Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Zea mays ) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d000152_T007
CDS Infomation	cds contig:B73_RefGen_v4:B73V4_ctg75:176200:181485:1 gene:Zm00001d000152 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein
Sequence	ATGCGCCGCCTCCCGCCCCTCCCCCGGCCCGCGGCCGCCGTCGCCTCGACATCCACCCCG GACATCGTCGCGGAGCTCGGCCGCGTCCTCTCCACGCGCCGCTGGAACAAGGGCAGCGCC TACAAGCGGCTGTCCCCCTCCGTGACGGCCGCGCACGTGGCCGACCTCTTCCGCGCCCCG GTGTCCCCTCTCGACCCGGCCACCGCTCTGGCCTTCTTCGAGTGTGTCGCGCGCCGCCCC GGGTTCCGCCACACCGCCGCCTCCCACGCCGCGCTGCTCCAGCTCCTCGCCCGCCGCCGC GCGCCCGCCAACTACGACAAGCTCGTCCTCTCCATGATTAGCTGCTCCGGCACCGCAGAG GACGTGCGCGAGGCCGTCGACGCAATTCAGGCAATCCGTCGAGTGGGTGGTAAGCGACTC GTGCTGTCCCCAAAGTGCTACAACTTGGCGCTCAGGTCGCTGCTGCGATTCGACATGACG GAGTATATGGGGAAGCTGTACTCGCACCTCGTGCAGGAGGGATTGTTGCCAGACACGGTG ACTTACAACACTATGATCATGGCATACTGCAAGAAGGGCAGTCTCGCCATAGCACACCGG TATTTCTGCTTGTTGAGGGAGTCTGGGATGCAGATGGATACATACACATGTAATGCACTG TTGCTGGGGTACTGCCGAACAAGTGACTTGAGAAAGGCTTGCTGGCTACTCATGATGATG CCGCTGATGGGTTGCAGGAGGAACGAGTACTCCTACACCATTTTGATTCAGGGGCTCTGT GAAGCACGGTGTGTAAGGGAGGCACTTGTGCTTGTGTTCATGATGGTACACGATGGGTGC TCCCTGAATCTGCACACGTATACACTCTTGATAAAAGGTCTTTGTAAGGAGGGCAGGATT CATGATGCCAGGGGGTTGCTTGATGAAATGCCTTTGAGAGGGGTGGTACCAAGTGTTTGG ACTTATAATGCAATGATTGATGGGTATTGTAAGTCAGGAAGGATGAAGGATGCATTGGGG ATTAAAGCACTGATGGAACAAAATGGGTGTAATCCAGATGACTGGACATACAACAGTCTG ATTTATGGCCTATGTGGTGGGAAGCTAGACGAAGCCGAAGAATTGCTGAATGGCGCTATT GCAAGGGGCTTCACACCTACAGTTATCACATTCACTAACCTGATTAATGGGTATTGCAAG GCTGAAAGGATTGATGATGCACTCAGGGTAAAGAGTAATATGATATCAAGCAATTGCAAG CTTGATTTACAGGCATATGGAGTGTTGATTAATGTCCTCATCAAGAAGTGTAGATTAAAA GAGGCTAAAGAGACGCTGAATGAGATGTTTGCAAATGGTTTAGCTCCTAATGTTGTCACT TACACTTCTATAATTGATGGGTATTGCAAGGTTGGGATGGTTGGTGCTGCACTAGAGGTC TTCAAATTGATGGAACATGAAGGCTGCCATCCAAATGCCTGGACTTATGGTTCTTTGATA TATGGGTTAATTCAGGATAAAAAGCTTCATAAGGCAATGGCTTTAATAACTAAAATGCAA GAGGATGGGATAACTCCTGGTGTTATCACTTATACTACTCTGATTCAAGGCCAGTGCAAA AAACATGAATTTGATAATGCTTTCAGGTTATTTGAAATGATGGAACAGAATGGCTTGACA CCTGATGAGCAAGCGTACAATGTCCTAACTGATGCACTATGCAAGTCTGGAAGAGCTGAA GAAGCTTATTCATTTCTTGTCAGGAAGGGAGTCGTCCTCACAAAGGTAACATATACATCT