Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d000028_T001
CDS Infomation	cds contig:B73_RefGen_v4:B73V4_ctg182:72804:74351:1 gene:Zm00001d000028 gene_biotype:protein_coding transcript_biotype:protein_coding description:hydroxyproline-rich glycoprotein family protein
Sequence	ATGGCAGCGCAGCAGCAGGCCGCCGCCTCCGTGCTTCAGAGCTTCCCGATCAGGGCGGCC GTGCTCGCGCTCTGCGTCGCGCTGCTGCCGCTGCTGCTCCCCGCGCAGGCGCCTGACGTC GCGGCCGGGGGAGCCGGCCAGGCTTTCCTCGCCAAGGCGTGGGAGCTGCTGCACCTGCTG TTCGTTGGCATCGCCGTCTCGTACGGCCTCTTCAGCCGCAGGAACAGCGCCGACGATGGG CGCGCCGGGGCTGCAGCAGCAGAGAAGGACGATGCCGCGGGGCCCGAACCTGCCAAGGCG GACGCGAGGTACGCGTGGCGGATGTTCAGGGACTCGATCGCGCCGTTCGATGACGACGAC GCCGACGTGCTGGTGCCGGACAGCCCTCCCGGTGGCGGCGGAGGCGGCATGGCGCGCTCG TGGAGCGCGCTGCACCGGCCCGTGGAGCCCGTCGTCGTCGTGTCCACTGGAGGCGGCGGG GTCCGGATCGGGCAGGCCCAGGCCCCGGACGCACAGGCGCCGCTGTCGCTACCCGTCCGG ATGCTGAAGCCGCAGCAGGCACAGGACGCCAGCGCGGCGGGGGCTGGGGCTGGGGCTGTC GACTTCGAGCCGCAGTGTGCGCGGCCGCGCCGGAGTTCTCAGAGCTCGGCGGTCGACTGC GCCCACGACGACGAGACCGTGCTCCCTTCGCCGATACCGTGGCGGTCGCGGTCCGGGAGG CTCGACGCGCGCCGACCCGCGTCGTCGCCGAGCCCCTCGCCGTCCCCCAAGAGGGTGTCC CCGGCGTCGTCCTTGTCCAGGGAGACGCTGGCCAAGGCAAGCGAGGAGGAGTACTACGCC AAGGCCAAGAGGAGGAGCCCGTACAGGTGCTCTTCCATCTCCTCCTCGCCGCCGGCGCCG CCCCCGCCTCCGCCTCCGTTCCTCGTCCACGGTTACCACCCGACGACCGAGCGCCGGTCG GCAGCGCCGAAAAGCTTTAAGGAGGAGCTGCAGCACCACAGCATGAGAGGCCGAGGAGAA GACCACTACTTGCCGAAGACGAGCAGCAACTCTTTCTCCTTGCCAGCGAATCCAAGAAGC TCTTTCTCTTCTAACGGTGGCTCGTCCTCGTCGGTTTCGGTTGGCAAGTCGGTGAGAACG TTCAGGACAAGGGAGCCAGCAGTTTTCCAAGACCAAAGCCAAGAACTGCCCGACGACTCC GGTGATGATCGTGACGCGCTGGACGTGCACGGATCAGAGGAGCCGTACGGCTACAGAGCT TATCAGTCCATTTCCAGGTTCCAGTACGAGAGGTCAGGGAGCGACTCTATCCTGGGCGGT GTGGCAGTCTCGTCGGATGAGAGCGAGAGCAGCGACGACGACGGCGGGGATGACGTCGGC GGTGGCGGGTACTCGACGAGGGAGTCGACGCCGGAGGTGGACGAGAACGAGGTGGACAAG AAGGCGGAGGAGTTCATCGCCCGGTTCAGGGAGCAGATCAGGCGGCAGAGGATCGAGTCC ATAAAGAAGTCCGCGGGGACGCGCGGCGTCAAGCGCCACGGCAAGTAG

Peptide Sequence

PEP ID	Zm00001d000028_P001
PEP Infomation	pep contig:B73_RefGen_v4:B73V4_ctg182:72804:74351:1 gene:Zm00001d000028 transcript:Zm00001d000028_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:hydroxyproline-rich glycoprotein family protein
Sequence	MAAQQQAAASVLQSFPIRAAVLALCVALLPLLLPAQAPDVAAGGAGQAFLAKAWELLHLL FVGIAVSYGLFSRRNSADDGRAGAAAAEKDDAAGPEPAKADARYAWRMFRDSIAPFDDDD ADVLVPDSPPGGGGGGMARSWSALHRPVEPVVVVSTGGGGVRIGQAQAPDAQAPLSLPVR MLKPQQAQDASAAGAGAGAVDFEPQCARPRRSSQSSAVDCAHDDETVLPSPIPWRSRSGR LDARRPASSPSPSPSPKRVSPASSLSRETLAKASEEEYYAKAKRRSPYRCSSISSSPPAP PPPPPPFLVHGYHPTTERRSAAPKSFKEELQHHSMRGRGEDHYLPKTSSNSFSLPANPRS SFSSNGGSSSSVSVGKSVRTFRTREPAVFQDQSQELPDDSGDDRDALDVHGSEEPYGYRA YQSISRFQYERSGSDSILGGVAVSSDESESSDDDGGDDVGGGGYSTRESTPEVDENEVDK KAEEFIARFREQIRRQRIESIKKSAGTRGVKRHGK

