Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d001884_T012
CDS Infomation

cds chromosome:B73_RefGen_v4:2:2351462:2354670:1 gene:Zm00001d001884 gene_biotype:protein_coding transcript_biotype:protein_coding description:Trypsin family protein
Sequence

ATGCAGTCCTCAGGTATTTGGAAGGCGCATGCTGGTTCATCACAGTCAGAGGGTTCGGGT
CTGGATATGGAGAGGAACGGATGCAATCATAATTATTGTCCATCTCCTCTCCAACCAATT
GCCTCAGCTGGTCAGCACTCTGAAAGCAGCGCTGCATACTTTTCTTGGCCTACATCTACT
CTAATGCACGGGTCAGCTGAAGGCCGTGCTAATTACTTTGGGAACCTACAGAAGGGTGTA
CTACCAGGACATCTTGGTCGCTTGCCAAAGGGCCAGCAAGCTACCACCTTACTTGATTTA
ATGATTATAAGAGCATTCCACAGCAAGATCCTCCGCCGGTTTAGTCTTGGTACAGCAATA
GGCTTTAGAATCAGGAAAGGAACATTGACTGACACACCTGCCATCCTTGTGTTTGTTGCT
CGAAAGGTTCACAGGAAGTGGCTCAGCGCTACTCAATGTCTTCCAACTGCCCTTGAGGGA
CCTGGGGGTGTGTGGTGTGATGTTGATGTTGTTGAATTTTCTTATTATGGTGCACCAGCC
CCAACACCAAAGGAACAACTTTATGATGAGCTTGTTGATGGATTGCGTGGTAGCGACCCT
ATTGTAGGCTCAGGTTCACAGGTGGCTAGTCTTGAGACCTATGGGACTTTGGGTGCCATT
GTGAAGAGTCAAACTGGCAATAAACAAGTTGGGTTCCTTACAAACAGGCATGTTGCGGTT
GATCTGGATTATCCCAACCAGAAGATGTTCCATCCGCTACCTCCTAATCTTGGGCCTGGA
GTTTACCTAGGTGCCGTTGAGAGAGCAACATCATTTATAACAGATGATGTTTGGTACGGG
ATTTACGCAGGAACAAACCCAGAAACTTTTGTCCGAGCTGATGGTGCATTTATACCGTTT
GCTGATGACTTTGACATTACAAGTGTCAGCACATCGGTTAAAGGAGTTGGAGTCATTGGT
GATGTAAAGGCAATTGATTTGCAATCCTCAATTGGCAGTCTCATTGGGAGACAAGTTGTC
AAAGTTGGAAGAAGTTCTGGTCTGACAACAGGAACTGTTGTCGCATACGCACTTGAGTAC
AATGATGAGAAGGGAATATGCTTCTTCACTGACTTTCTTGTCGTTGGGGAGAACCAACAA
ACATTTGATCTTGAAGGGGACAGCGGAAGCCTCATAATCTTGACAGGACAAGACGGTGAG
AAGCCACAGCCTATAGGGATTATTTGGGGTGGTACAGCTAATCGGGGAAGGTTGAAACTT
AAAAGTGGCCAGGGTCCGGAGAACTGGACCAGTGGAGTTGACCTTGGCCGCCTTCTTGAT
CTCTTGGAGCTAGATCTGATCACAACAAGTGAAGGGCTACAAGCTGCCTTGGAAGAACAA
AGGATTACTCTAGCCGCCGCTGCTGCTGCGGCAACTAATTCAACTGCCACAGAATCGTCA
CCTGTTGCTGGCCCTCAAGAGAATGATAAAATCGACAAAATCTATGAACCTCTCGGCATC
AACATCATTCCTCGGGACAGTTCTTCCATATCAACAGACCAACCCAACGAGAATGTGGAA
GAGCTAAACCTGATGTCTCCGATGCGCAACGGTCAAGAAGGCAACGGTGACTTGAATAAC
TTGATGGACTTGGAACTGGAAAATTCACCTGATGGTATTTGTATTGCCCTGAACCTGGGA
GAGCGGGAGCCAAAAAGACTCCGCTCAGATTTTGATTCGACCCTGGACATGGACTTGCAG
AAATGA

Peptide Sequence

PEP ID

Zm00001d001884_P012
PEP Infomation

pep chromosome:B73_RefGen_v4:2:2351462:2354670:1 gene:Zm00001d001884 transcript:Zm00001d001884_T012 gene_biotype:protein_coding transcript_biotype:protein_coding description:Trypsin family protein
Sequence

MQSSGIWKAHAGSSQSEGSGLDMERNGCNHNYCPSPLQPIASAGQHSESSAAYFSWPTST
LMHGSAEGRANYFGNLQKGVLPGHLGRLPKGQQATTLLDLMIIRAFHSKILRRFSLGTAI
GFRIRKGTLTDTPAILVFVARKVHRKWLSATQCLPTALEGPGGVWCDVDVVEFSYYGAPA
PTPKEQLYDELVDGLRGSDPIVGSGSQVASLETYGTLGAIVKSQTGNKQVGFLTNRHVAV
DLDYPNQKMFHPLPPNLGPGVYLGAVERATSFITDDVWYGIYAGTNPETFVRADGAFIPF
ADDFDITSVSTSVKGVGVIGDVKAIDLQSSIGSLIGRQVVKVGRSSGLTTGTVVAYALEY
NDEKGICFFTDFLVVGENQQTFDLEGDSGSLIILTGQDGEKPQPIGIIWGGTANRGRLKL
KSGQGPENWTSGVDLGRLLDLLELDLITTSEGLQAALEEQRITLAAAAAAATNSTATESS
PVAGPQENDKIDKIYEPLGINIIPRDSSSISTDQPNENVEELNLMSPMRNGQEGNGDLNN
LMDLELENSPDGICIALNLGEREPKRLRSDFDSTLDMDLQK

