Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d000060_T001
CDS Infomation

cds contig:B73_RefGen_v4:B73V4_ctg10:292300:293833:1 gene:Zm00001d000060 gene_biotype:protein_coding transcript_biotype:protein_coding description:NAD(P)-linked oxidoreductase superfamily protein
Sequence

ATGGCTGCCGGCGGTGCCGACCAAAGGGGGAATAATGCTGCGACGACGACTTTTGTGGTG
CCAGCGGTGGCGCTGAGCTTGGGGAAGCCGATGCCGCGGGTGGGCTTCGGCACGGCAACG
GCGACGCTGGGCCAAGCGGAGGGCCGCGCCGGCGTGACGGAGGCGATCCTCCGCGCCCTG
GACGCTGGGTACCGCCACTTTGACACCGCCGCAGTCTACAACACGGAGGCCTCGCTCGGG
GACGCGGTCGTTGAGGCCGTGCGCGCCGGGACTGTCGCCTCCCGTGACGATCTCTACGTC
ACGTCCAAGCTCTGGATCACCGACGCGCACCCCGGCCGCGTCCTACCGGCTCTCCACAGG
ACACTGCAGAATCTGCAGATGTCGTACGTGGACCTGTTCCTGATTCACCACCCGGTGAGC
ATGCGGGCGCCGGCCGACGACGAGGCTGAAGGAGCAGGCCCCGCGGTGGTGGTGAAGAAA
GACCTGGTGGCCATGGACATGGAGGGCGTGTGGGAGGAGATGGAGGAGTGCCACAGGCGA
GGGCTGGCCAGGGCCATCGGCGTCAGCAACTTCAGCTGCAAGAAGCTAGAGCACCTGCTC
TCCGTCGCCAAGATCCCTCCGGCTGTCAACCAGGTGGAGGTGAACCCGTACTGCCGGCAG
GAGAAGGTCAGGAATTTCTGCAGGGCCAATGGTATCCAGCTCTGCGGCTACTCTGCGATG
GGTGCGAGCGGCACAGCGTGGGCCAACAACTCCGTCATGGACTCCCCTGTCCTCAAACAA
ATCGCCCACGCTCGCGGCAAAACCGTCGCCCAGGTGTGCATTAGGTGGGTTTACGAGCAG
GGTGACTGCGTGATCGTCAAGAGCTTTAACCAGAGCAGGATGCGAGAGAACCTCCACATC
TTCGACTGGGAGCTCACCGACGATGACCACCGCAAGATTAGCGAGCTCCCTGAGTCCAGG
GGCAACTACGATTTCTTGATCCATGAATCTGGGCCGTACAAAACAGCACAAGAGTTATGG
GACGGTGAGATCACAGCCGGCCAATCTAACCAAACGCCGCTCGTCTCCGACGACTGA

Peptide Sequence

PEP ID

Zm00001d000060_P001
PEP Infomation

pep contig:B73_RefGen_v4:B73V4_ctg10:292300:293833:1 gene:Zm00001d000060 transcript:Zm00001d000060_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:NAD(P)-linked oxidoreductase superfamily protein
Sequence

MAAGGADQRGNNAATTTFVVPAVALSLGKPMPRVGFGTATATLGQAEGRAGVTEAILRAL
DAGYRHFDTAAVYNTEASLGDAVVEAVRAGTVASRDDLYVTSKLWITDAHPGRVLPALHR
TLQNLQMSYVDLFLIHHPVSMRAPADDEAEGAGPAVVVKKDLVAMDMEGVWEEMEECHRR
GLARAIGVSNFSCKKLEHLLSVAKIPPAVNQVEVNPYCRQEKVRNFCRANGIQLCGYSAM
GASGTAWANNSVMDSPVLKQIAHARGKTVAQVCIRWVYEQGDCVIVKSFNQSRMRENLHI
FDWELTDDDHRKISELPESRGNYDFLIHESGPYKTAQELWDGEITAGQSNQTPLVSDD

Transcript Sequence

Transcript ID

Zm00001d000060_T001
Transcript Infomation

cdna contig:B73_RefGen_v4:B73V4_ctg10:292300:293833:1 gene:Zm00001d000060 gene_biotype:protein_coding transcript_biotype:protein_coding description:NAD(P)-linked oxidoreductase superfamily protein
Sequence

AACCACTGCAATCCAACCACATAGATTTTAGCAGGTGTGCAATCCACAAGGAGCTCGTCA
CAGAACACAGTCTAGAACACCACCGTGCAAACGACAGCCTGTAGGAAACCGTCATGGCTG
CCGGCGGTGCCGACCAAAGGGGGAATAATGCTGCGACGACGACTTTTGTGGTGCCAGCGG
TGGCGCTGAGCTTGGGGAAGCCGATGCCGCGGGTGGGCTTCGGCACGGCAACGGCGACGC
TGGGCCAAGCGGAGGGCCGCGCCGGCGTGACGGAGGCGATCCTCCGCGCCCTGGACGCTG
GGTACCGCCACTTTGACACCGCCGCAGTCTACAACACGGAGGCCTCGCTCGGGGACGCGG
TCGTTGAGGCCGTGCGCGCCGGGACTGTCGCCTCCCGTGACGATCTCTACGTCACGTCCA
AGCTCTGGATCACCGACGCGCACCCCGGCCGCGTCCTACCGGCTCTCCACAGGACACTGC
AGAATCTGCAGATGTCGTACGTGGACCTGTTCCTGATTCACCACCCGGTGAGCATGCGGG
CGCCGGCCGACGACGAGGCTGAAGGAGCAGGCCCCGCGGTGGTGGTGAAGAAAGACCTGG
TGGCCATGGACATGGAGGGCGTGTGGGAGGAGATGGAGGAGTGCCACAGGCGAGGGCTGG
CCAGGGCCATCGGCGTCAGCAACTTCAGCTGCAAGAAGCTAGAGCACCTGCTCTCCGTCG
CCAAGATCCCTCCGGCTGTCAACCAGGTGGAGGTGAACCCGTACTGCCGGCAGGAGAAGG
TCAGGAATTTCTGCAGGGCCAATGGTATCCAGCTCTGCGGCTACTCTGCGATGGGTGCGA
GCGGCACAGCGTGGGCCAACAACTCCGTCATGGACTCCCCTGTCCTCAAACAAATCGCCC
ACGCTCGCGGCAAAACCGTCGCCCAGGTGTGCATTAGGTGGGTTTACGAGCAGGGTGACT
GCGTGATCGTCAAGAGCTTTAACCAGAGCAGGATGCGAGAGAACCTCCACATCTTCGACT
GGGAGCTCACCGACGATGACCACCGCAAGATTAGCGAGCTCCCTGAGTCCAGGGGCAACT
ACGATTTCTTGATCCATGAATCTGGGCCGTACAAAACAGCACAAGAGTTATGGGACGGTG
AGATCACAGCCGGCCAATCTAACCAAACGCCGCTCGTCTCCGACGACTGATCATACAGCT
TTGTGATCTCCTTTGTCACGAAGAAGGCCTGGAGTATCTCTCTTTGTCAAGATTCAAATG
GTTAGAATAAAATATTTGTGACACTGTATAGAATGTCAGCGACACGAGAGAAAACATTAC
TTATCTTCAAACATAAAAA