Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d000329_T002
CDS Infomation	cds contig:B73_RefGen_v4:B73V4_ctg247:803:19871:1 gene:Zm00001d000329 gene_biotype:protein_coding transcript_biotype:protein_coding description:DNA mismatch repair protein MSH5
Sequence	ATGAACATTGATTTGATTGGAAAGGCAAATTCTTCTATTACAGCAGAGCTGGATTACATG TCAGACCTGGTAGTTGGTGTGATTGATGTTCAACGGGGTAAGGAGAAAGGCTATGAAACC ATGGTGAAAGAAGGGTTATGTGATGAGCTGGATGAGCTGAGGATGGTGTATGAAGGTTTA CCTGACTTTCTGGAGCAGGTGTCAGATAATGAAAACGCTTCTTTACCTTTCTCATTTGGA TGCAGAATACCTCCACTAATAGTCTATGTACACCAAATAGGATACCTAATGTGCTTTTTC GACGAGAAGATTAGTGATGCCTTGTTGGCAGGACTTCCAGATTACGAATTTGCGCTGTTC ATATTTCATACAGACATGGAGAGAGCTATCATAAGGGATTTAGTGTGTCGCGTCCTTCAA TTTATACCTCAACTGACAAAAGCAGTGAACTTTGCCGCAGAACTTGATTGTATTTTATCA TTAGCAACTGTTGCCCACCAAAACAATTATGTGAGGCCCATCTTAACTGAAGATTCAATA CTCGAGATACATAATGGCAGACATGCTTTGCAGGAAATGACTGTTGATACCTTTATTCCA AATGATACCAAAATTCGTGATGCAGGAAGAATAAACATAATAACTGGGCCCAACTACTCA GGAAAAAGCATTTACATTAAGCAGGTGGCCTTGATAGTCTTTCTTGCTCATATCGGAAGC TTTGTTCCTGCTGATTCTGCTATTGTTGGATTGACAGATAGGATATTCTGTGCAATGGGA AGCAAATCCATGACAACCGAACAGTCAACTTTTATGATTGATTTACATCAAGTTGGAACA ATGCTCAGACATGCAACATCGAGGTCACTTTGTTTGTTGGATGAATTCGGTAAGGGCACC CTAACGGAAGATGGCATTGGTCTGCTTGGAGGTACTATCAGTCATTTTGCAAACTATGGT TCCCCCCCAAAGGTCCTTTTGTCAACACATCTGACAGAGATCTTCACCGAGAATTACCTA CCACAGTGTGAACATATCAAATGTTATGCCATGAGTGTTCTGAATCCTGATGGACAGACG AGCAATGAAGATATCACATTCCTTTATCGTTACAAGGTAACAATTTTTTTATTTGCCTTG CAGGTCTGCATTGTGCACAGCTTGCTGGTACGTGTTCCAAATGAAGTCGTCCAGAGAGCT GGCATTGTTTTGGAGGACATGCATTCCAAGAAACCTACGAGGCGCGTGACCAGTGAGAAA TTAACAGCAACAGACAAGCAGTACCAGGATGCAGTGACTAAACTGATGGCCTTCGATACA CAGAAAGGTGACCTGAACAGCTTCTTCCAGGAACTATTTCCCGTCGACTTGTAG

Peptide Sequence

PEP ID	Zm00001d000329_P002
PEP Infomation	pep contig:B73_RefGen_v4:B73V4_ctg247:803:19871:1 gene:Zm00001d000329 transcript:Zm00001d000329_T002 gene_biotype:protein_coding transcript_biotype:protein_coding description:DNA mismatch repair protein MSH5
Sequence	MNIDLIGKANSSITAELDYMSDLVVGVIDVQRGKEKGYETMVKEGLCDELDELRMVYEGL PDFLEQVSDNENASLPFSFGCRIPPLIVYVHQIGYLMCFFDEKISDALLAGLPDYEFALF IFHTDMERAIIRDLVCRVLQFIPQLTKAVNFAAELDCILSLATVAHQNNYVRPILTEDSI LEIHNGRHALQEMTVDTFIPNDTKIRDAGRINIITGPNYSGKSIYIKQVALIVFLAHIGS FVPADSAIVGLTDRIFCAMGSKSMTTEQSTFMIDLHQVGTMLRHATSRSLCLLDEFGKGT LTEDGIGLLGGTISHFANYGSPPKVLLSTHLTEIFTENYLPQCEHIKCYAMSVLNPDGQT SNEDITFLYRYKVTIFLFALQVCIVHSLLVRVPNEVVQRAGIVLEDMHSKKPTRRVTSEK LTATDKQYQDAVTKLMAFDTQKGDLNSFFQELFPVDL

