Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d001978_T134
CDS Infomation

cds chromosome:B73_RefGen_v4:2:3816320:3823861:1 gene:Zm00001d001978 gene_biotype:protein_coding transcript_biotype:protein_coding description:MAP3K epsilon protein kinase 1
Sequence

ATGAATGGTGGAAAACTAATTGAATTTGCCATGCAGCTAGAAAATATTGATGCATCGGGT
TTTGGTGAACATATTCCTGGAGAGAGTCTTTTCCCTCTGCAGTCTGTGGAGTACAGCAAA
ATAGTAGCACAACTGAAACCAGGGGAAAGTGAAGATGTAATACTGTTGGCGTGCCAAAAG
CTTCTATCAATCTTCAGTCACCGGCCTGAGCAAAAACAGATCTATATGGCACAGAATGGT
TTCCTCCCGCTGATGGAACTCCTTGAAATTCCTAAAAATCGTATTTTATGCTCAGTTCTG
CAGCTTATCAACAACATTGTAAAAGATAGTACAGGCTTCCTGGAAAATGCTTGCCTTGTT
GGCCTTATTCCAGTGGTGATGAATTTTGCAGAACCAAATCGCCCAAAGGATGTTCGGGTG
CAAGCATCCTTGTTTCTTCAGCAGCTTTGTCAAGCCAGCACCTTGACATTGCAAATGTTC
ATTGCATGTCAAGGGATCCCTGTTTTGGTAAGCTTTATGGAGCCTGACTATGCAAAATAC
AGGGATATGGTTCATCTTGCAATTGACGGCATTTGGCAGGTCTTTAAGCTCCAGCACTCA
ACTCCAAGAAATGACTTCTGCCGTATAGCAGCAAAAAATGGGATGCTTCCTAGGCTGGTG
AATACACTATATAGCTTGAACGAAGCAACACGATTTGCCTCAGTCTCAGGGTCAGGTGCT
TCAGTAACACAGAATGGCTCAACCCCCCGACGAAGATCTGGCCAATTAGACCCTTCAGTT
CTTGAAAGTTGCAAGGCGAGGCTGGATCATCATCATTCATCTGGTTCTTTGCAATCTCTA
CAAGCAGATGCAGATAAGCACCACATATTAATGGACTCCTCGTCATCTCCTAGGTTCAGC
GACAAAACAAGCAGTAACTTGGAGAGGAATGAGAACGACTTGGTTATTCGGCCACAGAGG
CTTAGTGTTTCTGCCGGAAGGACATCTACAGACAGATCACCGAAGCACATAGAACTAGTT
TCAAATGGTCATAATAACAGTCAAAATGACCAGGTCCGACCTCTACTGAGTTTATTGGAG
AAAGAACCACCTTCTCGACATGTATCTGGACAACTTGATTATGTTCGCCATATATCTGGT
TTGGAAAGGCATGAAACCATTCTGCCACTATTACATACATCGACAGAGAGGAAAACGAAT
GGTGAACTTGACTTAATGATGGATTTTGCTGAGGTTTCTAGACATGGAAGGGAGAATGGC
CATCTGGACTCTAGTATAAAAGCTTCAAATAGAGTTCATAGTATGAAATATGCACCTTCA
GCAAGTGCGTCTAATGAAGGGGCATCAACTTCTGGAGCTGCATCACAAACTGCATCTGGT
GTGTTATCAGGATCAGGGGTGCTCAATTTAAGACCTGGGAGTACAACATCATCAGGCCCA
TTAGCTCAGATGTTCTCTTCCATGAGCGCAGATGTGGCACGTGAATATCTTGAGAAAGTA
GCAGATCTTCTTTTGGAGTTTGCACAGGCAGACACCGTGGTAAAATCTCTGATGGCCAGC
CAAAGCCTTCTTACAAGGGTTTTCCAAATGTTTAACAAGATAGAGCCTCCTATTCTTCTT
AAGGTCCTTAATGCTTTGTTCAACCTTTGCAAAATTAATAAAAGAAGACAGGAACAAGCA
GCCGAAAATGGAATCATCCCTCACTTGATGAAATTTGTCATGTCAGACTCACCTTTGCGG
CAGTATGCCCTGCCTTTGCTGTGTGATATGGCTCATGCTTCTCGCAACTCTAGAGAGCAG
TTGAGGGTTCATGGAGGACTAGATGTGTACTTAAATCTGCTGGAGGATGATGCATGGGCA
TGCACGGCATTAGATTCTATTGCTGTTTGTTTGGCTCACGATAATGATCACAGAAAAGTG
GAACAAGCACTGTTGAAAAAAGAGGCCATTCAGAAATTAGTGAAGTTCTTCCAAGATTGC
CCAGAACAGTATTTTGGCCATATATTGGACGCTTTCTTGAAGATAATCACGAAATCTTCT
AGGCTAAATACAGCAATGGCTACCAATGGTTTAACAACATTGCTCATTGCAAGACTTGAC
CATCGAGAAGCTATTGCCCGCTTGACTCTGCTGAAACTCATAAAGGTTGTCTATGAGCAC
CATCCTCGACCAAAACAGCTCATAGTAGAGAATGACCTCCCTCAGAAGCTACAGAACCTC
ATTGAAGAGCGCAGGGATGGACAACGGGGCGGCCAACAAGTGTTGGTCAAACAAATGGCC
ACCTCATTGCTGAAAGCGCTGCACATCAATACAGTATTGTGA

