Plant GARDEN
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d000023_T014
CDS Infomation

cds contig:B73_RefGen_v4:B73V4_ctg150:1551546:1563274:-1 gene:Zm00001d000023 gene_biotype:protein_coding transcript_biotype:protein_coding description:Polyadenylation and cleavage factor homolog 5
Sequence

ATGGCTGGGGCAGCGGCGTCCCCCGTGGCGGCCCACGTGGTGGAACGGTTCCGCTCGCGG
CTGCGCGAGGAAGCGGGCAGCGGGGAGCCGGGCGCCTCCGCGGTCGTGCGCTTGTACGCG
GAGGCGCTCCGCGAGCTTACCTTCAACTGCAAGCCGGTCATCACCGAGCTCACCATCGTC
GCAGGCCAGCACGCCGCGCTCGCCGCCGGGGGAATCGCCGGCGCCGTCTGCGCCCGCGTC
GCCGAGGTGCCACCTGATCAGATATTACCATCTTTGTATCTGCTAGATAGTATTGTGAAG
AACATAGGTGGGGAATATGTAGAGCATTTTGCAATTAGGTTGCAAAGTGTATTTGTTGAT
GCATACTACAGAGTTCATCCAAACCAGTATGCTTCAATGAGGCGCCTCTTTCGTACCTGG
TGGCCAGTGTTTCCTTCTTCTGTGCTTCACAGCATTGAGGATGACCTTCAATTTTCGCCC
TCAGAGAATAACCGTCCCACCACATCGACAAATGTGCATCAAACAGAGTCGTTATCTCCT
AGACCATCTCATGGCATACATGTAAATCCTAAATACCTAGAAGCACAACATAAGTTCAAG
CGGGTCAATGTGGCGCACCAGTCAGCAGCTCAGGACACTAGGCAAATGTCTGATGTGCAG
GAGGATCTGATAAATGGACTAACATCGAATAGTTCACAAGGACGGCCTTCAGTGTTTCAG
AAATCTTCTTTACAGTATGCTGATGATCCTGGTCAACAAGAGATGTTTCGACCTCTTGCT
GGAGCAATAAGGGCAACATCGCCACATCTCTTGAGAACACATGCATCTGATGTGAATCTA
GATGGGCCATTAGCCAATTCAAGGAGAAACTTGTCCAGATCACCACCTCTTGATGTGTTC
CCTAGGAATGTTTCCCCAAAGAGACCACTAGAGAGGCTACCACCATCTCATTCTGTATTG
GGACCTGATCCCAGAAAATTGCCTGATCGAAATGGCAGGTTAAGGTGGGCTTTGGACGAT
GGTGCACAGTGGCCTACAATAAGTATGCTTGATGAAGAGTACAGGAAGCAAAGTGCAAGG
GAACTTATTGATGCATATGGAAATTGTCAAGGACGAGATGCTGATGAACGACTTCCTAAA
GTACAGCGCCTGGATTCAAATGGTATGACTAGCAAATCTGGTGCACGAAATTGGTTAACT
