Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d000205_T003
CDS Infomation

cds contig:B73_RefGen_v4:B73V4_ctg129:44774:52582:-1 gene:Zm00001d000205 gene_biotype:protein_coding transcript_biotype:protein_coding description:Carboxypeptidase SOL1
Sequence

ATGGGGATCTCGCACCTCCAGCCCGTCCTCCTCCTCCTCATGCTCCGGGCTCTCGCGTCG
CTTCCCACGCAGGCCGCCGCGAGAGGCGGCCACGATCCGTCAGATGATGGAGCCCACGGG
CCATTTTCACGTAAACTTCTTGAAGATAAGCCTCAGATCACAGAAGAAATGGTCCGTGGA
TATATGAGCAACACTGAGCTTGAGACTGCTGTACATGCCTTTGGAAGTCGTTGTTCCAAT
ATCTCCAGGGTGTACAGGGATAACACAAACCTGCTATCAGCATTGGAAAGATGGGTGATT
GAAATATCAGACAAGCCCAGGCAAAGGGAATCTGAACCAGCATTCAAGTTCATTGGAAAT
GTTCATGGTGATGAGCCTGTTGGAAGAGAGGTTCTTATGCATCTTGCAAATTGGCTGTGT
GATAACTATCTGAAAGATTCACTGGCAACTCTCATTGTTGAGAACATGCACCTTCATATA
CTTCCGACGATGAACCCTGATGGGTTTGCTCTTAGATGGCGTGGTAATGCAAACAATATT
GATCTCAACAGGGATTTTCCTGACCAATTCTTCCCCGTTAACAACGATATTGACTACAGA
CAGCCTGAAACTAGAGCCATTATGAATTGGGTAAAGCAAGAACACTTCACGGCTTCTGCT
AGCTTGCATGGGGGGGCTCTTGTTGCCAACTATCCATGGGATGGAACTAGAGACACAAGC
AAACACTACTACGGATGTCCTGACGATAAGACATTCCAGCACATGGCATCTGTGTATAGT
CGGTCTCACTATAACATGTCTTTGAGCAAAGAATTTGAAGGAGGGATAACAAATGGAGCA
TTCTGGTACCCAATATATGGTGGTATGCAGGACTGGAACTATATACATGGAGGCTGCTTT
GAGTTAACTCTGGAGATTAGTGACACAAAGTGGCCAAAAGCAGATGAGCTTCCTATCATC
TGGGAACACAATAGGATGAGTATGCTCAATCTTCTAGCAAGCCTAATAAAGTCAGGGGTT
CATGGAAGGATATTTGCAGCAGATACGGGCAGGCCTGTACCCGGCTCAGTGATGATAAAG
GGCATTGATTCCAAGGTAAGCGCGAGCAGCACTTTTGGAGATTACCATCGAATTGTTGCG
CCTGGTGAGACATATGAAGTGGTGGCATCGATGCGAGGCTTCCGGCAAAAATCTACACGC
ATCAGGCTGGAGCAGGAAGCCGTCAGCCTGGATTTCATCCTGGACCCGGATGGAGCCGAT
GGGCAGACGAAGCTGCTGCCCCGTAGTAACGACCGGGGCTGCCGCTGCGACAACGACAAC
GCCGCCAAGCCGTTCCATGTCCACGAAGCTCACCTCTGGTTGTACCTCCTTATCGTGTCC
GTTCTCCTGGCCCTCTACGTAGTCTTCAAGAGGAAAACGGTGCCGAGGCTGCTGGCGTAT
AGACACTCATCGTCACTCAGACGGCCTGTTGCTGTATAA

Peptide Sequence

PEP ID

Zm00001d000205_P003
PEP Infomation

pep contig:B73_RefGen_v4:B73V4_ctg129:44774:52582:-1 gene:Zm00001d000205 transcript:Zm00001d000205_T003 gene_biotype:protein_coding transcript_biotype:protein_coding description:Carboxypeptidase SOL1
Sequence

MGISHLQPVLLLLMLRALASLPTQAAARGGHDPSDDGAHGPFSRKLLEDKPQITEEMVRG
YMSNTELETAVHAFGSRCSNISRVYRDNTNLLSALERWVIEISDKPRQRESEPAFKFIGN
VHGDEPVGREVLMHLANWLCDNYLKDSLATLIVENMHLHILPTMNPDGFALRWRGNANNI
DLNRDFPDQFFPVNNDIDYRQPETRAIMNWVKQEHFTASASLHGGALVANYPWDGTRDTS
KHYYGCPDDKTFQHMASVYSRSHYNMSLSKEFEGGITNGAFWYPIYGGMQDWNYIHGGCF
ELTLEISDTKWPKADELPIIWEHNRMSMLNLLASLIKSGVHGRIFAADTGRPVPGSVMIK
GIDSKVSASSTFGDYHRIVAPGETYEVVASMRGFRQKSTRIRLEQEAVSLDFILDPDGAD
GQTKLLPRSNDRGCRCDNDNAAKPFHVHEAHLWLYLLIVSVLLALYVVFKRKTVPRLLAY
RHSSSLRRPVAV

