Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d001845_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:2:1718904:1720502:1 gene:Zm00001d001845 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ATGCCAGCCGCAGCCACATCAGCCGCGGTGCGCGCGGCCATGCGCAAGCTCGGGGGTCTC
CTCCCCCGCGCGCATCGTCCGCACTCCACCACGACGGGCCCAGACGCCGTCGCGCCACCG
TCGTCGCACACCCTCCACGACTTCAACCGCCTCCTGGCCGCGCTCGCGCGGGACGGCGAT
GGCGACGCGGCGCTCCGCGTGCTCCGCCGTATGCGCCTATCGTCGCCCGCGTGCGCGCCC
ACCGCCGCCTCCTACACCTCCGCCATGTCGGCGCTCGCCAAGGCCGGCCGCCCCGCTGAC
GCCGCGTCCCTCTTCGACGACATGCTCGCCAACGGCGTCGCCCCCGACCGCGCCGCCTTC
TCCCTCCTCCTGCACGTCTACTCCTCCCACCTCCACCTTCCCGCCGCCGCGCACTCCGTG
CTCCTCTGGATGACCGGGCTCGGCCTCCCGCCGACCCCCATCGACTACACTGATCTCATC
TTCTCCTTCTGCCGCGCCGGCCGCCTCCACAACGCCTTCCAGCTGCTCGACGAAATGCGC
GCTCTCAATTACCCGCTGACACCACATGCATTCGCGCCAATCCTCAAGGCAGTCTGCGAC
AATGCCGACATCCAGGCAGCTGACGCGCTCATAAGCTCCATGCGTTCCTCTGGTTGCCTC
CCCGATGTCGTCGTCTACAATATATACATCCATGGGTTGTGTAAGATCGGGGATTTTGAC
GCTGTGGAGAGAGTTATTTATGAGAGTGCCCGTAATGGGTGGGAACCAGATGCAGTCACA
TACAGCACCTACATTGTTGGGCTTTGCTGCTCTGGACACATTGAGGAAGCATTTCGGCAG
CTGGAAATTGTGGTAGCAAAGGGACTGCAACTGACAGCAGTTGGTTTGAACATACTGTTG
GACCATGTTGCCCAGAATCTTGATATGTGGGTAGGCAAGGAGGTCCTGGAGCGGTGCCAA
GAGCTGGGCTTTGTGGTCGACGTCGTGACATACAACACAGTCATGGATCATTTCTGCAAG
AAAGGAAAGTGGCTGCGCGTCCTAAAGCTGTTCACGGATCTGCTCAAGAAACCAATAGCA
CCCAATGTGCAGACATACAACATTTTGATTTCATGCCTATGCCGAGCTGGCAAGTTTCAC
TTTGCCAAATATGTGTTCAGCAGCAAGGGGTTCGTGGCAGACACTGTGACTTGTAACATT
CTGATCCATGAGTTCTATGAGGCCGGAAAGGAAGGTGAGCTTGGTTTTCTGTTCGCTGAT
GTGAATGCTGGGAAGATTGCCCCAGACACAATCACATACAATACGTTGGTTGACTGTCTC
TTTAGGTCTGGGAGGAGGTCACAGGCTGCCAATCTTGTTAGGCATATCGATGGTGGCTAC
CCTACAGAGCCCGTTGCGCATCTGACGTATTGGTTGGTTAGGAGTGGAAATGTACGGGAG
GCATTGAGGCTGTTTGATGATATCCAAATAAAGGGACTGGTTTTAGATTGTAGGATTTTT
GCTAATGTGATCAAGGCATTCTGCAGAAAGGGTCCAACAGAATGCTCAGAGATTTCACAG
TTGTGCTTTGTATTGGATAGGATGCTTGGAATTGGGTAA

Peptide Sequence

PEP ID

Zm00001d001845_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:2:1718904:1720502:1 gene:Zm00001d001845 transcript:Zm00001d001845_T001 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