TTAGTTGATGGTTTTAGCAAGGCAGGCAATACTGACTTTGCTGCCGTCCTTATAGAGAAG ATGGTCAATGAGGGTTGTAAGGCAGATTTGTACACATATAGTGTATTGTTGCAGGCATTA TGTAAACAAAAAAAACTGAATGAAGCTTTGTCTATACTGGATCAGATGACTGTAAGTGGA GTCAAGTGTAACATTGTTGCTTATACAATAATTATCAGTGAAATGATCAAAGAAGGGAAG CATGACCATGCTAAAAGCTTGTTCAATGAAATGATTTCATCAGGACATAAGCCTAGTGCA ACCACATATACTGTATTCATTAGCTCGTACTGCAAGATAGGTCGAATAGAGGAGGCTGAG CATCTAATTGGGGAAATGGAAAGAGACGGTGTCACACCTGATGTGGTAACCTATAATATA TTCATTAATGGTTGTGGTCATATGGGATATATTGATCGTGCATTTTCTACTCTGAAGCGC ATGGTGGATGCATCATGTGAGCCAAATTGCTGGACTTATTGGCTTTTGCTCAAACATTTT CTAAAAATGAGTTTGATCAATGCTCACTATGTAGACACATCTGGCATGTGGAACTGGATT GAACTGAACATGGTTTGGCAGCTTCTTGAAAGGATGATGAAGCATGGTTTAAATCCTACA GTAGTGACATACAGTTCTATCATTGCAGGATTCTGCAAAGCAACACGACTAGAAGAAGCA TGTGTGCTTCTTGATCATATGCTTGGAAAAGATATATCTCCCAATGAAGAGATATACACA ATGCTTATCAAGTGTTGTTGTGATATCAAGCTCTTTGGAAAGGCTGTGTCATTTGTTACC GACATGATAGAATTTGGGTTTCAGCCTCAGCTTGAGTCCTACCACTACCTTATTGTAGGC CTCTGTGATGAGGGGGACTATGACAGGGCTAAATCACTGTTCTGTGACTTACTTGGGATG GACTATAATCATAATGAAGTTGCATGGAAAATTTTGAATGATGGTTTGCTCAAAGCTGGC CATGTGGATTTTTGTTCACAGTTGCTGGCTGCTATGGATAATAGACACTGTCGGATTGAC TCTGAGTCATATTCAATGTTGACTGATAGCATTCGTGAGGCTTCTGGCAGTGTGGTCAGC GAACTCAGAGGAGAAGCTGCCTGA

Peptide Sequence

PEP ID	Zm00001d000152_P007
PEP Infomation	pep contig:B73_RefGen_v4:B73V4_ctg75:176200:181485:1 gene:Zm00001d000152 transcript:Zm00001d000152_T007 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein
Sequence	MRRLPPLPRPAAAVASTSTPDIVAELGRVLSTRRWNKGSAYKRLSPSVTAAHVADLFRAP VSPLDPATALAFFECVARRPGFRHTAASHAALLQLLARRRAPANYDKLVLSMISCSGTAE DVREAVDAIQAIRRVGGKRLVLSPKCYNLALRSLLRFDMTEYMGKLYSHLVQEGLLPDTV TYNTMIMAYCKKGSLAIAHRYFCLLRESGMQMDTYTCNALLLGYCRTSDLRKACWLLMMM PLMGCRRNEYSYTILIQGLCEARCVREALVLVFMMVHDGCSLNLHTYTLLIKGLCKEGRI HDARGLLDEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALMEQNGCNPDDWTYNSL IYGLCGGKLDEAEELLNGAIARGFTPTVITFTNLINGYCKAERIDDALRVKSNMISSNCK LDLQAYGVLINVLIKKCRLKEAKETLNEMFANGLAPNVVTYTSIIDGYCKVGMVGAALEV FKLMEHEGCHPNAWTYGSLIYGLIQDKKLHKAMALITKMQEDGITPGVITYTTLIQGQCK KHEFDNAFRLFEMMEQNGLTPDEQAYNVLTDALCKSGRAEEAYSFLVRKGVVLTKVTYTS LVDGFSKAGNTDFAAVLIEKMVNEGCKADLYTYSVLLQALCKQKKLNEALSILDQMTVSG