Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d000311_T004
CDS Infomation

cds contig:B73_RefGen_v4:B73V4_ctg51:18683:23525:-1 gene:Zm00001d000311 gene_biotype:protein_coding transcript_biotype:protein_coding description:Outer membrane OMP85 family protein
Sequence

ATGGGAGCTCAGCAGAGCGTCAACGCAGGGAAAGCCAAGGTGGATATGAAAGTCGATCTC
ACCCACATGCTGTGCGAGGCGCTGCTGCTGCCGCCCCTCAGAAGCTCTGGCGTCACGTTA
TCACAAATCGTTGGAAGGATCTCTCTCAAACATCCAAACCTCTTTGGGAGAAGTGAGAAG
TTGGATGTGATATTGGATAAAGGAATCAACGACTCCAATTTTGTCATTGCCTATAGACGC
CCTAGGGCTGAGTGGTTATCACAGCAATCATTTGTATTTCAGCACTCAATGACACCAGAA
GTTGCCGTCCATGGATTCCCAGCTGATAACTTCACACGATCAGGGAGCAGAGGGATAAAC
CTTAGTCGATTGTCATTTGGTTTGGAGCTTAATGAACCAGCTACATCAAACTGGACATCG
GGAACCAGTGTTAAATTTGAGAATATCCGTCCTGTTAATAACCAGGGCCACTCTATTGCC
AGAGACCATGATGGTTTTCCTCTGACATGCAGTGGTAATCTCCATGACAACATGATCATC
TTGAAGCAAGAATCTGGTTATGCAGATGTCAATGACAATAGCTTCTTAAAAGTAAACTTC
CAAATGGAACAGGGATTGCCACTTGTACCTAAGTCATTGACCTTCAATAGAGTTAAATGT
GCAGTTTCAAAAGGCATTAAGTTGGGTCCGACATTTTTGGTTACTAGTTTGACAGGCGGA
TCCATTGTTGGGGACATGGCACCTTATCAAGCTTTTGCCATAGGTGGACTTGGTAGTGTC
CGAGGCTATGGTGAGGGCGCTGTTGGTTCAGGAAGACTATGTCTAATTGCTAACTGCGAA
TATACGATTCCCTTGCATCTGGAGGGTTCTATTTTCATGGACTGTGGGAGTGACTTAGGG
TCTGCTCGTCATGTCCCTGGTAATCCAGCTCTGCGGCAGGGGAAACCAGGATTTGGTATT
GGATTTGGATACGGACTTCACTTCAACACTGACCTAGGTCAGATCCGTGTCGACTACGCT
ATGAATGCATTTAACCGCAAAACCATCTATTTTGGAATCAACAGTAGCGGTGGCTCTTAG

Peptide Sequence

PEP ID

Zm00001d000311_P004
PEP Infomation

pep contig:B73_RefGen_v4:B73V4_ctg51:18683:23525:-1 gene:Zm00001d000311 transcript:Zm00001d000311_T004 gene_biotype:protein_coding transcript_biotype:protein_coding description:Outer membrane OMP85 family protein
Sequence

MGAQQSVNAGKAKVDMKVDLTHMLCEALLLPPLRSSGVTLSQIVGRISLKHPNLFGRSEK
LDVILDKGINDSNFVIAYRRPRAEWLSQQSFVFQHSMTPEVAVHGFPADNFTRSGSRGIN
LSRLSFGLELNEPATSNWTSGTSVKFENIRPVNNQGHSIARDHDGFPLTCSGNLHDNMII
LKQESGYADVNDNSFLKVNFQMEQGLPLVPKSLTFNRVKCAVSKGIKLGPTFLVTSLTGG
SIVGDMAPYQAFAIGGLGSVRGYGEGAVGSGRLCLIANCEYTIPLHLEGSIFMDCGSDLG
SARHVPGNPALRQGKPGFGIGFGYGLHFNTDLGQIRVDYAMNAFNRKTIYFGINSSGGS

Transcript Sequence

Transcript ID

Zm00001d000311_T004
Transcript Infomation

cdna contig:B73_RefGen_v4:B73V4_ctg51:18683:23525:-1 gene:Zm00001d000311 gene_biotype:protein_coding transcript_biotype:protein_coding description:Outer membrane OMP85 family protein
Sequence

AGCCTCACTTCTCCCTCTGCCCCACGCAAAGCACCCAAGGCGCCCACGGCCCTACGGCCT
CGGCACCTCCCGCTCAAAATCCTCGCCGCGCCGCGCGGAGCGCCGTAGTGCCCGAGTTCG
CATGAAGTGTGCCTCCTCGCGCCCGCAGCCATGGGAGCTCAGCAGAGCGTCAACGCAGGG
AAAGCCAAGGTGGATATGAAAGTCGATCTCACCCACATGCTGTGCGAGGCGCTGCTGCTG
CCGCCCCTCAGAAGCTCTGGCGTCACGTTATCACAAATCGTTGGAAGGATCTCTCTCAAA
CATCCAAACCTCTTTGGGAGAAGTGAGAAGTTGGATGTGATATTGGATAAAGGAATCAAC
GACTCCAATTTTGTCATTGCCTATAGACGCCCTAGGGCTGAGTGGTTATCACAGCAATCA
TTTGTATTTCAGCACTCAATGACACCAGAAGTTGCCGTCCATGGATTCCCAGCTGATAAC
TTCACACGATCAGGGAGCAGAGGGATAAACCTTAGTCGATTGTCATTTGGTTTGGAGCTT
AATGAACCAGCTACATCAAACTGGACATCGGGAACCAGTGTTAAATTTGAGAATATCCGT
CCTGTTAATAACCAGGGCCACTCTATTGCCAGAGACCATGATGGTTTTCCTCTGACATGC
AGTGGTAATCTCCATGACAACATGATCATCTTGAAGCAAGAATCTGGTTATGCAGATGTC
AATGACAATAGCTTCTTAAAAGTAAACTTCCAAATGGAACAGGGATTGCCACTTGTACCT
AAGTCATTGACCTTCAATAGAGTTAAATGTGCAGTTTCAAAAGGCATTAAGTTGGGTCCG
ACATTTTTGGTTACTAGTTTGACAGGCGGATCCATTGTTGGGGACATGGCACCTTATCAA
GCTTTTGCCATAGGTGGACTTGGTAGTGTCCGAGGCTATGGTGAGGGCGCTGTTGGTTCA
GGAAGACTATGTCTAATTGCTAACTGCGAATATACGATTCCCTTGCATCTGGAGGGTTCT
ATTTTCATGGACTGTGGGAGTGACTTAGGGTCTGCTCGTCATGTCCCTGGTAATCCAGCT
CTGCGGCAGGGGAAACCAGGATTTGGTATTGGATTTGGATACGGACTTCACTTCAACACT
GACCTAGGTCAGATCCGTGTCGACTACGCTATGAATGCATTTAACCGCAAAACCATCTAT
TTTGGAATCAACAGTAGCGGTGGCTCTTAGGTTATGAAAGACATAGCTCTCACTTAACAT
AGACTGGCAATTCAATTCGATTCTTTTCCGTGGACATAGAAGGGGAGTTCTTTTTCTTGA
CAGTGTGTTCCGGACATGCCAGCAGAATCTTATTGTTTGTACTACGTGCTGGCATTCAAA
AGGTGTATAGTTGGGATC