TCAGAGGAAGAGTATTCATGGGAGGATATGAGTCCAACTTTGACTGATCGAGTCAGAAGC
AGCATGCCATCTTTTCCTCCTGGAACCATGAGAATTGGATTTCCTGGGGCAAATGCAGGG
CTACTGGAATCTGATGTTGGGAGGCACAATTTCCTAAGCCAAGCTACTAGATCATCAGTT
GATGTTTCACCATTTAATATTGAAGATAGGATTTCAGCTGCAAGTCATGTTGACATTTCC
ACAAGGAGATATCCAAGCAATTTTGGTGTTCAGAATGGAGCTCTTTTGGAGTACCAGAAT
TCTGAACATACTCTAAATCATGGGAGAATTGCTACCATGCCAGCTCCACCTTGGCAACAG
CCTATTGGTCTTCCATTGCGAATACAAGGACCTGAACATCCTTCAGTACTTGGTAGAATA
CCACAGCCTGTCGACGGTGAAATGCCAGTCAAGAGGTTGGACATTAGTGGCACGTACAAT
GGTTTGAATGTAGATAAACCCTTGGTGAAGCATAGGTCATCACCTGCTCCTGCCCCGACA
GAATGGCTCCCCCTTCACCATGCCCAATCACAAACTTTACCACTAATTCCACCTGATACC
AAACATGTTAGAAGTGCATCAGATAGTTTAGAAATTAGTTCTTTTGTTAGCCATGGAGGT
AGTTCATCAGTATTTGTTCCACGGCATCAGTATGATGCCGTGGATCGGAAAACAGGTACC
AGTAACTTAGCTCAACCACCATCACCATATCAGAACCAAGATTTGTTGCCATCAAGTCAA
CAAAATCAAGGTACAATTTTGGGAAACCAAGCTCATCCTCATCGTCCCCTAAAGTTACAT
CCCCATGCTCATCCTCACCATCAGGAGACCTTTAGAAGCTTTGCACCTGGCATGTCTGTA
TCTCCATTCCAAGGACAAGGAGGTAATGCAACCATGACACCAGTTTCTGTTCTGCCAACG
TCTTTTTCTGTACCTCCTGCTGTGCCACCCTATGGCGTGCTGTCTGCACCTGGGTTTCCT
ATGCCACCATTACCGCCTGGACCACCAGCACCTGTCTCACTGCAGATGGGTTCATCATCA
TCACAAGTTGGTGGCCCCCAACCATTTGTCTCTGGACTGTTGAGTAACCTTATGCGGCAC
GGTGTAATTTCACTGGAACCACCTAGTCAATCCCAGAATCGTAAGAAATCTTCACGTAAA
TATTTTGTCACCGCTGTTGAATGGTTAAGAGCAGCAGAAACAGTAGGAAACGATGGAGTT
CCTGCTTTTGTGCTCTCAGACCCAGTCCCAGACAGACAGGAAGAGAAAGAAATTGCTGTT
CCTGCGGATGAGGAGCAAACATCCTGTGCATTATGTCAAGAGCCATTTGAAGATTTCTAC
AGTGATGAGACTGACGAGTGGATGTACAGAGGTGCAGTTTATATGAATGCACCAGATGGT
AATATCGATGGTTTGGAATGGTCACAGTTGGGACCTATTGTCCATGCTAAATGTCGATCT
GGGCCCGGCAATACTTCTTAG