Transcript Sequence

Transcript ID	Zm00001d000028_T001
Transcript Infomation	cdna contig:B73_RefGen_v4:B73V4_ctg182:72804:74351:1 gene:Zm00001d000028 gene_biotype:protein_coding transcript_biotype:protein_coding description:hydroxyproline-rich glycoprotein family protein
Sequence	ATGGCAGCGCAGCAGCAGGCCGCCGCCTCCGTGCTTCAGAGCTTCCCGATCAGGGCGGCC GTGCTCGCGCTCTGCGTCGCGCTGCTGCCGCTGCTGCTCCCCGCGCAGGCGCCTGACGTC GCGGCCGGGGGAGCCGGCCAGGCTTTCCTCGCCAAGGCGTGGGAGCTGCTGCACCTGCTG TTCGTTGGCATCGCCGTCTCGTACGGCCTCTTCAGCCGCAGGAACAGCGCCGACGATGGG CGCGCCGGGGCTGCAGCAGCAGAGAAGGACGATGCCGCGGGGCCCGAACCTGCCAAGGCG GACGCGAGGTACGCGTGGCGGATGTTCAGGGACTCGATCGCGCCGTTCGATGACGACGAC GCCGACGTGCTGGTGCCGGACAGCCCTCCCGGTGGCGGCGGAGGCGGCATGGCGCGCTCG TGGAGCGCGCTGCACCGGCCCGTGGAGCCCGTCGTCGTCGTGTCCACTGGAGGCGGCGGG GTCCGGATCGGGCAGGCCCAGGCCCCGGACGCACAGGCGCCGCTGTCGCTACCCGTCCGG ATGCTGAAGCCGCAGCAGGCACAGGACGCCAGCGCGGCGGGGGCTGGGGCTGGGGCTGTC GACTTCGAGCCGCAGTGTGCGCGGCCGCGCCGGAGTTCTCAGAGCTCGGCGGTCGACTGC GCCCACGACGACGAGACCGTGCTCCCTTCGCCGATACCGTGGCGGTCGCGGTCCGGGAGG CTCGACGCGCGCCGACCCGCGTCGTCGCCGAGCCCCTCGCCGTCCCCCAAGAGGGTGTCC CCGGCGTCGTCCTTGTCCAGGGAGACGCTGGCCAAGGCAAGCGAGGAGGAGTACTACGCC AAGGCCAAGAGGAGGAGCCCGTACAGGTGCTCTTCCATCTCCTCCTCGCCGCCGGCGCCG CCCCCGCCTCCGCCTCCGTTCCTCGTCCACGGTTACCACCCGACGACCGAGCGCCGGTCG GCAGCGCCGAAAAGCTTTAAGGAGGAGCTGCAGCACCACAGCATGAGAGGCCGAGGAGAA GACCACTACTTGCCGAAGACGAGCAGCAACTCTTTCTCCTTGCCAGCGAATCCAAGAAGC TCTTTCTCTTCTAACGGTGGCTCGTCCTCGTCGGTTTCGGTTGGCAAGTCGGTGAGAACG TTCAGGACAAGGGAGCCAGCAGTTTTCCAAGACCAAAGCCAAGAACTGCCCGACGACTCC GGTGATGATCGTGACGCGCTGGACGTGCACGGATCAGAGGAGCCGTACGGCTACAGAGCT TATCAGTCCATTTCCAGGTTCCAGTACGAGAGGTCAGGGAGCGACTCTATCCTGGGCGGT GTGGCAGTCTCGTCGGATGAGAGCGAGAGCAGCGACGACGACGGCGGGGATGACGTCGGC GGTGGCGGGTACTCGACGAGGGAGTCGACGCCGGAGGTGGACGAGAACGAGGTGGACAAG AAGGCGGAGGAGTTCATCGCCCGGTTCAGGGAGCAGATCAGGCGGCAGAGGATCGAGTCC ATAAAGAAGTCCGCGGGGACGCGCGGCGTCAAGCGCCACGGCAAGTAG