAACGAACCAGTTGGCGGGCAAGAGGAACCAGTAACTGGTTCCAAGG AACATGACAGTTCAATTGTTGATGCGCCCATAAGAGGCAGGCCATTTGCTGAGGCTGTTG TGGGATATAAGGATTTTACTGAATCAGTAGCAGGAATGGCAGCCAGCAAGAATGAGGAAG AACAACTTGTCTCGTTAGAAGATGTGGTGGGGATAAGTACAGATGCAGATATAGAAGCAC CGGTTGAGGATGATGTTGATCCAGAAGTGCTACTGAGGAGGCTTCAAGAGCTTGCTGATG AGAATTATTTGATTGGGAACAACTGTTTTTCTTTCCCTGAAGTAGTGATGGCTGATTCGA TGATTGATCTTTACTTAAACCGCAGCATGTCGGCCTTAGCTAGCGAGTCCAATGTTTTTG TAAAAGGAGCATTCAATGGTTGGAGATGGAACGCTTTCACTGAAACAATGCATAAAAGTG AATTAAGAGGGGATTGGTGGTGCTGCAAGCTCTACATTCCCAAGCAGGCATACAGATTAG ACTTTGTATTCTTTAATGGTGACACTGTCTATGAAAACAACAATCACAATGATTTTTTCC TGGAAATAGAAAGTGGCATAGATGAACACTCATTTGAGGATTTCTTGGTTGAAGAAAAAC GAAAGGAACTCGAGAGGCTAGCTGCAGAAGAAGCTGAAAGGAAAATACAAGCTGAGGAGG AGCGGAAGCGAGGGGAAGAAAGGGCCGCGATGGAGGCTGACAGAGCACAGGCAAGATCCG AGGTTGAGATGAAGAAAGAGAAATTGCGCCAGTTGTTGAGTTCAGCCAGTAGATATGCTG ATAACTTATGGTACATAGAACCGAACACCTACAGAGGAGGGGACAGGGTTAGATTGTACT ATCACAGAAGCTCAAGACCACTAATGCATGACACTGAGATTTGGATGCATGGAGGTTACA ACAACTGGATTGATGGACTCTCAATAGCTGAAAGACTTGTCAAATCTCATGAAAAGGAAG GTGATTGGTGGTATGCAGAAGTTACATTACCTGAAAGGGCATTGCTGTTTGATTGGGTTT TTGCTGATGGGCCACCTGGGAATGCAAGGAATTATGATAACAATGGAAGACAGGATTTCC ATGCTATCGTTCCGAATAACATATCGGATGATATCTTTTGGGTGGAAGAAGAACATAGGA TCTTTACAAGGCTTCAACAAGAGAGAAGAGAAAGGGAGGGCGCTGAAAGAATAAAGGCTG AGAGATCTGCAAAAATGAAGGCTGAGATGAAGGAAAAGACTATGAGAGCGTTTCTGCTTT CACAAAAACATATTGTGTATACTGAGCCGCTCGAAGTACATGCAGGAACCACTGTGGACA TTCTTTATAACCCTTCTAACACAGTGCTGAATGGAAAGACGGAGGTTTGGTTCAGAGGTT CCTTTAACCGTTGGACTCATCCAAGTGGTCCCTTACCACCACAGAAGATGGTAAAGGCTG AGAATGGTTCACACTTACGAACAACAGTCAGGGTTCCCTTGGATGCATATATGATGGACT TTGTCTTCTCTGAGTCAGAAGGTGGAATATATGACAATAGGAATGGGATGGACTATCATA TTCCTGTGTCTGATTCTGTTGCAAGGGAACCTCCAATGCATATTGTACACATTGCAGTGG AAATGGCTCCTATCGCGAAGGTCGGAGGCCTTGGTGATGTTGTTACAAGCCTTTCACGAG CTGTTCAAGATTTAGGCCATAAAGTTGAGGTTATTCTGCCGAAATATGATTGTTTAAACC TTAACAGTGTGAAGGATTTACGCTACCAACAAAGTTTTACTTGGGGTGGCACAGAGATAA AAGTATGGTTTGGAAAGGTTGAAGATCTCCCTGTTTATTTCTTGGAACCACAAAATGGGA TGTTTTGGGTTGGATGTGTCTACGGGAAGAATGATGAGAGTAGATTTGGCTTCTTCTGTC ATTCTGCTCTGGAGTTTTTGCTCCAAAAAGGATCTTCTCCTGATATCATACATTGTCATG ATTGGTCAAGTGCTCCCGTTGCTTGGCTGTACAAGGAACATTATGCTCTTAATGGGATCG GAAATGGTCGGATTGTATTTACCATCCACAATCTTGAGTTTGGAGCGCATCACATTGGCA AGGCAATGGCACATTGTGACAAAGCTACAACTGTATCCGATACATACTCGAAGGAAGTGG CCGGACATGGAGCTATTGCACCTCACTACTATAAATTCCATGGAATTCGAAATGGAATTG ATCCTGATATTTGGGATCCATATACTGACAAATTTATTCCGGTCCATTATACATCAGAGA ATGTTGTTGAGGGCAAGAGTGCTGCAAAAAAGGCATTGCAGCAGATGCTTGGATTACAGC AAACTGATACCCCTGTTGTTGGAATCATCACTCGTCTAACAGTTCAGAAGGGAATCCACC TTATCAAACATGCAATGCATCGAGCTCTTGAACGCAATGGACAGGTGGTTTTACTGGGTT CTGCACCAGATCCTCGCATACAAAGTGACTTTACAAATTTGGCCAGTAAGCTGCATGGTG AATACCATGGCCGAGTGAAGCTATGTCTAACCTATGACGAGCCACTGTCACATTTGATAT ATGCTGGCGCAGACTTCATTCTCGTTCCTTCCATCTTCGAACCTTGTGGTCTAACACAGC TTATTGCTATGCGCTATGGATCCATCCCAGTTGTTCGGAAAACTGGAGGCCTGTACGACA CCGTTTTTGATGTCGACAATGATAAGGATCGGGCTCAAGCACAAGGTCTCGAGCCAAATG GATTCAGTTTCGAAGGAGCTGATAGCAGTGGTGTGGATTATGCTCTCGACAGAGCCATAA CCACATTTTATGATGCACGCGACTGGTTCAATTCCCTTTGCAAGAGGGTAATGGAGCAAG ATTGGTCATGGAACAGACCTGCCCTAGACTACATGGAGTTGTACCATTCTGCTCGCAAAA GCTGATAGCTTTTACCACTAGGGAAATCAGGCTCGTTTTGCCCAGGTTAGAAGCATCTCA GCCTCAGGCCTTGTGCAAATTCATTTGTGCACTGGGAAGAAAAGAGTACCGACTGGCCTT GAGCATGCCCGCCGTCTAAGGATGCAACACACACCGTGTATAGTTAGAGAATGCTACTCG TCGTACGTTTCATGCATGTGTTTTGTGTATACACCTCATGTAGCTTGCAAAACAACAGTA CGACGTATCCCGGCCGTCTACCATGCCTGAGGGCGTATATAGGCTATAGGCTTATGCAAA GCATGTACCATTAATTAATTATTACATAGTCTTTTTATGTCAAAGTAGTGGAGG