Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d002190_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:2:7649644:7654759:1 gene:Zm00001d002190 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:severe depolymerization of actin1 description:ARM repeat superfamily protein
Sequence

ATGCCGCGCAAGCACGCGCCGGCGTTTACGCCGGAGGCAGCCTCCGCCTCTTCGTCAGGC
GGGGCTGGCCAGCCGCATAACCTCCCCGTGCTTCAGGCGAAGATGAAGCGTGACCCGGAG
GGCTACGAGGAGGAGCTCCGCCAGCTCCACCGCCACTTCGAGTCCTCGGTGTTCCTATTC
CAGCAGCAGGCGGCGCTGGCTACAACCTCGTCCTCGGGAGGCGGCGGGGAGGTGGCCAAG
GAGCTCGGGGACCTCGCCCTGTTCCTTGCCCACGTCGCGCCTTTCTACCCGGATGACCTC
GCCGATTTGCCCGACCAGATTGGTGGCTTGCTCGACACCAACGCGCGTGGGCTGCCGCCG
GGGCTCAGGTCTCACCTCGTGCAGGCGCTTGTATTGCTGGTGAATCGGAAGATTGTCGAT
CTTGAGGACACAATGGAGTTATTCATGGAGCTTCAAGTTATTGGAGATCGAGCTGTAAAA
AAGCTAGCATTTTCGCATATTGTACACAGTATCAGGAGGATGAACCAGAAGCACAAGAAT
GAATCGACAAATCGTAAACTGCAAAACGTCCTTTTTAAATTCTTACAGGCTGAAGAAGAG
TCACGAGCAAAGAGAGCATTTACTATCCTTTGTGATCTTCACCGTCGGAGGGTCTGGTTT
GATGAACGCACAACAAATGCAATATGTGATGCTTGTTTCCACCCTTCCTCTAGGATTATG
ATAGCTGCTATTTCATTTCTTCTTGGATATGAAAATGCTCCACAAGAGGATGATAGCGAC
GCATCAAGCAGTGAAGATGAAGCAGATCAAAACCCACAAATTCTTCTCAGTAAACAGGAC
GTTTATAAGGCAAATCACAAGGGTACGTCTGCTAGTAAAAAAAAGAAGAAAGCTAAATTA
CAGCGGGTCATTCGTAGCATGAAAAGACAACAGCGGAAATCTGTCGAGGAAACTGGTTCC
AGTTTCTATTCACCCCTGACATATTTAAAAGATGCCCAGGGTTTTGCGGAGAAGCTTTTC
TCTCGGTTGCAGAAATGCAATGAGCGATTTGAGGTAAGGATGATGATGCTAAAAGTAATC
GCGAGGACCATTGGGCTGCATCACTTGGTTTTGTTGAACTTCTACCCGTATCTTCAAAGA
TACGTTCAACCTCATCAACGAGATGTGACGACTCTACTCGCTGCAGCAGTTCAGGCTTGC
CATGATATGGTACCTCCAGATGCTGTTGAACCACTGTTCAAGCAGATAGTAAATCAGTTT
GTGCATGACCGTTCTCGTCCAGAGGCTATTGCTGTTGGCTTAAATGTTGTGAGAGAGATC
TGCATGAGAATACCTTTGATGATGAATGAGGATCTGCTCCAAGACCTCGTTTTATACAAA
AAGTCCCATGAGAAAGCTGTTTCCATTGCTGCTCGTTCGCTGATCACATTGTTCAGAGAG
ATCTGTCCTTCATTGTTAGTCAAGAAAGATCGTGGCCGTCCTGTGGATCCAAAGGCTCGG
CCCAAAGCATTTGGAGAAGTCACTGTTGCTAGCAACGTTCCTGGTGCCGAGTTGCTAGAT
GAAAATATTTCTTCAGAAGGGGAAAGTTCGGACGATGAGTCTGATGGTTTTCACTCCGAT
GATGAGATGGACTTGACACCTGCCCCTCCTGGAACAGAAGAAAATATGGAGGGTTCATCT
GTTGCAAACAAACATGATGCCGATGGAGATACCAAAGAGGAAGATGACGCATCTGATGAT
GAAGATGGTACGGATCAAGATGACTCCAACAGTGATAGTGATGAACTAGACGATGACTCT
GATGTGGATGTGGGTACTGATATATCTGATGAAGACGAAGGTGACGACGGTGAACTGAAA
GAAAGCATAAATGGTTCAGAGGATGAAGCTTTAGACCAGAATGAAGACAGCGAAGAGGAA
GACAAGTCAAAAGGCAGTGGCTCTAAAGCGCAGAAGAGGAAGTTAAATGATTATATTGGA
CAGCTAAATTCTGCTGATGCAAGCCTTCGAGCTCTGAAGAGGTTAGCAACTGCCAAGAAG
GCTGAAGAACCATCTGATGAAACTGGTAAAATTCTATCCGATGAAGATTTCAAACGCATC
AAAGAACTCAAGGCTAAGAAAGAAGCGAAGCTGGCTTTGGCTCAGCATGGACTAATCAAG
GGTGTCGACACAAGGTCTGTAACCTTTAAGATGCCATCATCTGACCAGCTCAGCAGGAAG
CGTGTCGATCCACTTGAGCTTGAGGCTCACGTCAGGAGAAAGATGTCCAAGGAAGAAAGG
TTGGCGTTGGTGAAAGCTGGAAGAGAGGATAGAGGTCCTTACATGGCAAGGGCGGCCGTG
AAACAGAAAAAGACCGGTGGACTGAGCAATAAGCAGAAGCAGCACAAGAAGAGGATGCCA
CTGGCAGCGACTAGAGCCAAGGCAGCACGTTCCCGGCAGGAGAAGAAGCAGCAGCGCAAG
CGCTCCGGGAATCAGTTCAGGGGCCGCAAGGCGTGGAAGTGA

