Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d000236_T001
CDS Infomation

cds contig:B73_RefGen_v4:B73V4_ctg44:29069:33275:1 gene:Zm00001d000236 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:colored plant1 description: colored plant1
Sequence

ATGGCGCTCTCAGCTTGCCCGGCTCAGGAAGAACTGCTGCAGCCTGCTGGGAGGCCGTTG
AGGAAGCAGCTTGCTGCAGCCGCGAGGAGCATCAACTGGAGCTATTCCCTCTTCTGGTCC
ATTTCAAGCACTCAACGACCACGGGTGCTGACGTGGACGGACGGGTTCTACAATGGCGAG
GTGAAGACGCGTAAGATCTCCCACTCCGTGGAGCTGACAGCCGACCAGCTGCTCATGCAG
AGGAGCGAGCAGCTCCGGGAGCTCTACGAGGCCCTCCAGTCCGGCGAGTGCGACCGCCGC
GCGGCGCGGCCGGTGGGCTCGCTGTCGCCGGAGGACCTCGGGGACACCGAGTGGTACTAC
GTGATCTGCATGACCTACGCCTTCCTGCCTGGCCAAGGCTTGCCCGGCAGGAGTTCCGCG
AGCAACGAGCATGTCTGGCTGTGCAACGCGCACCTCGCCGGCAGCAAGGACTTCCCCCGC
GCGCTCCTGGCCAAGGTGCCGGAGGACCCGGACTTGATCAACCGAGCAACCGCAGCCTTT
CGGGAGCCGCAATGTCCGATATACTCGGAACAGCCGAGCTCCAACCCGTCAGCAGACGAA
ACCGGCGAGGCCGCAGACATAGCTGTGTTCGAGGGCCTCGATCACAATGCCATGGACATG
GAGACCGCAGGCATAGCTGTGTTCGAGGGCCTCGATCACAATGCCATGGACATGGAGACG
GTGACTGCCGCCGCCGGGAGACACGGAACCGGACAGGAGCTAGGAGAAGCCGACAGCCCG
TCAAATGCAAGCCTGGAGCACATCACCAAGGGGATCGACGAGTTCTACAACCTCTGCGAG
GAAATGGACGTGCAGCCGCTAGAGGATGCCTGGATAATGGACGGGTCTAATTTCGAAGTC
CCCTCGTCAGCGCTCCCGGTGGATGGCTCAAGCGCACCCGCTGATGGCTCTCGCGCGACC
AGTTTCGTGGCTTGGACGAGGTCATCGCAGTCCTGCTCCGGTGAAGCGGCGGCTGTGCCG
GTCATCGAAGAGCCGCAGAAATTGCTGAAGAAAGCGGTGGCCGGCGGCGGTGCTTGGGCG
AACACGAACTGCGGTGGCGGGGGCACGACGGTAACAGCCCAGGAAAACGGCGCCAAGAAC
CACGTCATGTTAGAGCGAAAGCGCCGGGAGAAGCTCAACGAGATGTTCCTCGTTCTCAAG
TCGTTGGTTCCCTCCATTCACAAGGTGGACAAAGCATCCATCCTCGCCGAAACTATAGCC
TACCTAAAGGAGCTTCAACGAAGGGTACAAGAACTGGAATCCAGGAGGCAAGGTGGCAGT
GGGTGTGTCAGCAAGAAAGTCTGTGTGGGCTCCAACTCCAAGAGGAAGAGCCCAGAGTTC
GCCGGTGGCGCGAAGGAGCACCCCTGGGTCCTCCCCATGGACGGTACCAGCAACGTCACC
GTCACCGTCTCTGACAGGGACGTGCTCCTGGAGGTGCAATGCCTGTGGGAGAAGCTCCTG
ATGACACGGGTGTTCGACGCCATCAAGAGCCTCCATTTGGACGCTCTCTCGGTTCAGGCT
TCGGCACTAGATGGCTTCATGAGGCTCAAGATAGGAGCTCAGTTTGCAGGCTCCGGCGCC
GTCGTGCCCGGAATGATCAGCCAATCTCTTCGTAAAGCTATAGGGAAGCGATGA

Peptide Sequence

PEP ID

Zm00001d000236_P001
PEP Infomation

pep contig:B73_RefGen_v4:B73V4_ctg44:29069:33275:1 gene:Zm00001d000236 transcript:Zm00001d000236_T001 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:colored plant1 description: colored plant1
Sequence

MALSACPAQEELLQPAGRPLRKQLAAAARSINWSYSLFWSISSTQRPRVLTWTDGFYNGE
VKTRKISHSVELTADQLLMQRSEQLRELYEALQSGECDRRAARPVGSLSPEDLGDTEWYY
VICMTYAFLPGQGLPGRSSASNEHVWLCNAHLAGSKDFPRALLAKVPEDPDLINRATAAF
REPQCPIYSEQPSSNPSADETGEAADIAVFEGLDHNAMDMETAGIAVFEGLDHNAMDMET
VTAAAGRHGTGQELGEADSPSNASLEHITKGIDEFYNLCEEMDVQPLEDAWIMDGSNFEV
PSSALPVDGSSAPADGSRATSFVAWTRSSQSCSGEAAAVPVIEEPQKLLKKAVAGGGAWA
NTNCGGGGTTVTAQENGAKNHVMLERKRREKLNEMFLVLKSLVPSIHKVDKASILAETIA
YLKELQRRVQELESRRQGGSGCVSKKVCVGSNSKRKSPEFAGGAKEHPWVLPMDGTSNVT
VTVSDRDVLLEVQCLWEKLLMTRVFDAIKSLHLDALSVQASALDGFMRLKIGAQFAGSGA
VVPGMISQSLRKAIGKR

