Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d001984_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:2:3952217:3954530:-1 gene:Zm00001d001984 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable amino acid permease 7
Sequence

ATGGCGCAGCACCACGGCAGCCACTCCCTGGAGGTCGGCGGCGTCGGCGCCGGCGGCGTC
GAGCTCGACGACGACGGCCACGCCGCGCGCACCGGCAACCTATGGACCTGCTTCGCGCAC
ATCATCACCGCCGTGATCGGCTGCGGCGTGCTGGCGCTCTCGTGGAGCGTCGCGCAGCTG
GGCTGGGTGGGCGGCCCTGTCGCCATGCTCTGCTTCGCCTTCGTCACCTACCTCTCCGCC
TTCCTCCTGTCCCACTGCTACAGGTCCCCTGCCTCCGATGATGGCTCCCTGAAACGCCAG
AGGAACTACACCTACATGGACGCCGTCAGGACGCACCTGGGGGAGAAGCGCACCTGGCTC
TGCGGCCTGTTCCAGTACCTCAACATGTACGGGACCGCAATCGCCTACACCATCACCACG
GCGACCTGTCTCAGGGCGATCGTGAGGGCCAACTGCTACCACAGCCAGGGCCACAGCGCT
CCCTGCGGCGCCGGCGGCGACCACCTCTACATGCTGCTCTTCGGGGCGGCCCAGGCGGTG
CTGTCCCTCATACCCAACTTCCACAGCATGGCCTGGCTCTCCGCCGTCGCCGCCGTCATG
TCCTTCACCTACGCCACCATCGGCCTCGGCCTCGGCCTCGCCAAGACCATAGAAAATGGG
GCGATCAAAGGAAGCGTCGCCGGAGTTCCGATGAGCACCGCGCCGCAGAAAGTCTGGCGA
GTCGCGCAGGCCATCGGCGACATCGCGTTCGCCTACCCGTACACCATTGTCCTACTGGAG
ATACAGGACACGCTCAAATCGCCGCCACCAGAGAGCGAGACGATGCAGAAGGGGAACGTG
CTCGCGGTCCTGGCCACCACGTTCTTCTACCTCGCCGTGGGGTGCTTCGGGTACGCCGCC
TTCGGCAACGCTGCGCCGGGCAACCTGCTCACCGGCTTCGGCTTCTACGAGCCGTACTGG
CTCATCGACTTCGCCAACGCCTGCATCGTGCTCCACCTGCTTGGTGGCTACCAGATGTTC
AGCCAGCAGATCTTCACCTTCGCGGACCGGTCCTTGGCGGCCAGGTTCCCGAACAGCGCG
TTCGTGAACAAATCCTACGCCGTGAAGGTGCCCGGCGCGCCGGCGTCGTGGAGCTACAGC
CTCAACCTGCAGCGGCTGTGTTTCCGGACGGCGTACGTGGCGAGCACCACGGGGCTGGCC
CTCCTCTTCCCCTACTTCAACGAGGTGCTGGGCGTGCTGGGCGCCGTCGTCTTCTGGCCC
CTCGCCATCTACCTCCCCGTCGAGATGTACTGCGTCCAGCGCGGGGTCCTGCCGTGGACG
CGGACGTGGGTCGCGCTTCAGGCATTCAGCGTCGTCTGCTTCGTCGTCGGCACCTTCGCC
TTCGTCGGCTCCGTCGAGGGAGTCATCCGCAAGAGGCTCGGCTAG

Peptide Sequence

PEP ID

Zm00001d001984_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:2:3952217:3954530:-1 gene:Zm00001d001984 transcript:Zm00001d001984_T002 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable amino acid permease 7
Sequence

MAQHHGSHSLEVGGVGAGGVELDDDGHAARTGNLWTCFAHIITAVIGCGVLALSWSVAQL
GWVGGPVAMLCFAFVTYLSAFLLSHCYRSPASDDGSLKRQRNYTYMDAVRTHLGEKRTWL
CGLFQYLNMYGTAIAYTITTATCLRAIVRANCYHSQGHSAPCGAGGDHLYMLLFGAAQAV
LSLIPNFHSMAWLSAVAAVMSFTYATIGLGLGLAKTIENGAIKGSVAGVPMSTAPQKVWR
VAQAIGDIAFAYPYTIVLLEIQDTLKSPPPESETMQKGNVLAVLATTFFYLAVGCFGYAA
FGNAAPGNLLTGFGFYEPYWLIDFANACIVLHLLGGYQMFSQQIFTFADRSLAARFPNSA
FVNKSYAVKVPGAPASWSYSLNLQRLCFRTAYVASTTGLALLFPYFNEVLGVLGAVVFWP
LAIYLPVEMYCVQRGVLPWTRTWVALQAFSVVCFVVGTFAFVGSVEGVIRKRLG