MPAAATSAAVRAAMRKLGGLLPRAHRPHSTTTGPDAVAPPSSHTLHDFNRLLAALARDGD
GDAALRVLRRMRLSSPACAPTAASYTSAMSALAKAGRPADAASLFDDMLANGVAPDRAAF
SLLLHVYSSHLHLPAAAHSVLLWMTGLGLPPTPIDYTDLIFSFCRAGRLHNAFQLLDEMR
ALNYPLTPHAFAPILKAVCDNADIQAADALISSMRSSGCLPDVVVYNIYIHGLCKIGDFD
AVERVIYESARNGWEPDAVTYSTYIVGLCCSGHIEEAFRQLEIVVAKGLQLTAVGLNILL
DHVAQNLDMWVGKEVLERCQELGFVVDVVTYNTVMDHFCKKGKWLRVLKLFTDLLKKPIA
PNVQTYNILISCLCRAGKFHFAKYVFSSKGFVADTVTCNILIHEFYEAGKEGELGFLFAD
VNAGKIAPDTITYNTLVDCLFRSGRRSQAANLVRHIDGGYPTEPVAHLTYWLVRSGNVRE
ALRLFDDIQIKGLVLDCRIFANVIKAFCRKGPTECSEISQLCFVLDRMLGIG

Transcript Sequence

Transcript ID

Zm00001d001845_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:1718904:1720502:1 gene:Zm00001d001845 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ATGCCAGCCGCAGCCACATCAGCCGCGGTGCGCGCGGCCATGCGCAAGCTCGGGGGTCTC
CTCCCCCGCGCGCATCGTCCGCACTCCACCACGACGGGCCCAGACGCCGTCGCGCCACCG
TCGTCGCACACCCTCCACGACTTCAACCGCCTCCTGGCCGCGCTCGCGCGGGACGGCGAT
GGCGACGCGGCGCTCCGCGTGCTCCGCCGTATGCGCCTATCGTCGCCCGCGTGCGCGCCC
ACCGCCGCCTCCTACACCTCCGCCATGTCGGCGCTCGCCAAGGCCGGCCGCCCCGCTGAC
GCCGCGTCCCTCTTCGACGACATGCTCGCCAACGGCGTCGCCCCCGACCGCGCCGCCTTC
TCCCTCCTCCTGCACGTCTACTCCTCCCACCTCCACCTTCCCGCCGCCGCGCACTCCGTG
CTCCTCTGGATGACCGGGCTCGGCCTCCCGCCGACCCCCATCGACTACACTGATCTCATC
TTCTCCTTCTGCCGCGCCGGCCGCCTCCACAACGCCTTCCAGCTGCTCGACGAAATGCGC
GCTCTCAATTACCCGCTGACACCACATGCATTCGCGCCAATCCTCAAGGCAGTCTGCGAC
AATGCCGACATCCAGGCAGCTGACGCGCTCATAAGCTCCATGCGTTCCTCTGGTTGCCTC
CCCGATGTCGTCGTCTACAATATATACATCCATGGGTTGTGTAAGATCGGGGATTTTGAC
GCTGTGGAGAGAGTTATTTATGAGAGTGCCCGTAATGGGTGGGAACCAGATGCAGTCACA
TACAGCACCTACATTGTTGGGCTTTGCTGCTCTGGACACATTGAGGAAGCATTTCGGCAG
CTGGAAATTGTGGTAGCAAAGGGACTGCAACTGACAGCAGTTGGTTTGAACATACTGTTG
GACCATGTTGCCCAGAATCTTGATATGTGGGTAGGCAAGGAGGTCCTGGAGCGGTGCCAA
GAGCTGGGCTTTGTGGTCGACGTCGTGACATACAACACAGTCATGGATCATTTCTGCAAG
AAAGGAAAGTGGCTGCGCGTCCTAAAGCTGTTCACGGATCTGCTCAAGAAACCAATAGCA
CCCAATGTGCAGACATACAACATTTTGATTTCATGCCTATGCCGAGCTGGCAAGTTTCAC
TTTGCCAAATATGTGTTCAGCAGCAAGGGGTTCGTGGCAGACACTGTGACTTGTAACATT
CTGATCCATGAGTTCTATGAGGCCGGAAAGGAAGGTGAGCTTGGTTTTCTGTTCGCTGAT
GTGAATGCTGGGAAGATTGCCCCAGACACAATCACATACAATACGTTGGTTGACTGTCTC
TTTAGGTCTGGGAGGAGGTCACAGGCTGCCAATCTTGTTAGGCATATCGATGGTGGCTAC
CCTACAGAGCCCGTTGCGCATCTGACGTATTGGTTGGTTAGGAGTGGAAATGTACGGGAG
GCATTGAGGCTGTTTGATGATATCCAAATAAAGGGACTGGTTTTAGATTGTAGGATTTTT
GCTAATGTGATCAAGGCATTCTGCAGAAAGGGTCCAACAGAATGCTCAGAGATTTCACAG
TTGTGCTTTGTATTGGATAGGATGCTTGGAATTGGGTAA