Transcript Sequence

Transcript ID

Zm00001d001884_T012
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:2351462:2354670:1 gene:Zm00001d001884 gene_biotype:protein_coding transcript_biotype:protein_coding description:Trypsin family protein
Sequence

GGTTCTGATCTCCCATGCCACAGTTTATAACGTTGAAGGATTCAAAAATCTACAGAACTA
GATGATACTTGCATAATGCAGTCCTCAGGTATTTGGAAGGCGCATGCTGGTTCATCACAG
TCAGAGGGTTCGGGTCTGGATATGGAGAGGAACGGATGCAATCATAATTATTGTCCATCT
CCTCTCCAACCAATTGCCTCAGCTGGTCAGCACTCTGAAAGCAGCGCTGCATACTTTTCT
TGGCCTACATCTACTCTAATGCACGGGTCAGCTGAAGGCCGTGCTAATTACTTTGGGAAC
CTACAGAAGGGTGTACTACCAGGACATCTTGGTCGCTTGCCAAAGGGCCAGCAAGCTACC
ACCTTACTTGATTTAATGATTATAAGAGCATTCCACAGCAAGATCCTCCGCCGGTTTAGT
CTTGGTACAGCAATAGGCTTTAGAATCAGGAAAGGAACATTGACTGACACACCTGCCATC
CTTGTGTTTGTTGCTCGAAAGGTTCACAGGAAGTGGCTCAGCGCTACTCAATGTCTTCCA
ACTGCCCTTGAGGGACCTGGGGGTGTGTGGTGTGATGTTGATGTTGTTGAATTTTCTTAT
TATGGTGCACCAGCCCCAACACCAAAGGAACAACTTTATGATGAGCTTGTTGATGGATTG
CGTGGTAGCGACCCTATTGTAGGCTCAGGTTCACAGGTGGCTAGTCTTGAGACCTATGGG
ACTTTGGGTGCCATTGTGAAGAGTCAAACTGGCAATAAACAAGTTGGGTTCCTTACAAAC
AGGCATGTTGCGGTTGATCTGGATTATCCCAACCAGAAGATGTTCCATCCGCTACCTCCT
AATCTTGGGCCTGGAGTTTACCTAGGTGCCGTTGAGAGAGCAACATCATTTATAACAGAT
GATGTTTGGTACGGGATTTACGCAGGAACAAACCCAGAAACTTTTGTCCGAGCTGATGGT
GCATTTATACCGTTTGCTGATGACTTTGACATTACAAGTGTCAGCACATCGGTTAAAGGA
GTTGGAGTCATTGGTGATGTAAAGGCAATTGATTTGCAATCCTCAATTGGCAGTCTCATT
GGGAGACAAGTTGTCAAAGTTGGAAGAAGTTCTGGTCTGACAACAGGAACTGTTGTCGCA
TACGCACTTGAGTACAATGATGAGAAGGGAATATGCTTCTTCACTGACTTTCTTGTCGTT
GGGGAGAACCAACAAACATTTGATCTTGAAGGGGACAGCGGAAGCCTCATAATCTTGACA
GGACAAGACGGTGAGAAGCCACAGCCTATAGGGATTATTTGGGGTGGTACAGCTAATCGG
GGAAGGTTGAAACTTAAAAGTGGCCAGGGTCCGGAGAACTGGACCAGTGGAGTTGACCTT
GGCCGCCTTCTTGATCTCTTGGAGCTAGATCTGATCACAACAAGTGAAGGGCTACAAGCT
GCCTTGGAAGAACAAAGGATTACTCTAGCCGCCGCTGCTGCTGCGGCAACTAATTCAACT
GCCACAGAATCGTCACCTGTTGCTGGCCCTCAAGAGAATGATAAAATCGACAAAATCTAT
GAACCTCTCGGCATCAACATCATTCCTCGGGACAGTTCTTCCATATCAACAGACCAACCC
AACGAGAATGTGGAAGAGCTAAACCTGATGTCTCCGATGCGCAACGGTCAAGAAGGCAAC
GGTGACTTGAATAACTTGATGGACTTGGAACTGGAAAATTCACCTGATGGTATTTGTATT
GCCCTGAACCTGGGAGAGCGGGAGCCAAAAAGACTCCGCTCAGATTTTGATTCGACCCTG
GACATGGACTTGCAGAAATGAGGCTGTTATGCTGCAGACTTGTTGCAGGAGGCTCTGCAC
TATTCAGCTTTTGTGTTGATCATTGAAGGTATGGCCATAAAGGAAATAATATGTTTCTGG
ACGACTGGACCTGTTGTCCTGCTTGGAGCCGGTCTGGGTTAAGCTGTGAAGCTCCTGCTG
CAGTTTTGCGTCTAGTGTCAAGTGCTCTAGTATATCTAGTGTTGCGTAAGATGTCGGCAC
CTCAATTTGACAGAGGCGCCATACTTCTTGCCCATGTAATGTTGTCATTTGTTGTATGCT
CGTGTATATGTACTACATGAAGCATTGTAAAATTGAGCAACAGCAACCGGAGCTCGAGAA
TCTTAGGCGCATGCGCAACCATCCACCAACCCCGTACCTGATGAATTGACAATAAAGCTG
GATATTTTAGGTGT