Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d001898_T011
CDS Infomation

cds chromosome:B73_RefGen_v4:2:2553431:2559900:-1 gene:Zm00001d001898 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ATGTCACTGAAACTTCCAATTCCGCAAGGGCTTTCCTTCTTAAGAAGTGTTGGATGGTTT
GAGGACCGGAAGGTTGATTCAGCAGCCAAACAGCAGTTATCCCCAACGTTGAAACTCCAG
ACAGATAAGGAGACGTACAGACCTGGTGATTCAGTCACTGTGACTATCGAAATCTGTAGC
CCAGCTAGTTTGAAGGATGATGTTGGGCAGGCAGTGTCAGGCGAGGATGCCCCCTCGCTG
TTGTTAGATGTGCTATCATTTGAACTTAAAGGGATTGAGAAGCTGGATACTCAATGGTTC
TCTGTTCCTAAGCCCTTACCAGGGTCTAAACAAAGGCGAGGTGAACATATGTTTCTGGAT
TGTTCGGCACCATCACTGGTCTCTAAAGTAATAATTGGTGCAGGGCGAACAAAAACGTAC
ATTGCACGTGTGGAGCTCCCAAAGACTTTGCCGCCATCTTATAGGGGCATCAGTATCCGC
TATTTTTATTATGTTAGGACCACATTATTTGGAAGGCCAGTTATGTTGGGTAATGGAGAC
CAATATAAAGGTCTTGTGAATAATGCAATTCATCTGGAAGCTAGAGTCCCATTGCAGATA
CGTGTTTCCCAGAAAAGCAGCAGCCTACTAAATGAAGAAGGGAATCTGCCTTTTTCGGTG
GATCAACCGAGCATATTTTGGAAGGGAAAAGATGAAGATTCAGAATGGAGCAAAGCAAAT
GATAATGTTGATCTAGAAGAAGGATATGATAGTTCTAAAGATGAAGTTTCATCTGTTTCC
TCATACAATCCTTCAAAAGCACATCCTGAATTCTCCCTAAGGAGCTCGTTGTCAATGCAT
TCTCTGTCATCACGGCTCTCCACGAGTGAGCTATTTTACAATCAAGTGGAACGACCTAAT
TTCCCATCATACAATCCAATTCCTCGATTGTCAGTGTCAGAGATTTCAGATGATCATGAC
GGAGGTTTAGTGGCATCTCAAAGGAAACTAAACATTTTGCTACCAGACCATACATCGAAT
GGGCAAAGGGTTTCTCCAGATTCTGATCACTCAAAAGATGATGCTGGACTCCCCCTTACG
CCAAAAAATGTTGATCCAGCTGGATCTGAAGGCTTTACGACAGGAAGATCTTATAATATA
AGAATTGATGACCAAGTTTTGCTTCGGTTTTCACCAAAGAATTCTGACTCAACCTATTAC
TTTGGTGATATGATTGGTGGAGCACTTACCTTCTTTCACGGAACTGGAAAACGGAGGTGC
CTCGAGGTATCTATAGCCCTGGAAACATCTGAAACAATTAATCCTCGCGCATTACATCCT
TCAAGAAGGGGCTCACCAACAATAACCAAGCTACACAGTGAACATCATGAGGTTGTTGCG
GATCTTCACCAGACAAGCTTTCTGTTTTCCATTCCCATTGATGGCCCTATGTCTTTTTGT
ACCTCAAAGGTCACTGTACAGTGGTCTCTTCGATTTGAGTTCTTCACAACTCCGGAAGGA
ACAGACCCAGCTAGGTACGAGCACCCACTCCTTGTTGATAAAAGAGAGAAGGGTGAATGG
GTGCTCCCGGTAACTGTTTACACACCTCCATTGCGCAGACGAGCTACTCATGAGAGGAAT
GGTAGATCTGTCTCACCTGGAAATATCTTCAACTCTTGA

Peptide Sequence

PEP ID

Zm00001d001898_P011
PEP Infomation

pep chromosome:B73_RefGen_v4:2:2553431:2559900:-1 gene:Zm00001d001898 transcript:Zm00001d001898_T011 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

MSLKLPIPQGLSFLRSVGWFEDRKVDSAAKQQLSPTLKLQTDKETYRPGDSVTVTIEICS
PASLKDDVGQAVSGEDAPSLLLDVLSFELKGIEKLDTQWFSVPKPLPGSKQRRGEHMFLD
CSAPSLVSKVIIGAGRTKTYIARVELPKTLPPSYRGISIRYFYYVRTTLFGRPVMLGNGD
QYKGLVNNAIHLEARVPLQIRVSQKSSSLLNEEGNLPFSVDQPSIFWKGKDEDSEWSKAN
DNVDLEEGYDSSKDEVSSVSSYNPSKAHPEFSLRSSLSMHSLSSRLSTSELFYNQVERPN
FPSYNPIPRLSVSEISDDHDGGLVASQRKLNILLPDHTSNGQRVSPDSDHSKDDAGLPLT
PKNVDPAGSEGFTTGRSYNIRIDDQVLLRFSPKNSDSTYYFGDMIGGALTFFHGTGKRRC
LEVSIALETSETINPRALHPSRRGSPTITKLHSEHHEVVADLHQTSFLFSIPIDGPMSFC
TSKVTVQWSLRFEFFTTPEGTDPARYEHPLLVDKREKGEWVLPVTVYTPPLRRRATHERN
GRSVSPGNIFNS

