Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d001953_T005
CDS Infomation

cds chromosome:B73_RefGen_v4:2:3439285:3444350:-1 gene:Zm00001d001953 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein IQ-DOMAIN 32
Sequence

ATGGCGCGGTCCAAGAACGGCTGCCTCAAGATCCTTGTCTGCGCCGGCTCCGGATCCGAT
CCCTCCGCCGGCTCAGACGCCGACGACCACCCGGACGAGAACAACGCCATATCAGATAAA
AGCAGATGGAGCTTCCGTAGGAGGTCTACAAGGCACCGAGTTTTGAAGAACTCTGATATC
TCAGAACCTGAGACTCTTAGTTCCAGCAAAGCAAAGGCTGACATTACACCGAGCAACAAT
GTTTATACTTCAACATATTCTTATGCCTCGGAGAAGCCTCTGCAACAAGACAAGCCAGAT
GAGAAGACTCTGCATCAAGAGAAGCCAGAGGAGAAACCTCTGTATCAAGGAAACTCTGAT
GAAAAGCTGATGGAGAAGCCAAGTGAAAAGCCTACTGACAAACTTATGGAAGAACCAGCT
GACCAGATAATTGAAAAATCAATTGAACTACCCACTCAAAGGATAACCGAAACACCAACT
GATGAGCCAGCTGAAAAAATAAATGTTGCACCAACTGAAGAACCAGCTGGAAAAATAACA
GAGACGGCATCTGAAAATACAGCCGAAGGGTCAATAAAAAATGCAACAGAAGAGACACCC
GAAAGGGCAGTTGAGGAACTAATTGAAGAGGCAGATGAAAGTATTTCCGTCTCATCAACT
GTGCTGAAGGAGGAGGAAAACACCTCACTTGTTGAAGGAAGCAGTGGAGACCCGGAGGAA
GATCATCTGGAGTCTGCAGCTACTAATCTTCAGCCTAGGAGTGACACTTGCATTGCAAGG
GAAGAGCTGCTGAATCAGAAGGATCTGGTGAAACTGCAAGCTGTTATCCGTGGACATCTA
GTTAGAAAGCAGGCTTCAGAATCTTTACAATGCTTGCTTGCGATTATTAAAATTCAAGGG
TTGATCAGGGCTCATCAAGCACAACATTCACCAGGAAAGATTCAGGAGACTATTGTTCAT
TCTTCAGGTGAGAAATTGCTTCGCAATGGATTTGCTCTCAAGCTCATGGACAACACACCA
ACTTCAAAATCCATTCGCATAAAATGTGATCCTTCAGAATCTGATGTTACATGGGGATGG
ATGGAGAGGTGGACAGCCTTAATTCCACCGATCACTGTGGTGCACCTGCCAGAGCATAAA
GAAAATAGTGAGTTGATGGGTGAAACTGTGACCGAACAAGTGACTGAACATGCTCAGTGT
GATGAAGACATTGTTCCTTTGGATTCAGACCTATCTTTCCCAAAGTTGGTGGCTGATGAT
GTGAAAGAAACAGTAGAGACATCTGATTTTAGTGCCTTGGAGGCTCCTGCAAGTGTCCCA
GATGAAAGCCCTAAGATGGAAATGAAACATGATCCTGAATCGGAGTTGATCGAAACTACT
AATGCAGATGCTGATCATGTAACTGACCAAAAGGCTGAAAATGATGTGGACGAGCCTTTT
ATGTCCTTGGATCAACAATATGCCCAAGCTGATGATGCATCAAGGAATCCCTGTCCACTC
CCTGGAAAATTTGAACCGTCCAATGAGGACAGTGGTGACGCATACAATTCTGAGCAGACA
CTGGAGATGGAAGGTAAAAGGTTTGTGGCAAGAAAGCCATGCAATCCAGCCTTTGCTGCT
GCCCAATTGAAATTTGAAGAGCTGAGTACAAATTCGACAGTCAGCAGGTCCAGCAGCCCA
CCGCATCTGGATGGGGTGAGCAAGCCAAGGATGCACACTCCTAGTTCGCAAGAAGATTAC
ACGCCAAAGCAAGATGGCACAGGCATACAAGAAAGCTCAGCTGGTCATGATACTAAAATG
AGAATTGCTGCATCAGAATGTGGGACTGAAATATCAATTTCATCCACACTGGACTCACCA
GACAGATCAGAAGGTGATGGTGGGGAGATAGTGTTGGAGATTGGAGCTCTGGAAAACAGA
AACTATGTCACTGGCAAAGCTGATAAAGACTCCAGTATTGTCCATCCCGGGGTAAAAGAT
GCTCCTGAAGCAGAAGCCCAGCCGCAGAAGGAAGTAGAAGAGAATGGGCATGTTCCTGCC
CTTGAAACGGAAGCCCAGCCACAAAAGGAGCCACATACTGAACCGGAAGTGGCAGATTTG
CATGGACAATTGGAAAAATCGGTCACATCTTATGCCACACCTGAAGGGACTCCAATGAGC
CGAACGACCACCATTCCGGAGTCTCATGGGACACCGTCAAGTGAGGTCTCTGTTAACACC
AAAAGGAGCAGGAGCAACAAGCCCAAGTCCCACGCGAGCAAGAGGTCGCTGGCTAGTCCA
GGCAGCGACTCAGTTGGACGGAGCAGCACCGACAAGTTTTCGAAGGAATCAAGGCATGCC
AAGAGAGAGAGCTCCTCAAGCAAAGCTGCTAAATCCGACCAGGGCGATCAAGAACCTCGT
GTAAGCAACAGCAACAGCAACCCGTTGCCTAGCTACATGCAGTTCACAGAGTCCGCAAGA
GCC

