Plant GARDEN
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d001859_T004
CDS Infomation

cds chromosome:B73_RefGen_v4:2:2037427:2043847:1 gene:Zm00001d001859 gene_biotype:protein_coding transcript_biotype:protein_coding description:Vacuolar protein sorting-associated protein 41 homolog
Sequence

ATGTCCACCGCGCCCGCGCGGCGCGCCCGCCCGCCGCTGCCGCTGCAGAACGGCGCGGAG
GGCGACGACGAGCGCGAGGAGGAGGTTGATGAGGAGGAAGTGGGCGATGACGAAGCGGAG
GAGGAGGAGGACGACGACGACGAGGAGGAGCCGCGGCTCAAGTACCAGCGGCTAGGCGGG
AGCGTGCCGGCGATCCTCTCCACCGACGCCGCGGCCGCCATCGCCGTCGCCGACCGCATG
GTCGCGCTCGGCACTCACAACGGCACGCTCCACATCCTCGACTTCCAGGGCAACCAGGTG
AAAGAAATTGCTGCGCACACAGCAACTATCAACGACATAAGCTTTGACGCAGACGGTGAA
TATATAGGCAGCTGCTCGGATGATGGCACAGTGGCAATAAACAGCCTCTTCACCGATGAA
AAGCTAAAGTTTGAGTACCATCGCCCCATGAAGGCAATTGCTCTAGACCCTAATTATGCC
CGGAACTATAGAAGATTTGCTACTGGTGGTTTAGCAGGCCAAGTACTTGTGCTGACAAAG
AAGTCTTGGGGAGGTTACCATAAGAAGGTTTTGCGTGATGGTGAAGGGCCAATCCATTCG
ATGAAGTGGAGGGCGGATCTTCTTGCTTGGGCTAATGATGCAGGGGTCAAAGTGCATGAT
ATGAGAACAGACAAAGGGATCGCATTCATAGAGAGACCAAAAGGCATTCATCGACCAGAG
TTCTTGCTTCCCCACCTAGTCTGGCAGGATGATACAGTCTTAGTTGTTGGATGGGGAACA
AGTGTCAAGATTGCAGCGATCCGAACAGATCTATCTCAGGGACTCAATGGCCTACAAAGA
ACTATCACCACAGCTAGTTCTGAGAAGTATGTGGACATTGTGGGCTCATTCCAAACAGGC
TATCACATATCTGGGGTTGCTCCATTTGGTGACCTTTTAGTCGTACTTGCCTATATTCCT
GATGAGGATGAAAAAGAGAAAACATTTAGTACTTCTGTTACTTCACGACAGGGAACTGCA
CAGCGTCCAGAAATACATCTTGTATCATGGAAAAATGATGAGCTTACTACAGATGCTCTG
CCTATTCATGGTTATGAGCATTACAAGGCAAAGGACTATGCTCTTGCACATGCACCTTTC
TCAGGAAGTAGCAATGCAGGTGGACAGTGGGCTGCTGGTGATGAACCTTTGTATTACATT
GTGTCTCCTAAGGACATAGTCGTTGCAAAGCCAAGTGTGCACCTTCTGATTAGAGATGCT
GAAGATCATATTGCTTGGCTTCTTCAACATGGTTGCCATGAAAAAGCATTGGCTGCAGTT
GAGGCAGGGCAAGGACGCACTGAGCTTCTTGATGAGGTGGGCTCAAGATACCTTGATCAC
TTGATAATTGAAAGAAAATATGCTGAAGCTGCTCAACGCTGCCCAAAGTTGTTGCGAGGA
TCCCCTTCAGCATGGGAGAGATGGGTCTTCCACTTTGCTCATCTCCGCCAACTTCCTGTT
TTGGTCCCTTATATTCCTACAGAAAATCCTCAGCTGAGTGATACTGCATATGAGGTTGCC
CTTGTTGCTCTAACTACCAATCCTTCTTTCCATGAACTTCTCTTGACTACTATAAAAAAT
TGGCCACCGACATTATACTCAGCCTCACCGGTCATATCTGCCATTGAGCCACAGCTAAAC
TCCTCATCGATGGCTGATTCATTGAAAGAGTCATTAGCTGAATTGTATGTGATCAATGGT
CAATACGAAAAGGCACTTTCTCTTTATGCTGAACTCCTGAAGCCAGAAGTATTCGAGTTT
ATTGAGAAATACAACTTGCATGATGCCATTCATGATAAGATTGTCAATCTTATGATAGTG
GACAATAAAAGAACAGTTCACCTACTGATCCAACATCGTGATATCATTCCCCCATATGAA
GTTGTGGAGCAGCTGTTGCATACCAGTAAAAAATGTGACAAGAGATATTTGTTACACCTG
TATTTGCATGCTTTATTTGAGATAGATATACACGCTGGAAAGGATTTTCATGATATGCAG
GTGGAGCTTTATGCTGACTACGAGACAAGGATGCTACTACCCTTCCTTCGAACCAGTCAG
CATTACAGGCTTGACAAGGCATATGAAATCTTTGCACAAAAAGAACTTGTAAGGGAGCAA
GTTTTTGTCCTTGGTCGAATGGGCAATGCTAAGGAAGCTCTGTCGACAATTATAAACAAA
CTGGAAGACATGCAGGAGGCTGTTGAATTTGTTACGGAACAGCATGATGATGAACTGTGG
GAGGAACTGATTAGACAATGCCTCCAGAAGCCTGAAATGGTAGGGAATCTATTGGAACAT
ACAGTTGGCAATCTTGATCCTCTGTACATTGTCAGTTTGGTTCCTGATGGCTTAGAAATA
CCTCGGTTGCGGGATCGTCTTGTGAAAATTGTGACGGATTACCGGACAGAAACTTCATTG
CGAAATGGATGCAACGATATACTTAAGGCTGACTGTGTTAACCTTTTGGTTAAATACTAC
CACGAGGCTCGGCGTGGGGTATACATGGTAAGCATGGACGAGGAGGTACACGGAAACAGA
GCTGACGATGGATCATCGCGGGGACACGAGAGATCATCTAGCGTCCGGGCTCTAGATATC
AAGTCCAGAACAAGATGTGGTGCCCGGTGTTGTTTGTGCTTCGATCCTTTGCCTATCCAG
GACATATCTGTCATCGTGTTCTACTGCTGCCATGCGTATCATCTGTCTTGCCTTGAAGGT
GGCTTAGACTCGATGAGATCAAACAGTGGTCAGGATAGTGACGGAGGCATGGACGATGAG
GATGGTTCCCCATCAGGCCAGTCTCGCATGCGCTGTGTCTTGTGCACTACTGCTGCTTCA
TAA