Peptide Sequence

PEP ID

Zm00001d001978_P134
PEP Infomation

pep chromosome:B73_RefGen_v4:2:3816320:3823861:1 gene:Zm00001d001978 transcript:Zm00001d001978_T134 gene_biotype:protein_coding transcript_biotype:protein_coding description:MAP3K epsilon protein kinase 1
Sequence

MNGGKLIEFAMQLENIDASGFGEHIPGESLFPLQSVEYSKIVAQLKPGESEDVILLACQK
LLSIFSHRPEQKQIYMAQNGFLPLMELLEIPKNRILCSVLQLINNIVKDSTGFLENACLV
GLIPVVMNFAEPNRPKDVRVQASLFLQQLCQASTLTLQMFIACQGIPVLVSFMEPDYAKY
RDMVHLAIDGIWQVFKLQHSTPRNDFCRIAAKNGMLPRLVNTLYSLNEATRFASVSGSGA
SVTQNGSTPRRRSGQLDPSVLESCKARLDHHHSSGSLQSLQADADKHHILMDSSSSPRFS
DKTSSNLERNENDLVIRPQRLSVSAGRTSTDRSPKHIELVSNGHNNSQNDQVRPLLSLLE
KEPPSRHVSGQLDYVRHISGLERHETILPLLHTSTERKTNGELDLMMDFAEVSRHGRENG
HLDSSIKASNRVHSMKYAPSASASNEGASTSGAASQTASGVLSGSGVLNLRPGSTTSSGP
LAQMFSSMSADVAREYLEKVADLLLEFAQADTVVKSLMASQSLLTRVFQMFNKIEPPILL
KVLNALFNLCKINKRRQEQAAENGIIPHLMKFVMSDSPLRQYALPLLCDMAHASRNSREQ
LRVHGGLDVYLNLLEDDAWACTALDSIAVCLAHDNDHRKVEQALLKKEAIQKLVKFFQDC
PEQYFGHILDAFLKIITKSSRLNTAMATNGLTTLLIARLDHREAIARLTLLKLIKVVYEH
HPRPKQLIVENDLPQKLQNLIEERRDGQRGGQQVLVKQMATSLLKALHINTVL

Transcript Sequence

Transcript ID

Zm00001d001978_T134
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:3816320:3823861:1 gene:Zm00001d001978 gene_biotype:protein_coding transcript_biotype:protein_coding description:MAP3K epsilon protein kinase 1
Sequence