Transcript Sequence

Transcript ID

Zm00001d001984_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:3952217:3954530:-1 gene:Zm00001d001984 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable amino acid permease 7
Sequence

GCTCACTGTACTAGTCACACGATTGGCTACACGACACGAGCTCAGAGCTCTCAGGTTTCC
CAACGCCGGCTGCTGGCCAATGGCGCAGCACCACGGCAGCCACTCCCTGGAGGTCGGCGG
CGTCGGCGCCGGCGGCGTCGAGCTCGACGACGACGGCCACGCCGCGCGCACCGGCAACCT
ATGGACCTGCTTCGCGCACATCATCACCGCCGTGATCGGCTGCGGCGTGCTGGCGCTCTC
GTGGAGCGTCGCGCAGCTGGGCTGGGTGGGCGGCCCTGTCGCCATGCTCTGCTTCGCCTT
CGTCACCTACCTCTCCGCCTTCCTCCTGTCCCACTGCTACAGGTCCCCTGCCTCCGATGA
TGGCTCCCTGAAACGCCAGAGGAACTACACCTACATGGACGCCGTCAGGACGCACCTGGG
GGAGAAGCGCACCTGGCTCTGCGGCCTGTTCCAGTACCTCAACATGTACGGGACCGCAAT
CGCCTACACCATCACCACGGCGACCTGTCTCAGGGCGATCGTGAGGGCCAACTGCTACCA
CAGCCAGGGCCACAGCGCTCCCTGCGGCGCCGGCGGCGACCACCTCTACATGCTGCTCTT
CGGGGCGGCCCAGGCGGTGCTGTCCCTCATACCCAACTTCCACAGCATGGCCTGGCTCTC
CGCCGTCGCCGCCGTCATGTCCTTCACCTACGCCACCATCGGCCTCGGCCTCGGCCTCGC
CAAGACCATAGAAAATGGGGCGATCAAAGGAAGCGTCGCCGGAGTTCCGATGAGCACCGC
GCCGCAGAAAGTCTGGCGAGTCGCGCAGGCCATCGGCGACATCGCGTTCGCCTACCCGTA
CACCATTGTCCTACTGGAGATACAGGACACGCTCAAATCGCCGCCACCAGAGAGCGAGAC
GATGCAGAAGGGGAACGTGCTCGCGGTCCTGGCCACCACGTTCTTCTACCTCGCCGTGGG
GTGCTTCGGGTACGCCGCCTTCGGCAACGCTGCGCCGGGCAACCTGCTCACCGGCTTCGG
CTTCTACGAGCCGTACTGGCTCATCGACTTCGCCAACGCCTGCATCGTGCTCCACCTGCT
TGGTGGCTACCAGATGTTCAGCCAGCAGATCTTCACCTTCGCGGACCGGTCCTTGGCGGC
CAGGTTCCCGAACAGCGCGTTCGTGAACAAATCCTACGCCGTGAAGGTGCCCGGCGCGCC
GGCGTCGTGGAGCTACAGCCTCAACCTGCAGCGGCTGTGTTTCCGGACGGCGTACGTGGC
GAGCACCACGGGGCTGGCCCTCCTCTTCCCCTACTTCAACGAGGTGCTGGGCGTGCTGGG
CGCCGTCGTCTTCTGGCCCCTCGCCATCTACCTCCCCGTCGAGATGTACTGCGTCCAGCG
CGGGGTCCTGCCGTGGACGCGGACGTGGGTCGCGCTTCAGGCATTCAGCGTCGTCTGCTT
CGTCGTCGGCACCTTCGCCTTCGTCGGCTCCGTCGAGGGAGTCATCCGCAAGAGGCTCGG
CTAGTTGTGGTATTAGCGCCTTTTCTGTCGTCAACCATGTCATGAATGGTGGAAGTGTGT
AAAGAGAGTGTACTGTATCTAAGTTTTTTTTATTTCCCTGTGTTCGCTTAGCCATGAGCC
CATGACCATGATGATTGATGAATATATCTACCCGTGCGTGTTTAGAT