Peptide Sequence

PEP ID

Zm00001d002190_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:2:7649644:7654759:1 gene:Zm00001d002190 transcript:Zm00001d002190_T001 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:severe depolymerization of actin1 description:ARM repeat superfamily protein
Sequence

MPRKHAPAFTPEAASASSSGGAGQPHNLPVLQAKMKRDPEGYEEELRQLHRHFESSVFLF
QQQAALATTSSSGGGGEVAKELGDLALFLAHVAPFYPDDLADLPDQIGGLLDTNARGLPP
GLRSHLVQALVLLVNRKIVDLEDTMELFMELQVIGDRAVKKLAFSHIVHSIRRMNQKHKN
ESTNRKLQNVLFKFLQAEEESRAKRAFTILCDLHRRRVWFDERTTNAICDACFHPSSRIM
IAAISFLLGYENAPQEDDSDASSSEDEADQNPQILLSKQDVYKANHKGTSASKKKKKAKL
QRVIRSMKRQQRKSVEETGSSFYSPLTYLKDAQGFAEKLFSRLQKCNERFEVRMMMLKVI
ARTIGLHHLVLLNFYPYLQRYVQPHQRDVTTLLAAAVQACHDMVPPDAVEPLFKQIVNQF
VHDRSRPEAIAVGLNVVREICMRIPLMMNEDLLQDLVLYKKSHEKAVSIAARSLITLFRE
ICPSLLVKKDRGRPVDPKARPKAFGEVTVASNVPGAELLDENISSEGESSDDESDGFHSD
DEMDLTPAPPGTEENMEGSSVANKHDADGDTKEEDDASDDEDGTDQDDSNSDSDELDDDS
DVDVGTDISDEDEGDDGELKESINGSEDEALDQNEDSEEEDKSKGSGSKAQKRKLNDYIG
QLNSADASLRALKRLATAKKAEEPSDETGKILSDEDFKRIKELKAKKEAKLALAQHGLIK
GVDTRSVTFKMPSSDQLSRKRVDPLELEAHVRRKMSKEERLALVKAGREDRGPYMARAAV
KQKKTGGLSNKQKQHKKRMPLAATRAKAARSRQEKKQQRKRSGNQFRGRKAWK

Transcript Sequence

Transcript ID

Zm00001d002190_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:7649644:7654759:1 gene:Zm00001d002190 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:severe depolymerization of actin1 description:ARM repeat superfamily protein
Sequence