VKCNIVAYTIIISEMIKEGKHDHAKSLFNEMISSGHKPSATTYTVFISSYCKIGRIEEAE HLIGEMERDGVTPDVVTYNIFINGCGHMGYIDRAFSTLKRMVDASCEPNCWTYWLLLKHF LKMSLINAHYVDTSGMWNWIELNMVWQLLERMMKHGLNPTVVTYSSIIAGFCKATRLEEA CVLLDHMLGKDISPNEEIYTMLIKCCCDIKLFGKAVSFVTDMIEFGFQPQLESYHYLIVG LCDEGDYDRAKSLFCDLLGMDYNHNEVAWKILNDGLLKAGHVDFCSQLLAAMDNRHCRID SESYSMLTDSIREASGSVVSELRGEAA

Transcript Sequence

Transcript ID	Zm00001d000152_T007
Transcript Infomation	cdna contig:B73_RefGen_v4:B73V4_ctg75:176200:181485:1 gene:Zm00001d000152 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein
Sequence	AGAGTCGGGCATTTCGTTCCGCTTCGCCGCGGCCGCCGCCTCCGCCTCCGTGTCGCCGCC GCCCCGCAGAACCCTAAAGGCCGCCGCCACCATGCGCCGCCTCCCGCCCCTCCCCCGGCC CGCGGCCGCCGTCGCCTCGACATCCACCCCGGACATCGTCGCGGAGCTCGGCCGCGTCCT CTCCACGCGCCGCTGGAACAAGGGCAGCGCCTACAAGCGGCTGTCCCCCTCCGTGACGGC CGCGCACGTGGCCGACCTCTTCCGCGCCCCGGTGTCCCCTCTCGACCCGGCCACCGCTCT GGCCTTCTTCGAGTGTGTCGCGCGCCGCCCCGGGTTCCGCCACACCGCCGCCTCCCACGC CGCGCTGCTCCAGCTCCTCGCCCGCCGCCGCGCGCCCGCCAACTACGACAAGCTCGTCCT CTCCATGATTAGCTGCTCCGGCACCGCAGAGGACGTGCGCGAGGCCGTCGACGCAATTCA GGCAATCCGTCGAGTGGGTGGTAAGCGACTCGTGCTGTCCCCAAAGTGCTACAACTTGGC GCTCAGGTCGCTGCTGCGATTCGACATGACGGAGTATATGGGGAAGCTGTACTCGCACCT CGTGCAGGAGGGATTGTTGCCAGACACGGTGACTTACAACACTATGATCATGGCATACTG CAAGAAGGGCAGTCTCGCCATAGCACACCGGTATTTCTGCTTGTTGAGGGAGTCTGGGAT GCAGATGGATACATACACATGTAATGCACTGTTGCTGGGGTACTGCCGAACAAGTGACTT GAGAAAGGCTTGCTGGCTACTCATGATGATGCCGCTGATGGGTTGCAGGAGGAACGAGTA CTCCTACACCATTTTGATTCAGGGGCTCTGTGAAGCACGGTGTGTAAGGGAGGCACTTGT GCTTGTGTTCATGATGGTACACGATGGGTGCTCCCTGAATCTGCACACGTATACACTCTT GATAAAAGGTCTTTGTAAGGAGGGCAGGATTCATGATGCCAGGGGGTTGCTTGATGAAAT GCCTTTGAGAGGGGTGGTACCAAGTGTTTGGACTTATAATGCAATGATTGATGGGTATTG TAAGTCAGGAAGGATGAAGGATGCATTGGGGATTAAAGCACTGATGGAACAAAATGGGTG TAATCCAGATGACTGGACATACAACAGTCTGATTTATGGCCTATGTGGTGGGAAGCTAGA CGAAGCCGAAGAATTGCTGAATGGCGCTATTGCAAGGGGCTTCACACCTACAGTTATCAC ATTCACTAACCTGATTAATGGGTATTGCAAGGCTGAAAGGATTGATGATGCACTCAGGGT AAAGAGTAATATGATATCAAGCAATTGCAAGCTTGATTTACAGGCATATGGAGTGTTGAT TAATGTCCTCATCAAGAAGTGTAGATTAAAAGAGGCTAAAGAGACGCTGAATGAGATGTT TGCAAATGGTTTAGCTCCTAATGTTGTCACTTACACTTCTATAATTGATGGGTATTGCAA GGTTGGGATGGTTGGTGCTGCACTAGAGGTCTTCAAATTGATGGAACATGAAGGCTGCCA