Transcript Sequence

Transcript ID

Zm00001d000205_T003
Transcript Infomation

cdna contig:B73_RefGen_v4:B73V4_ctg129:44774:52582:-1 gene:Zm00001d000205 gene_biotype:protein_coding transcript_biotype:protein_coding description:Carboxypeptidase SOL1
Sequence

AGTCGATGTCGATCCCTCTCCCGAACGAACCAGTCAAACACACACCGGCCTCGCAGTCGC
AGCCTCGCTCCGGAGGCGGAGCGCCGGAGCCCCGCCCACCTCCCCTAAACGGCCAGGGCC
TGACCACCCCCACCTCAGTCCCTCTCCTGTGGGCGGCGTCCTCCCGCGCCCATGGGGATC
TCGCACCTCCAGCCCGTCCTCCTCCTCCTCATGCTCCGGGCTCTCGCGTCGCTTCCCACG
CAGGCCGCCGCGAGAGGCGGCCACGATCCGTCAGATGATGGAGCCCACGGGCCATTTTCA
CGTAAACTTCTTGAAGATAAGCCTCAGATCACAGAAGAAATGGTCCGTGGATATATGAGC
AACACTGAGCTTGAGACTGCTGTACATGCCTTTGGAAGTCGTTGTTCCAATATCTCCAGG
GTGTACAGGGATAACACAAACCTGCTATCAGCATTGGAAAGATGGGTGATTGAAATATCA
GACAAGCCCAGGCAAAGGGAATCTGAACCAGCATTCAAGTTCATTGGAAATGTTCATGGT
GATGAGCCTGTTGGAAGAGAGGTTCTTATGCATCTTGCAAATTGGCTGTGTGATAACTAT
CTGAAAGATTCACTGGCAACTCTCATTGTTGAGAACATGCACCTTCATATACTTCCGACG
ATGAACCCTGATGGGTTTGCTCTTAGATGGCGTGGTAATGCAAACAATATTGATCTCAAC
AGGGATTTTCCTGACCAATTCTTCCCCGTTAACAACGATATTGACTACAGACAGCCTGAA
ACTAGAGCCATTATGAATTGGGTAAAGCAAGAACACTTCACGGCTTCTGCTAGCTTGCAT
GGGGGGGCTCTTGTTGCCAACTATCCATGGGATGGAACTAGAGACACAAGCAAACACTAC
TACGGATGTCCTGACGATAAGACATTCCAGCACATGGCATCTGTGTATAGTCGGTCTCAC
TATAACATGTCTTTGAGCAAAGAATTTGAAGGAGGGATAACAAATGGAGCATTCTGGTAC
CCAATATATGGTGGTATGCAGGACTGGAACTATATACATGGAGGCTGCTTTGAGTTAACT
CTGGAGATTAGTGACACAAAGTGGCCAAAAGCAGATGAGCTTCCTATCATCTGGGAACAC
AATAGGATGAGTATGCTCAATCTTCTAGCAAGCCTAATAAAGTCAGGGGTTCATGGAAGG
ATATTTGCAGCAGATACGGGCAGGCCTGTACCCGGCTCAGTGATGATAAAGGGCATTGAT
TCCAAGGTAAGCGCGAGCAGCACTTTTGGAGATTACCATCGAATTGTTGCGCCTGGTGAG
ACATATGAAGTGGTGGCATCGATGCGAGGCTTCCGGCAAAAATCTACACGCATCAGGCTG
GAGCAGGAAGCCGTCAGCCTGGATTTCATCCTGGACCCGGATGGAGCCGATGGGCAGACG
AAGCTGCTGCCCCGTAGTAACGACCGGGGCTGCCGCTGCGACAACGACAACGCCGCCAAG
CCGTTCCATGTCCACGAAGCTCACCTCTGGTTGTACCTCCTTATCGTGTCCGTTCTCCTG
GCCCTCTACGTAGTCTTCAAGAGGAAAACGGTGCCGAGGCTGCTGGCGTATAGACACTCA
TCGTCACTCAGACGGCCTGTTGCTGTATAAGAGGAACTAATTTTGTGGTCTAGGCGGATA
GTTTTGTACTACCTCTGTTCTCGAATAGTTGTTGTCCGCTAGTTAATTTTTATAGCTAGT
TCATTTTTATACTAAAATGTGACAAATAGAAAAGAACGGAGGGAAGGAGCAACTGAAGTT
AGTCTTCTCTTTGCCAAAACGGTCGGTTGCTGTATAAGTTGAAGGATGGGTAATGTACCA
TGGAAATGACATTTTTTTTGAATCAATGAAATACATGTTGCGTTGATGACAAGG