Peptide Sequence

PEP ID

Zm00001d001859_P004
PEP Infomation

pep chromosome:B73_RefGen_v4:2:2037427:2043847:1 gene:Zm00001d001859 transcript:Zm00001d001859_T004 gene_biotype:protein_coding transcript_biotype:protein_coding description:Vacuolar protein sorting-associated protein 41 homolog
Sequence

MSTAPARRARPPLPLQNGAEGDDEREEEVDEEEVGDDEAEEEEDDDDEEEPRLKYQRLGG
SVPAILSTDAAAAIAVADRMVALGTHNGTLHILDFQGNQVKEIAAHTATINDISFDADGE
YIGSCSDDGTVAINSLFTDEKLKFEYHRPMKAIALDPNYARNYRRFATGGLAGQVLVLTK
KSWGGYHKKVLRDGEGPIHSMKWRADLLAWANDAGVKVHDMRTDKGIAFIERPKGIHRPE
FLLPHLVWQDDTVLVVGWGTSVKIAAIRTDLSQGLNGLQRTITTASSEKYVDIVGSFQTG
YHISGVAPFGDLLVVLAYIPDEDEKEKTFSTSVTSRQGTAQRPEIHLVSWKNDELTTDAL
PIHGYEHYKAKDYALAHAPFSGSSNAGGQWAAGDEPLYYIVSPKDIVVAKPSVHLLIRDA
EDHIAWLLQHGCHEKALAAVEAGQGRTELLDEVGSRYLDHLIIERKYAEAAQRCPKLLRG
SPSAWERWVFHFAHLRQLPVLVPYIPTENPQLSDTAYEVALVALTTNPSFHELLLTTIKN
WPPTLYSASPVISAIEPQLNSSSMADSLKESLAELYVINGQYEKALSLYAELLKPEVFEF
IEKYNLHDAIHDKIVNLMIVDNKRTVHLLIQHRDIIPPYEVVEQLLHTSKKCDKRYLLHL
YLHALFEIDIHAGKDFHDMQVELYADYETRMLLPFLRTSQHYRLDKAYEIFAQKELVREQ
VFVLGRMGNAKEALSTIINKLEDMQEAVEFVTEQHDDELWEELIRQCLQKPEMVGNLLEH
TVGNLDPLYIVSLVPDGLEIPRLRDRLVKIVTDYRTETSLRNGCNDILKADCVNLLVKYY
HEARRGVYMVSMDEEVHGNRADDGSSRGHERSSSVRALDIKSRTRCGARCCLCFDPLPIQ
DISVIVFYCCHAYHLSCLEGGLDSMRSNSGQDSDGGMDDEDGSPSGQSRMRCVLCTTAAS