Transcript Sequence

Transcript ID	Zm00001d000329_T002
Transcript Infomation	cdna contig:B73_RefGen_v4:B73V4_ctg247:803:19871:1 gene:Zm00001d000329 gene_biotype:protein_coding transcript_biotype:protein_coding description:DNA mismatch repair protein MSH5
Sequence	AAGTTCAACTCTCCAAATTCCTTCTGTACAAGCAGTGATTGGAACACATTTCTTAAGTGT ATTTGCTCTCTGCTGCATATAAACAAGATTTTTGAAGTAGGAATATCAGAGCATCTGGCA ATTAAGTTGCAACATATGAACATTGATTTGATTGGAAAGGCAAATTCTTCTATTACAGCA GAGCTGGATTACATGTCAGACCTGGTAGTTGGTGTGATTGATGTTCAACGGGGTAAGGAG AAAGGCTATGAAACCATGGTGAAAGAAGGGTTATGTGATGAGCTGGATGAGCTGAGGATG GTGTATGAAGGTTTACCTGACTTTCTGGAGCAGGTGTCAGATAATGAAAACGCTTCTTTA CCTTTCTCATTTGGATGCAGAATACCTCCACTAATAGTCTATGTACACCAAATAGGATAC CTAATGTGCTTTTTCGACGAGAAGATTAGTGATGCCTTGTTGGCAGGACTTCCAGATTAC GAATTTGCGCTGTTCATATTTCATACAGACATGGAGAGAGCTATCATAAGGGATTTAGTG TGTCGCGTCCTTCAATTTATACCTCAACTGACAAAAGCAGTGAACTTTGCCGCAGAACTT GATTGTATTTTATCATTAGCAACTGTTGCCCACCAAAACAATTATGTGAGGCCCATCTTA ACTGAAGATTCAATACTCGAGATACATAATGGCAGACATGCTTTGCAGGAAATGACTGTT GATACCTTTATTCCAAATGATACCAAAATTCGTGATGCAGGAAGAATAAACATAATAACT GGGCCCAACTACTCAGGAAAAAGCATTTACATTAAGCAGGTGGCCTTGATAGTCTTTCTT GCTCATATCGGAAGCTTTGTTCCTGCTGATTCTGCTATTGTTGGATTGACAGATAGGATA TTCTGTGCAATGGGAAGCAAATCCATGACAACCGAACAGTCAACTTTTATGATTGATTTA CATCAAGTTGGAACAATGCTCAGACATGCAACATCGAGGTCACTTTGTTTGTTGGATGAA TTCGGTAAGGGCACCCTAACGGAAGATGGCATTGGTCTGCTTGGAGGTACTATCAGTCAT TTTGCAAACTATGGTTCCCCCCCAAAGGTCCTTTTGTCAACACATCTGACAGAGATCTTC ACCGAGAATTACCTACCACAGTGTGAACATATCAAATGTTATGCCATGAGTGTTCTGAAT CCTGATGGACAGACGAGCAATGAAGATATCACATTCCTTTATCGTTACAAGGTAACAATT TTTTTATTTGCCTTGCAGGTCTGCATTGTGCACAGCTTGCTGGTACGTGTTCCAAATGAA GTCGTCCAGAGAGCTGGCATTGTTTTGGAGGACATGCATTCCAAGAAACCTACGAGGCGC GTGACCAGTGAGAAATTAACAGCAACAGACAAGCAGTACCAGGATGCAGTGACTAAACTG ATGGCCTTCGATACACAGAAAGGTGACCTGAACAGCTTCTTCCAGGAACTATTTCCCGTC GACTTGTAGCTCTGGAAATCAAGACTTGTCGCCAGCACTGGAACCTAGTAGAGGAAAAAG AGTGAATTCCATGTAGCGCCGTTAGCAGCTTTACATGTCTACTTATCGTGCTTGTTTCAG TGTTGTTCGGATGCCCATCCTGTCAAGCTATCGCGTGAATGGAACGGTCAGATCGGTTTG TAGTTTTAGCGCATACTCCGTATTGATGTATCTGAACTCTCGTGGCTTGCCGCTTGGATT TACGTATGACACAATGGAGCGAGATGCCGAGGTTACAGTATAACGTTTC