Transcript Sequence

Transcript ID

Zm00001d000236_T001
Transcript Infomation

cdna contig:B73_RefGen_v4:B73V4_ctg44:29069:33275:1 gene:Zm00001d000236 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:colored plant1 description: colored plant1
Sequence

ATGGCGCTCTCAGCTTGCCCGGCTCAGGAAGAACTGCTGCAGCCTGCTGGGAGGCCGTTG
AGGAAGCAGCTTGCTGCAGCCGCGAGGAGCATCAACTGGAGCTATTCCCTCTTCTGGTCC
ATTTCAAGCACTCAACGACCACGGGTGCTGACGTGGACGGACGGGTTCTACAATGGCGAG
GTGAAGACGCGTAAGATCTCCCACTCCGTGGAGCTGACAGCCGACCAGCTGCTCATGCAG
AGGAGCGAGCAGCTCCGGGAGCTCTACGAGGCCCTCCAGTCCGGCGAGTGCGACCGCCGC
GCGGCGCGGCCGGTGGGCTCGCTGTCGCCGGAGGACCTCGGGGACACCGAGTGGTACTAC
GTGATCTGCATGACCTACGCCTTCCTGCCTGGCCAAGGCTTGCCCGGCAGGAGTTCCGCG
AGCAACGAGCATGTCTGGCTGTGCAACGCGCACCTCGCCGGCAGCAAGGACTTCCCCCGC
GCGCTCCTGGCCAAGGTGCCGGAGGACCCGGACTTGATCAACCGAGCAACCGCAGCCTTT
CGGGAGCCGCAATGTCCGATATACTCGGAACAGCCGAGCTCCAACCCGTCAGCAGACGAA
ACCGGCGAGGCCGCAGACATAGCTGTGTTCGAGGGCCTCGATCACAATGCCATGGACATG
GAGACCGCAGGCATAGCTGTGTTCGAGGGCCTCGATCACAATGCCATGGACATGGAGACG
GTGACTGCCGCCGCCGGGAGACACGGAACCGGACAGGAGCTAGGAGAAGCCGACAGCCCG
TCAAATGCAAGCCTGGAGCACATCACCAAGGGGATCGACGAGTTCTACAACCTCTGCGAG
GAAATGGACGTGCAGCCGCTAGAGGATGCCTGGATAATGGACGGGTCTAATTTCGAAGTC
CCCTCGTCAGCGCTCCCGGTGGATGGCTCAAGCGCACCCGCTGATGGCTCTCGCGCGACC
AGTTTCGTGGCTTGGACGAGGTCATCGCAGTCCTGCTCCGGTGAAGCGGCGGCTGTGCCG
GTCATCGAAGAGCCGCAGAAATTGCTGAAGAAAGCGGTGGCCGGCGGCGGTGCTTGGGCG
AACACGAACTGCGGTGGCGGGGGCACGACGGTAACAGCCCAGGAAAACGGCGCCAAGAAC
CACGTCATGTTAGAGCGAAAGCGCCGGGAGAAGCTCAACGAGATGTTCCTCGTTCTCAAG
TCGTTGGTTCCCTCCATTCACAAGGTGGACAAAGCATCCATCCTCGCCGAAACTATAGCC
TACCTAAAGGAGCTTCAACGAAGGGTACAAGAACTGGAATCCAGGAGGCAAGGTGGCAGT
GGGTGTGTCAGCAAGAAAGTCTGTGTGGGCTCCAACTCCAAGAGGAAGAGCCCAGAGTTC
GCCGGTGGCGCGAAGGAGCACCCCTGGGTCCTCCCCATGGACGGTACCAGCAACGTCACC
GTCACCGTCTCTGACAGGGACGTGCTCCTGGAGGTGCAATGCCTGTGGGAGAAGCTCCTG
ATGACACGGGTGTTCGACGCCATCAAGAGCCTCCATTTGGACGCTCTCTCGGTTCAGGCT
TCGGCACTAGATGGCTTCATGAGGCTCAAGATAGGAGCTCAGTTTGCAGGCTCCGGCGCC
GTCGTGCCCGGAATGATCAGCCAATCTCTTCGTAAAGCTATAGGGAAGCGATGAAAGGGC
GCTACATGTGAAGCTTAATTAATGGAAGCAAACTTGTATTTCTTGTGCAAAAGCTTACTA
TATATTTCTGCAAAACCTGGTGTGCCTTGTTTTGATTTTCAGTCGCCAATTGTGCCCTTG
TTTTTATCAAGTGATGATCTACACTATATATATGGAATATTTG