Peptide Sequence

PEP ID

Zm00001d000023_P014
PEP Infomation

pep contig:B73_RefGen_v4:B73V4_ctg150:1551546:1563274:-1 gene:Zm00001d000023 transcript:Zm00001d000023_T014 gene_biotype:protein_coding transcript_biotype:protein_coding description:Polyadenylation and cleavage factor homolog 5
Sequence

MAGAAASPVAAHVVERFRSRLREEAGSGEPGASAVVRLYAEALRELTFNCKPVITELTIV
AGQHAALAAGGIAGAVCARVAEVPPDQILPSLYLLDSIVKNIGGEYVEHFAIRLQSVFVD
AYYRVHPNQYASMRRLFRTWWPVFPSSVLHSIEDDLQFSPSENNRPTTSTNVHQTESLSP
RPSHGIHVNPKYLEAQHKFKRVNVAHQSAAQDTRQMSDVQEDLINGLTSNSSQGRPSVFQ
KSSLQYADDPGQQEMFRPLAGAIRATSPHLLRTHASDVNLDGPLANSRRNLSRSPPLDVF
PRNVSPKRPLERLPPSHSVLGPDPRKLPDRNGRLRWALDDGAQWPTISMLDEEYRKQSAR
ELIDAYGNCQGRDADERLPKVQRLDSNGMTSKSGARNWLTSEEEYSWEDMSPTLTDRVRS
SMPSFPPGTMRIGFPGANAGLLESDVGRHNFLSQATRSSVDVSPFNIEDRISAASHVDIS
TRRYPSNFGVQNGALLEYQNSEHTLNHGRIATMPAPPWQQPIGLPLRIQGPEHPSVLGRI
PQPVDGEMPVKRLDISGTYNGLNVDKPLVKHRSSPAPAPTEWLPLHHAQSQTLPLIPPDT
KHVRSASDSLEISSFVSHGGSSSVFVPRHQYDAVDRKTGTSNLAQPPSPYQNQDLLPSSQ
QNQGTILGNQAHPHRPLKLHPHAHPHHQETFRSFAPGMSVSPFQGQGGNATMTPVSVLPT
SFSVPPAVPPYGVLSAPGFPMPPLPPGPPAPVSLQMGSSSSQVGGPQPFVSGLLSNLMRH
GVISLEPPSQSQNRKKSSRKYFVTAVEWLRAAETVGNDGVPAFVLSDPVPDRQEEKEIAV
PADEEQTSCALCQEPFEDFYSDETDEWMYRGAVYMNAPDGNIDGLEWSQLGPIVHAKCRS
GPGNTS

Transcript Sequence

Transcript ID

Zm00001d000023_T014
Transcript Infomation

cdna contig:B73_RefGen_v4:B73V4_ctg150:1551546:1563274:-1 gene:Zm00001d000023 gene_biotype:protein_coding transcript_biotype:protein_coding description:Polyadenylation and cleavage factor homolog 5
Sequence