Peptide Sequence

PEP ID

Zm00001d001953_P005
PEP Infomation

pep chromosome:B73_RefGen_v4:2:3439285:3444350:-1 gene:Zm00001d001953 transcript:Zm00001d001953_T005 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein IQ-DOMAIN 32
Sequence

MARSKNGCLKILVCAGSGSDPSAGSDADDHPDENNAISDKSRWSFRRRSTRHRVLKNSDI
SEPETLSSSKAKADITPSNNVYTSTYSYASEKPLQQDKPDEKTLHQEKPEEKPLYQGNSD
EKLMEKPSEKPTDKLMEEPADQIIEKSIELPTQRITETPTDEPAEKINVAPTEEPAGKIT
ETASENTAEGSIKNATEETPERAVEELIEEADESISVSSTVLKEEENTSLVEGSSGDPEE
DHLESAATNLQPRSDTCIAREELLNQKDLVKLQAVIRGHLVRKQASESLQCLLAIIKIQG
LIRAHQAQHSPGKIQETIVHSSGEKLLRNGFALKLMDNTPTSKSIRIKCDPSESDVTWGW
MERWTALIPPITVVHLPEHKENSELMGETVTEQVTEHAQCDEDIVPLDSDLSFPKLVADD
VKETVETSDFSALEAPASVPDESPKMEMKHDPESELIETTNADADHVTDQKAENDVDEPF
MSLDQQYAQADDASRNPCPLPGKFEPSNEDSGDAYNSEQTLEMEGKRFVARKPCNPAFAA
AQLKFEELSTNSTVSRSSSPPHLDGVSKPRMHTPSSQEDYTPKQDGTGIQESSAGHDTKM
RIAASECGTEISISSTLDSPDRSEGDGGEIVLEIGALENRNYVTGKADKDSSIVHPGVKD
APEAEAQPQKEVEENGHVPALETEAQPQKEPHTEPEVADLHGQLEKSVTSYATPEGTPMS
RTTTIPESHGTPSSEVSVNTKRSRSNKPKSHASKRSLASPGSDSVGRSSTDKFSKESRHA
KRESSSSKAAKSDQGDQEPRVSNSNSNPLPSYMQFTESARA

Transcript Sequence

Transcript ID

Zm00001d001953_T005
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:3439285:3444350:-1 gene:Zm00001d001953 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein IQ-DOMAIN 32
Sequence