Transcript Sequence

Transcript ID

Zm00001d001859_T004
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:2037427:2043847:1 gene:Zm00001d001859 gene_biotype:protein_coding transcript_biotype:protein_coding description:Vacuolar protein sorting-associated protein 41 homolog
Sequence

GAGCACCGAGGCAAAGGCAGTTCTTACACGCGGGCCCTCGGCTTCACCGGAAATCGCCTC
GGGACGGGAGATCTCGCGGGCCGGCCGGCGGCGAGAGGATGTCCACCGCGCCCGCGCGGC
GCGCCCGCCCGCCGCTGCCGCTGCAGAACGGCGCGGAGGGCGACGACGAGCGCGAGGAGG
AGGTTGATGAGGAGGAAGTGGGCGATGACGAAGCGGAGGAGGAGGAGGACGACGACGACG
AGGAGGAGCCGCGGCTCAAGTACCAGCGGCTAGGCGGGAGCGTGCCGGCGATCCTCTCCA
CCGACGCCGCGGCCGCCATCGCCGTCGCCGACCGCATGGTCGCGCTCGGCACTCACAACG
GCACGCTCCACATCCTCGACTTCCAGGGCAACCAGGTGAAAGAAATTGCTGCGCACACAG
CAACTATCAACGACATAAGCTTTGACGCAGACGGTGAATATATAGGCAGCTGCTCGGATG
ATGGCACAGTGGCAATAAACAGCCTCTTCACCGATGAAAAGCTAAAGTTTGAGTACCATC
GCCCCATGAAGGCAATTGCTCTAGACCCTAATTATGCCCGGAACTATAGAAGATTTGCTA
CTGGTGGTTTAGCAGGCCAAGTACTTGTGCTGACAAAGAAGTCTTGGGGAGGTTACCATA
AGAAGGTTTTGCGTGATGGTGAAGGGCCAATCCATTCGATGAAGTGGAGGGCGGATCTTC
TTGCTTGGGCTAATGATGCAGGGGTCAAAGTGCATGATATGAGAACAGACAAAGGGATCG
CATTCATAGAGAGACCAAAAGGCATTCATCGACCAGAGTTCTTGCTTCCCCACCTAGTCT
GGCAGGATGATACAGTCTTAGTTGTTGGATGGGGAACAAGTGTCAAGATTGCAGCGATCC
GAACAGATCTATCTCAGGGACTCAATGGCCTACAAAGAACTATCACCACAGCTAGTTCTG
AGAAGTATGTGGACATTGTGGGCTCATTCCAAACAGGCTATCACATATCTGGGGTTGCTC
CATTTGGTGACCTTTTAGTCGTACTTGCCTATATTCCTGATGAGGATGAAAAAGAGAAAA
CATTTAGTACTTCTGTTACTTCACGACAGGGAACTGCACAGCGTCCAGAAATACATCTTG
TATCATGGAAAAATGATGAGCTTACTACAGATGCTCTGCCTATTCATGGTTATGAGCATT
ACAAGGCAAAGGACTATGCTCTTGCACATGCACCTTTCTCAGGAAGTAGCAATGCAGGTG
GACAGTGGGCTGCTGGTGATGAACCTTTGTATTACATTGTGTCTCCTAAGGACATAGTCG
TTGCAAAGCCAAGTGTGCACCTTCTGATTAGAGATGCTGAAGATCATATTGCTTGGCTTC
TTCAACATGGTTGCCATGAAAAAGCATTGGCTGCAGTTGAGGCAGGGCAAGGACGCACTG
AGCTTCTTGATGAGGTGGGCTCAAGATACCTTGATCACTTGATAATTGAAAGAAAATATG