Transcript Sequence

Transcript ID

Zm00001d001898_T011
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:2553431:2559900:-1 gene:Zm00001d001898 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

GAGAGCGAGCGCACGGCGGCTGGCACTGAGAAGAGAGGCGGATGCTGGTGGCGGTTAGGA
TTGCTTCGCAGTGTGCACATATATACATATCCGCTTCGTGGTAATTGGGCCTTTAATGGG
CCTTCCTCTTCATCCAGGCTGAGGCACTCGTCTCCCTCCTCGCTTGCGCTCTGTTTCGGT
GTTTCCTGTTTCGGTGTTTCCTGTCTCTGGTGGCGACGACTGGGCGGCCGACGCTGCCAC
CGCCCTACGCCAGGTGACCAGGTCTTTCGTATTCGGGATCTTCGCCGGCGTCGAGCACCC
GGCCATTGGCGGAAATTTGATGAGTTAGAGCTTATTACTGGTCTGATACTCCTATACGAT
GTCACTGAAACTTCCAATTCCGCAAGGGCTTTCCTTCTTAAGAAGTGTTGGATGGTTTGA
GGACCGGAAGGTTGATTCAGCAGCCAAACAGCAGTTATCCCCAACGTTGAAACTCCAGAC
AGATAAGGAGACGTACAGACCTGGTGATTCAGTCACTGTGACTATCGAAATCTGTAGCCC
AGCTAGTTTGAAGGATGATGTTGGGCAGGCAGTGTCAGGCGAGGATGCCCCCTCGCTGTT
GTTAGATGTGCTATCATTTGAACTTAAAGGGATTGAGAAGCTGGATACTCAATGGTTCTC
TGTTCCTAAGCCCTTACCAGGGTCTAAACAAAGGCGAGGTGAACATATGTTTCTGGATTG
TTCGGCACCATCACTGGTCTCTAAAGTAATAATTGGTGCAGGGCGAACAAAAACGTACAT
TGCACGTGTGGAGCTCCCAAAGACTTTGCCGCCATCTTATAGGGGCATCAGTATCCGCTA
TTTTTATTATGTTAGGACCACATTATTTGGAAGGCCAGTTATGTTGGGTAATGGAGACCA
ATATAAAGGTCTTGTGAATAATGCAATTCATCTGGAAGCTAGAGTCCCATTGCAGATACG
TGTTTCCCAGAAAAGCAGCAGCCTACTAAATGAAGAAGGGAATCTGCCTTTTTCGGTGGA
TCAACCGAGCATATTTTGGAAGGGAAAAGATGAAGATTCAGAATGGAGCAAAGCAAATGA
TAATGTTGATCTAGAAGAAGGATATGATAGTTCTAAAGATGAAGTTTCATCTGTTTCCTC
ATACAATCCTTCAAAAGCACATCCTGAATTCTCCCTAAGGAGCTCGTTGTCAATGCATTC
TCTGTCATCACGGCTCTCCACGAGTGAGCTATTTTACAATCAAGTGGAACGACCTAATTT
CCCATCATACAATCCAATTCCTCGATTGTCAGTGTCAGAGATTTCAGATGATCATGACGG
AGGTTTAGTGGCATCTCAAAGGAAACTAAACATTTTGCTACCAGACCATACATCGAATGG
GCAAAGGGTTTCTCCAGATTCTGATCACTCAAAAGATGATGCTGGACTCCCCCTTACGCC
AAAAAATGTTGATCCAGCTGGATCTGAAGGCTTTACGACAGGAAGATCTTATAATATAAG
AATTGATGACCAAGTTTTGCTTCGGTTTTCACCAAAGAATTCTGACTCAACCTATTACTT
TGGTGATATGATTGGTGGAGCACTTACCTTCTTTCACGGAACTGGAAAACGGAGGTGCCT
CGAGGTATCTATAGCCCTGGAAACATCTGAAACAATTAATCCTCGCGCATTACATCCTTC
AAGAAGGGGCTCACCAACAATAACCAAGCTACACAGTGAACATCATGAGGTTGTTGCGGA
TCTTCACCAGACAAGCTTTCTGTTTTCCATTCCCATTGATGGCCCTATGTCTTTTTGTAC
CTCAAAGGTCACTGTACAGTGGTCTCTTCGATTTGAGTTCTTCACAACTCCGGAAGGAAC
AGACCCAGCTAGGTACGAGCACCCACTCCTTGTTGATAAAAGAGAGAAGGGTGAATGGGT
GCTCCCGGTAACTGTTTACACACCTCCATTGCGCAGACGAGCTACTCATGAGAGGAATGG
TAGATCTGTCTCACCTGGAAATATCTTCAACTCTTGAAGTGCACTGTTGCCGAAGTATAG
TTACTTTCAGCTGGAAAGGATTTACAGACTATTCTGACTGGTACAATTGCATCAAAAGGA
TTTTCTCGCTGTAAATTGTTATAGGATTTGCAATGCGATGTCTATTTTTTTAATAGAGAA
CAAATGGAGTGAAATACTTGACTTGCACCAAATGGATTTATTGGACCATTTGTT