GTCCATGAATGGTGGAAAACTAATTGAATTTGCCATGCAGCTAGAAAATATTGATGCATC
GGGTTTTGGTGAACATATTCCTGGAGAGAGTCTTTTCCCTCTGCAGTCTGTGGAGTACAG
CAAAATAGTAGCACAACTGAAACCAGGGGAAAGTGAAGATGTAATACTGTTGGCGTGCCA
AAAGCTTCTATCAATCTTCAGTCACCGGCCTGAGCAAAAACAGATCTATATGGCACAGAA
TGGTTTCCTCCCGCTGATGGAACTCCTTGAAATTCCTAAAAATCGTATTTTATGCTCAGT
TCTGCAGCTTATCAACAACATTGTAAAAGATAGTACAGGCTTCCTGGAAAATGCTTGCCT
TGTTGGCCTTATTCCAGTGGTGATGAATTTTGCAGAACCAAATCGCCCAAAGGATGTTCG
GGTGCAAGCATCCTTGTTTCTTCAGCAGCTTTGTCAAGCCAGCACCTTGACATTGCAAAT
GTTCATTGCATGTCAAGGGATCCCTGTTTTGGTAAGCTTTATGGAGCCTGACTATGCAAA
ATACAGGGATATGGTTCATCTTGCAATTGACGGCATTTGGCAGGTCTTTAAGCTCCAGCA
CTCAACTCCAAGAAATGACTTCTGCCGTATAGCAGCAAAAAATGGGATGCTTCCTAGGCT
GGTGAATACACTATATAGCTTGAACGAAGCAACACGATTTGCCTCAGTCTCAGGGTCAGG
TGCTTCAGTAACACAGAATGGCTCAACCCCCCGACGAAGATCTGGCCAATTAGACCCTTC
AGTTCTTGAAAGTTGCAAGGCGAGGCTGGATCATCATCATTCATCTGGTTCTTTGCAATC
TCTACAAGCAGATGCAGATAAGCACCACATATTAATGGACTCCTCGTCATCTCCTAGGTT
CAGCGACAAAACAAGCAGTAACTTGGAGAGGAATGAGAACGACTTGGTTATTCGGCCACA
GAGGCTTAGTGTTTCTGCCGGAAGGACATCTACAGACAGATCACCGAAGCACATAGAACT
AGTTTCAAATGGTCATAATAACAGTCAAAATGACCAGGTCCGACCTCTACTGAGTTTATT
GGAGAAAGAACCACCTTCTCGACATGTATCTGGACAACTTGATTATGTTCGCCATATATC
TGGTTTGGAAAGGCATGAAACCATTCTGCCACTATTACATACATCGACAGAGAGGAAAAC
GAATGGTGAACTTGACTTAATGATGGATTTTGCTGAGGTTTCTAGACATGGAAGGGAGAA
TGGCCATCTGGACTCTAGTATAAAAGCTTCAAATAGAGTTCATAGTATGAAATATGCACC
TTCAGCAAGTGCGTCTAATGAAGGGGCATCAACTTCTGGAGCTGCATCACAAACTGCATC
TGGTGTGTTATCAGGATCAGGGGTGCTCAATTTAAGACCTGGGAGTACAACATCATCAGG
CCCATTAGCTCAGATGTTCTCTTCCATGAGCGCAGATGTGGCACGTGAATATCTTGAGAA
AGTAGCAGATCTTCTTTTGGAGTTTGCACAGGCAGACACCGTGGTAAAATCTCTGATGGC
CAGCCAAAGCCTTCTTACAAGGGTTTTCCAAATGTTTAACAAGATAGAGCCTCCTATTCT
TCTTAAGGTCCTTAATGCTTTGTTCAACCTTTGCAAAATTAATAAAAGAAGACAGGAACA
AGCAGCCGAAAATGGAATCATCCCTCACTTGATGAAATTTGTCATGTCAGACTCACCTTT
GCGGCAGTATGCCCTGCCTTTGCTGTGTGATATGGCTCATGCTTCTCGCAACTCTAGAGA
GCAGTTGAGGGTTCATGGAGGACTAGATGTGTACTTAAATCTGCTGGAGGATGATGCATG
GGCATGCACGGCATTAGATTCTATTGCTGTTTGTTTGGCTCACGATAATGATCACAGAAA
AGTGGAACAAGCACTGTTGAAAAAAGAGGCCATTCAGAAATTAGTGAAGTTCTTCCAAGA
TTGCCCAGAACAGTATTTTGGCCATATATTGGACGCTTTCTTGAAGATAATCACGAAATC
TTCTAGGCTAAATACAGCAATGGCTACCAATGGTTTAACAACATTGCTCATTGCAAGACT
TGACCATCGAGAAGCTATTGCCCGCTTGACTCTGCTGAAACTCATAAAGGTTGTCTATGA
GCACCATCCTCGACCAAAACAGCTCATAGTAGAGAATGACCTCCCTCAGAAGCTACAGAA
CCTCATTGAAGAGCGCAGGGATGGACAACGGGGCGGCCAACAAGTGTTGGTCAAACAAAT
GGCCACCTCATTGCTGAAAGCGCTGCACATCAATACAGTATTGTGATATTGGTGGATCAT
ATGTTTTCCTCTCAAGTTGTATATGCTTGCCCTAGAGGAGAAGGTGCCTTTTCCTTTTGC
TCTGCTGTGGTGGTTTCTCATGAGCACCAGACTCATCTGTTGTACCTGATCCCTCTTTTT
TCGGGAGAAAGGTTTTTTAGGTGCAGGATGAAATGGACGTTCTGTCCTTCAGTGTTGTTT
ATATTTAGAGTGTTAGTGAGGACATTGTAAATTAAGACATATAATTAATAAACAAAACCC
ATGTTGAGAT