TCCAAATGCCTGGACTTATGGTTCTTTGATATATGGGTTAATTCAGGATAAAAAGCTTCA TAAGGCAATGGCTTTAATAACTAAAATGCAAGAGGATGGGATAACTCCTGGTGTTATCAC TTATACTACTCTGATTCAAGGCCAGTGCAAAAAACATGAATTTGATAATGCTTTCAGGTT ATTTGAAATGATGGAACAGAATGGCTTGACACCTGATGAGCAAGCGTACAATGTCCTAAC TGATGCACTATGCAAGTCTGGAAGAGCTGAAGAAGCTTATTCATTTCTTGTCAGGAAGGG AGTCGTCCTCACAAAGGTAACATATACATCTTTAGTTGATGGTTTTAGCAAGGCAGGCAA TACTGACTTTGCTGCCGTCCTTATAGAGAAGATGGTCAATGAGGGTTGTAAGGCAGATTT GTACACATATAGTGTATTGTTGCAGGCATTATGTAAACAAAAAAAACTGAATGAAGCTTT GTCTATACTGGATCAGATGACTGTAAGTGGAGTCAAGTGTAACATTGTTGCTTATACAAT AATTATCAGTGAAATGATCAAAGAAGGGAAGCATGACCATGCTAAAAGCTTGTTCAATGA AATGATTTCATCAGGACATAAGCCTAGTGCAACCACATATACTGTATTCATTAGCTCGTA CTGCAAGATAGGTCGAATAGAGGAGGCTGAGCATCTAATTGGGGAAATGGAAAGAGACGG TGTCACACCTGATGTGGTAACCTATAATATATTCATTAATGGTTGTGGTCATATGGGATA TATTGATCGTGCATTTTCTACTCTGAAGCGCATGGTGGATGCATCATGTGAGCCAAATTG CTGGACTTATTGGCTTTTGCTCAAACATTTTCTAAAAATGAGTTTGATCAATGCTCACTA TGTAGACACATCTGGCATGTGGAACTGGATTGAACTGAACATGGTTTGGCAGCTTCTTGA AAGGATGATGAAGCATGGTTTAAATCCTACAGTAGTGACATACAGTTCTATCATTGCAGG ATTCTGCAAAGCAACACGACTAGAAGAAGCATGTGTGCTTCTTGATCATATGCTTGGAAA AGATATATCTCCCAATGAAGAGATATACACAATGCTTATCAAGTGTTGTTGTGATATCAA GCTCTTTGGAAAGGCTGTGTCATTTGTTACCGACATGATAGAATTTGGGTTTCAGCCTCA GCTTGAGTCCTACCACTACCTTATTGTAGGCCTCTGTGATGAGGGGGACTATGACAGGGC TAAATCACTGTTCTGTGACTTACTTGGGATGGACTATAATCATAATGAAGTTGCATGGAA AATTTTGAATGATGGTTTGCTCAAAGCTGGCCATGTGGATTTTTGTTCACAGTTGCTGGC TGCTATGGATAATAGACACTGTCGGATTGACTCTGAGTCATATTCAATGTTGACTGATAG CATTCGTGAGGCTTCTGGCAGTGTGGTCAGCGAACTCAGAGGAGAAGCTGCCTGACCGAT GTGCAAGTGTCTTTGGAGTTTCGTCAGAATCAATGCAGTGTTCCTATGATTCCCGAGGAA ACAGTGTCCCAACAATCCTCTTGATGATGCAGAGATGCCTTTATGAACATGGAGGTCTTC AGGCAGAAGGTATCTTCCGAATAAACGCAGAAAATAGCCAGGAAGAATTTGTGAGAGACC AATTAAATAATGGAATTGTTCCTGATGGCGTTGATGTCCACTGTTTGGCAGGTCTAATCA AAGCCTGGTTCAGAGAAATGCCGAGGGGGGTACTGGACTCTATCCCACCTGAACAGGTGA TGCAATGCCAATCTGAAGAGGACTGTGCTTGGGTATCGAAATGTCTTCCACTAGCTGAAG CAGCTTTGCTTGACTAGGCTGTTAATCTGATGGATGATGTAGTCCAGGAAGAACAGATAA ACAAGATGAATGATCACAATATTGCTATGGTTTTTGTGCCAAATACGACTCAGGTATTGC ATTGTGCTAATATTGTAGCAATTAGCAAACTAGCAATATATACCTCACCCCGAGCAGTGG AACGGTTATGCGTGC