ATATAAAAACGTACAGGAAAGGAGCGGAAAGAGAAGCGGAGTACGGCCCGAGGAGGAGGG
GAGGCCTCCAACCAAAAATATAAAAACGCCGTGCAGAGCTGCACAGGCACTGGCCGCAAG
CGAACAAGGCAGACGCGCAGCAGAGCGGCCATCCACTGCCGTCCTGTTCCGCACCCAGGC
TCCAGAAACGCACGCGCGCTCGCTCCGCGGAGCAGAGCACTTGGCCACTTGACTCTGACT
GACTGAAGCGGCGGCGGTCGCGATCAGCCCGCTCCATGGCGCGGTCCAAGAACGGCTGCC
TCAAGATCCTTGTCTGCGCCGGCTCCGGATCCGATCCCTCCGCCGGCTCAGACGCCGACG
ACCACCCGGACGAGAACAACGCCATATCAGATAAAAGCAGATGGAGCTTCCGTAGGAGGT
CTACAAGGCACCGAGTTTTGAAGAACTCTGATATCTCAGAACCTGAGACTCTTAGTTCCA
GCAAAGCAAAGGCTGACATTACACCGAGCAACAATGTTTATACTTCAACATATTCTTATG
CCTCGGAGAAGCCTCTGCAACAAGACAAGCCAGATGAGAAGACTCTGCATCAAGAGAAGC
CAGAGGAGAAACCTCTGTATCAAGGAAACTCTGATGAAAAGCTGATGGAGAAGCCAAGTG
AAAAGCCTACTGACAAACTTATGGAAGAACCAGCTGACCAGATAATTGAAAAATCAATTG
AACTACCCACTCAAAGGATAACCGAAACACCAACTGATGAGCCAGCTGAAAAAATAAATG
TTGCACCAACTGAAGAACCAGCTGGAAAAATAACAGAGACGGCATCTGAAAATACAGCCG
AAGGGTCAATAAAAAATGCAACAGAAGAGACACCCGAAAGGGCAGTTGAGGAACTAATTG
AAGAGGCAGATGAAAGTATTTCCGTCTCATCAACTGTGCTGAAGGAGGAGGAAAACACCT
CACTTGTTGAAGGAAGCAGTGGAGACCCGGAGGAAGATCATCTGGAGTCTGCAGCTACTA
ATCTTCAGCCTAGGAGTGACACTTGCATTGCAAGGGAAGAGCTGCTGAATCAGAAGGATC
TGGTGAAACTGCAAGCTGTTATCCGTGGACATCTAGTTAGAAAGCAGGCTTCAGAATCTT
TACAATGCTTGCTTGCGATTATTAAAATTCAAGGGTTGATCAGGGCTCATCAAGCACAAC
ATTCACCAGGAAAGATTCAGGAGACTATTGTTCATTCTTCAGGTGAGAAATTGCTTCGCA
ATGGATTTGCTCTCAAGCTCATGGACAACACACCAACTTCAAAATCCATTCGCATAAAAT
GTGATCCTTCAGAATCTGATGTTACATGGGGATGGATGGAGAGGTGGACAGCCTTAATTC
CACCGATCACTGTGGTGCACCTGCCAGAGCATAAAGAAAATAGTGAGTTGATGGGTGAAA
CTGTGACCGAACAAGTGACTGAACATGCTCAGTGTGATGAAGACATTGTTCCTTTGGATT
CAGACCTATCTTTCCCAAAGTTGGTGGCTGATGATGTGAAAGAAACAGTAGAGACATCTG
ATTTTAGTGCCTTGGAGGCTCCTGCAAGTGTCCCAGATGAAAGCCCTAAGATGGAAATGA
AACATGATCCTGAATCGGAGTTGATCGAAACTACTAATGCAGATGCTGATCATGTAACTG
ACCAAAAGGCTGAAAATGATGTGGACGAGCCTTTTATGTCCTTGGATCAACAATATGCCC
AAGCTGATGATGCATCAAGGAATCCCTGTCCACTCCCTGGAAAATTTGAACCGTCCAATG
AGGACAGTGGTGACGCATACAATTCTGAGCAGACACTGGAGATGGAAGGTAAAAGGTTTG
TGGCAAGAAAGCCATGCAATCCAGCCTTTGCTGCTGCCCAATTGAAATTTGAAGAGCTGA
GTACAAATTCGACAGTCAGCAGGTCCAGCAGCCCACCGCATCTGGATGGGGTGAGCAAGC
CAAGGATGCACACTCCTAGTTCGCAAGAAGATTACACGCCAAAGCAAGATGGCACAGGCA
TACAAGAAAGCTCAGCTGGTCATGATACTAAAATGAGAATTGCTGCATCAGAATGTGGGA
CTGAAATATCAATTTCATCCACACTGGACTCACCAGACAGATCAGAAGGTGATGGTGGGG
AGATAGTGTTGGAGATTGGAGCTCTGGAAAACAGAAACTATGTCACTGGCAAAGCTGATA
AAGACTCCAGTATTGTCCATCCCGGGGTAAAAGATGCTCCTGAAGCAGAAGCCCAGCCGC
AGAAGGAAGTAGAAGAGAATGGGCATGTTCCTGCCCTTGAAACGGAAGCCCAGCCACAAA
AGGAGCCACATACTGAACCGGAAGTGGCAGATTTGCATGGACAATTGGAAAAATCGGTCA
CATCTTATGCCACACCTGAAGGGACTCCAATGAGCCGAACGACCACCATTCCGGAGTCTC
ATGGGACACCGTCAAGTGAGGTCTCTGTTAACACCAAAAGGAGCAGGAGCAACAAGCCCA
AGTCCCACGCGAGCAAGAGGTCGCTGGCTAGTCCAGGCAGCGACTCAGTTGGACGGAGCA
GCACCGACAAGTTTTCGAAGGAATCAAGGCATGCCAAGAGAGAGAGCTCCTCAAGCAAAG
CTGCTAAATCCGACCAGGGCGATCAAGAACCTCGTGTAAGCAACAGCAACAGCAACCCGT
TGCCTAGCTACATGCAGTTCACAGAGTCCGCAAGAGCCA