Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d000417_T001
CDS Infomation

cds contig:B73_RefGen_v4:B73V4_ctg121:20918:21979:-1 gene:Zm00001d000417 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:psbA description:Photosystem Q(B) protein

Sequence

ATGACTGCAATTTTAGAGAGACGCGAAAGTACAAGCCTGTGGGGTCGCTTCTGCAACTGG
ATAACTAGCACCGAAAACCGTCTTTACATTGGATGGTTCGGTGTTTTGATGATCCCTACC
TTATTGACCGCAACTTCCGTATTTATTATCGCCTTCATCGCTGCTCCTCCAGTAGATATT
GATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGT
GCTATTATTCCTACTTCTGCGGCGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCA
TCTGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTA
CTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGC
CCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATT
TACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTC
AACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTTCACATGTTA
GGTGTAGCTGGTGTATTCGGTGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACC
TCTAGTTTGATCAGGGAAACCACTGAAAATGAGTCTGCTAATGAGGGTTACAAATTTGGT
CAGGAAGAAGAGACTTATAATATTGTGGCTGCTCACGGTTATTTTGGTCGATTAATCTTC
CAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTA
GTAGGGATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCATTCAACCTAAATGGTTTC
AATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATC
ATCAACCGTGCTAATCTTGGTATGGAGGTAATGCACGAACGTAATGCTCACAACTTCCCT
CTAGACCTAGCTGCTCTTGAAGTTCCTTACCTTAATGGATAA

Peptide Sequence

PEP ID

Zm00001d000417_P001
PEP Infomation

pep contig:B73_RefGen_v4:B73V4_ctg121:20918:21979:-1 gene:Zm00001d000417 transcript:Zm00001d000417_T001 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:psbA description:Photosystem Q(B) protein

Sequence

MTAILERRESTSLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI
DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL
LGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTF
NFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYKFG
QEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGF
NFNQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAALEVPYLNG

Transcript Sequence

Transcript ID

Zm00001d000417_T001
Transcript Infomation

cdna contig:B73_RefGen_v4:B73V4_ctg121:20918:21979:-1 gene:Zm00001d000417 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:psbA description:Photosystem Q(B) protein

Sequence

ATGACTGCAATTTTAGAGAGACGCGAAAGTACAAGCCTGTGGGGTCGCTTCTGCAACTGG
ATAACTAGCACCGAAAACCGTCTTTACATTGGATGGTTCGGTGTTTTGATGATCCCTACC
TTATTGACCGCAACTTCCGTATTTATTATCGCCTTCATCGCTGCTCCTCCAGTAGATATT
GATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGT
GCTATTATTCCTACTTCTGCGGCGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCA
TCTGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTA
CTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGC
CCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATT
TACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTC
AACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTTCACATGTTA
GGTGTAGCTGGTGTATTCGGTGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACC
TCTAGTTTGATCAGGGAAACCACTGAAAATGAGTCTGCTAATGAGGGTTACAAATTTGGT
CAGGAAGAAGAGACTTATAATATTGTGGCTGCTCACGGTTATTTTGGTCGATTAATCTTC
CAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTA
GTAGGGATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCATTCAACCTAAATGGTTTC
AATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATC
ATCAACCGTGCTAATCTTGGTATGGAGGTAATGCACGAACGTAATGCTCACAACTTCCCT
CTAGACCTAGCTGCTCTTGAAGTTCCTTACCTTAATGGATAA