TCTCCCAATTTCAGTCAGTTCGCTCCGCTCCCACATGCCTCCTCCGCCTCCCTCTCGCCG
TCCCGGCATACCCAATCCCTAGGCACCCCGCCGAAACCCTAGATTCTCCTCTCCTGCTCC
GATGGCTGGGGCAGCGGCGTCCCCCGTGGCGGCCCACGTGGTGGAACGGTTCCGCTCGCG
GCTGCGCGAGGAAGCGGGCAGCGGGGAGCCGGGCGCCTCCGCGGTCGTGCGCTTGTACGC
GGAGGCGCTCCGCGAGCTTACCTTCAACTGCAAGCCGGTCATCACCGAGCTCACCATCGT
CGCAGGCCAGCACGCCGCGCTCGCCGCCGGGGGAATCGCCGGCGCCGTCTGCGCCCGCGT
CGCCGAGGTGCCACCTGATCAGATATTACCATCTTTGTATCTGCTAGATAGTATTGTGAA
GAACATAGGTGGGGAATATGTAGAGCATTTTGCAATTAGGTTGCAAAGTGTATTTGTTGA
TGCATACTACAGAGTTCATCCAAACCAGTATGCTTCAATGAGGCGCCTCTTTCGTACCTG
GTGGCCAGTGTTTCCTTCTTCTGTGCTTCACAGCATTGAGGATGACCTTCAATTTTCGCC
CTCAGAGAATAACCGTCCCACCACATCGACAAATGTGCATCAAACAGAGTCGTTATCTCC
TAGACCATCTCATGGCATACATGTAAATCCTAAATACCTAGAAGCACAACATAAGTTCAA
GCGGGTCAATGTGGCGCACCAGTCAGCAGCTCAGGACACTAGGCAAATGTCTGATGTGCA
GGAGGATCTGATAAATGGACTAACATCGAATAGTTCACAAGGACGGCCTTCAGTGTTTCA
GAAATCTTCTTTACAGTATGCTGATGATCCTGGTCAACAAGAGATGTTTCGACCTCTTGC
TGGAGCAATAAGGGCAACATCGCCACATCTCTTGAGAACACATGCATCTGATGTGAATCT
AGATGGGCCATTAGCCAATTCAAGGAGAAACTTGTCCAGATCACCACCTCTTGATGTGTT
CCCTAGGAATGTTTCCCCAAAGAGACCACTAGAGAGGCTACCACCATCTCATTCTGTATT
GGGACCTGATCCCAGAAAATTGCCTGATCGAAATGGCAGGTTAAGGTGGGCTTTGGACGA
TGGTGCACAGTGGCCTACAATAAGTATGCTTGATGAAGAGTACAGGAAGCAAAGTGCAAG
GGAACTTATTGATGCATATGGAAATTGTCAAGGACGAGATGCTGATGAACGACTTCCTAA
AGTACAGCGCCTGGATTCAAATGGTATGACTAGCAAATCTGGTGCACGAAATTGGTTAAC
TTCAGAGGAAGAGTATTCATGGGAGGATATGAGTCCAACTTTGACTGATCGAGTCAGAAG
CAGCATGCCATCTTTTCCTCCTGGAACCATGAGAATTGGATTTCCTGGGGCAAATGCAGG
GCTACTGGAATCTGATGTTGGGAGGCACAATTTCCTAAGCCAAGCTACTAGATCATCAGT
TGATGTTTCACCATTTAATATTGAAGATAGGATTTCAGCTGCAAGTCATGTTGACATTTC
CACAAGGAGATATCCAAGCAATTTTGGTGTTCAGAATGGAGCTCTTTTGGAGTACCAGAA
TTCTGAACATACTCTAAATCATGGGAGAATTGCTACCATGCCAGCTCCACCTTGGCAACA
GCCTATTGGTCTTCCATTGCGAATACAAGGACCTGAACATCCTTCAGTACTTGGTAGAAT
ACCACAGCCTGTCGACGGTGAAATGCCAGTCAAGAGGTTGGACATTAGTGGCACGTACAA
TGGTTTGAATGTAGATAAACCCTTGGTGAAGCATAGGTCATCACCTGCTCCTGCCCCGAC
AGAATGGCTCCCCCTTCACCATGCCCAATCACAAACTTTACCACTAATTCCACCTGATAC
CAAACATGTTAGAAGTGCATCAGATAGTTTAGAAATTAGTTCTTTTGTTAGCCATGGAGG
TAGTTCATCAGTATTTGTTCCACGGCATCAGTATGATGCCGTGGATCGGAAAACAGGTAC
CAGTAACTTAGCTCAACCACCATCACCATATCAGAACCAAGATTTGTTGCCATCAAGTCA
ACAAAATCAAGGTACAATTTTGGGAAACCAAGCTCATCCTCATCGTCCCCTAAAGTTACA
TCCCCATGCTCATCCTCACCATCAGGAGACCTTTAGAAGCTTTGCACCTGGCATGTCTGT
ATCTCCATTCCAAGGACAAGGAGGTAATGCAACCATGACACCAGTTTCTGTTCTGCCAAC
GTCTTTTTCTGTACCTCCTGCTGTGCCACCCTATGGCGTGCTGTCTGCACCTGGGTTTCC
TATGCCACCATTACCGCCTGGACCACCAGCACCTGTCTCACTGCAGATGGGTTCATCATC
ATCACAAGTTGGTGGCCCCCAACCATTTGTCTCTGGACTGTTGAGTAACCTTATGCGGCA
CGGTGTAATTTCACTGGAACCACCTAGTCAATCCCAGAATCGTAAGAAATCTTCACGTAA
ATATTTTGTCACCGCTGTTGAATGGTTAAGAGCAGCAGAAACAGTAGGAAACGATGGAGT
TCCTGCTTTTGTGCTCTCAGACCCAGTCCCAGACAGACAGGAAGAGAAAGAAATTGCTGT
TCCTGCGGATGAGGAGCAAACATCCTGTGCATTATGTCAAGAGCCATTTGAAGATTTCTA
CAGTGATGAGACTGACGAGTGGATGTACAGAGGTGCAGTTTATATGAATGCACCAGATGG
TAATATCGATGGTTTGGAATGGTCACAGTTGGGACCTATTGTCCATGCTAAATGTCGATC
TGGGCCCGGCAATACTTCTTAG