CTGAAGCTGCTCAACGCTGCCCAAAGTTGTTGCGAGGATCCCCTTCAGCATGGGAGAGAT
GGGTCTTCCACTTTGCTCATCTCCGCCAACTTCCTGTTTTGGTCCCTTATATTCCTACAG
AAAATCCTCAGCTGAGTGATACTGCATATGAGGTTGCCCTTGTTGCTCTAACTACCAATC
CTTCTTTCCATGAACTTCTCTTGACTACTATAAAAAATTGGCCACCGACATTATACTCAG
CCTCACCGGTCATATCTGCCATTGAGCCACAGCTAAACTCCTCATCGATGGCTGATTCAT
TGAAAGAGTCATTAGCTGAATTGTATGTGATCAATGGTCAATACGAAAAGGCACTTTCTC
TTTATGCTGAACTCCTGAAGCCAGAAGTATTCGAGTTTATTGAGAAATACAACTTGCATG
ATGCCATTCATGATAAGATTGTCAATCTTATGATAGTGGACAATAAAAGAACAGTTCACC
TACTGATCCAACATCGTGATATCATTCCCCCATATGAAGTTGTGGAGCAGCTGTTGCATA
CCAGTAAAAAATGTGACAAGAGATATTTGTTACACCTGTATTTGCATGCTTTATTTGAGA
TAGATATACACGCTGGAAAGGATTTTCATGATATGCAGGTGGAGCTTTATGCTGACTACG
AGACAAGGATGCTACTACCCTTCCTTCGAACCAGTCAGCATTACAGGCTTGACAAGGCAT
ATGAAATCTTTGCACAAAAAGAACTTGTAAGGGAGCAAGTTTTTGTCCTTGGTCGAATGG
GCAATGCTAAGGAAGCTCTGTCGACAATTATAAACAAACTGGAAGACATGCAGGAGGCTG
TTGAATTTGTTACGGAACAGCATGATGATGAACTGTGGGAGGAACTGATTAGACAATGCC
TCCAGAAGCCTGAAATGGTAGGGAATCTATTGGAACATACAGTTGGCAATCTTGATCCTC
TGTACATTGTCAGTTTGGTTCCTGATGGCTTAGAAATACCTCGGTTGCGGGATCGTCTTG
TGAAAATTGTGACGGATTACCGGACAGAAACTTCATTGCGAAATGGATGCAACGATATAC
TTAAGGCTGACTGTGTTAACCTTTTGGTTAAATACTACCACGAGGCTCGGCGTGGGGTAT
ACATGGTAAGCATGGACGAGGAGGTACACGGAAACAGAGCTGACGATGGATCATCGCGGG
GACACGAGAGATCATCTAGCGTCCGGGCTCTAGATATCAAGTCCAGAACAAGATGTGGTG
CCCGGTGTTGTTTGTGCTTCGATCCTTTGCCTATCCAGGACATATCTGTCATCGTGTTCT
ACTGCTGCCATGCGTATCATCTGTCTTGCCTTGAAGGTGGCTTAGACTCGATGAGATCAA
ACAGTGGTCAGGATAGTGACGGAGGCATGGACGATGAGGATGGTTCCCCATCAGGCCAGT
CTCGCATGCGCTGTGTCTTGTGCACTACTGCTGCTTCATAATTTTATACCGTGTTGGGTA
GTACACACTACCTTGTGTTGTGTTGTAAGTTTTGAGCCATGTAATTATTGTGTTCTTTTC
GCGTGTTACACATAACACATGCTTACAATAGCGTAATTCTTTTGAGGGAGGCCATGTCCT
CGGCAAGGAGAGTTCTGTGTAAATTTGATGAACCAGCATGAGCAAAGCTGTGCGGCATTT
CCATCTTTTTTTAATGCCACGTTTGCCAGATAATCAAAAGTTTATTGACATTAC