GCATGCCATTGCGGTATTGCCAACGTCGCTTCGCCCCTGAATCCCTCCGCTACCGCGCCT
AGGGTTTTAGGCTTTTAGCACACACCGGCGGCGCTGCATACCAAGGGCTTCCCCTGCCCG
CGCCGATGCCGCGCAAGCACGCGCCGGCGTTTACGCCGGAGGCAGCCTCCGCCTCTTCGT
CAGGCGGGGCTGGCCAGCCGCATAACCTCCCCGTGCTTCAGGCGAAGATGAAGCGTGACC
CGGAGGGCTACGAGGAGGAGCTCCGCCAGCTCCACCGCCACTTCGAGTCCTCGGTGTTCC
TATTCCAGCAGCAGGCGGCGCTGGCTACAACCTCGTCCTCGGGAGGCGGCGGGGAGGTGG
CCAAGGAGCTCGGGGACCTCGCCCTGTTCCTTGCCCACGTCGCGCCTTTCTACCCGGATG
ACCTCGCCGATTTGCCCGACCAGATTGGTGGCTTGCTCGACACCAACGCGCGTGGGCTGC
CGCCGGGGCTCAGGTCTCACCTCGTGCAGGCGCTTGTATTGCTGGTGAATCGGAAGATTG
TCGATCTTGAGGACACAATGGAGTTATTCATGGAGCTTCAAGTTATTGGAGATCGAGCTG
TAAAAAAGCTAGCATTTTCGCATATTGTACACAGTATCAGGAGGATGAACCAGAAGCACA
AGAATGAATCGACAAATCGTAAACTGCAAAACGTCCTTTTTAAATTCTTACAGGCTGAAG
AAGAGTCACGAGCAAAGAGAGCATTTACTATCCTTTGTGATCTTCACCGTCGGAGGGTCT
GGTTTGATGAACGCACAACAAATGCAATATGTGATGCTTGTTTCCACCCTTCCTCTAGGA
TTATGATAGCTGCTATTTCATTTCTTCTTGGATATGAAAATGCTCCACAAGAGGATGATA
GCGACGCATCAAGCAGTGAAGATGAAGCAGATCAAAACCCACAAATTCTTCTCAGTAAAC
AGGACGTTTATAAGGCAAATCACAAGGGTACGTCTGCTAGTAAAAAAAAGAAGAAAGCTA
AATTACAGCGGGTCATTCGTAGCATGAAAAGACAACAGCGGAAATCTGTCGAGGAAACTG
GTTCCAGTTTCTATTCACCCCTGACATATTTAAAAGATGCCCAGGGTTTTGCGGAGAAGC
TTTTCTCTCGGTTGCAGAAATGCAATGAGCGATTTGAGGTAAGGATGATGATGCTAAAAG
TAATCGCGAGGACCATTGGGCTGCATCACTTGGTTTTGTTGAACTTCTACCCGTATCTTC
AAAGATACGTTCAACCTCATCAACGAGATGTGACGACTCTACTCGCTGCAGCAGTTCAGG
CTTGCCATGATATGGTACCTCCAGATGCTGTTGAACCACTGTTCAAGCAGATAGTAAATC
AGTTTGTGCATGACCGTTCTCGTCCAGAGGCTATTGCTGTTGGCTTAAATGTTGTGAGAG
AGATCTGCATGAGAATACCTTTGATGATGAATGAGGATCTGCTCCAAGACCTCGTTTTAT
ACAAAAAGTCCCATGAGAAAGCTGTTTCCATTGCTGCTCGTTCGCTGATCACATTGTTCA
GAGAGATCTGTCCTTCATTGTTAGTCAAGAAAGATCGTGGCCGTCCTGTGGATCCAAAGG
CTCGGCCCAAAGCATTTGGAGAAGTCACTGTTGCTAGCAACGTTCCTGGTGCCGAGTTGC
TAGATGAAAATATTTCTTCAGAAGGGGAAAGTTCGGACGATGAGTCTGATGGTTTTCACT
CCGATGATGAGATGGACTTGACACCTGCCCCTCCTGGAACAGAAGAAAATATGGAGGGTT
CATCTGTTGCAAACAAACATGATGCCGATGGAGATACCAAAGAGGAAGATGACGCATCTG
ATGATGAAGATGGTACGGATCAAGATGACTCCAACAGTGATAGTGATGAACTAGACGATG
ACTCTGATGTGGATGTGGGTACTGATATATCTGATGAAGACGAAGGTGACGACGGTGAAC
TGAAAGAAAGCATAAATGGTTCAGAGGATGAAGCTTTAGACCAGAATGAAGACAGCGAAG
AGGAAGACAAGTCAAAAGGCAGTGGCTCTAAAGCGCAGAAGAGGAAGTTAAATGATTATA
TTGGACAGCTAAATTCTGCTGATGCAAGCCTTCGAGCTCTGAAGAGGTTAGCAACTGCCA
AGAAGGCTGAAGAACCATCTGATGAAACTGGTAAAATTCTATCCGATGAAGATTTCAAAC
GCATCAAAGAACTCAAGGCTAAGAAAGAAGCGAAGCTGGCTTTGGCTCAGCATGGACTAA
TCAAGGGTGTCGACACAAGGTCTGTAACCTTTAAGATGCCATCATCTGACCAGCTCAGCA
GGAAGCGTGTCGATCCACTTGAGCTTGAGGCTCACGTCAGGAGAAAGATGTCCAAGGAAG
AAAGGTTGGCGTTGGTGAAAGCTGGAAGAGAGGATAGAGGTCCTTACATGGCAAGGGCGG
CCGTGAAACAGAAAAAGACCGGTGGACTGAGCAATAAGCAGAAGCAGCACAAGAAGAGGA
TGCCACTGGCAGCGACTAGAGCCAAGGCAGCACGTTCCCGGCAGGAGAAGAAGCAGCAGC
GCAAGCGCTCCGGGAATCAGTTCAGGGGCCGCAAGGCGTGGAAGTGAGAGAGCCTCTGCT
GCCGCTTTGCGATTCATCTAGCCGAATGGCCAATTTTTTTGACTCTTTGTATCTTCTTCT
GCCAGTTAATGTTTCCATATAATACCTTGATTCTATGAGAATGCTTTTCCATATTTCGCC
GTTGGTATCTGCTCCGGTCCCCCCCTCCGTATGGTCCTGGAATGTGATTCGTCTTGGGC