Plant GARDEN
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TOP > About the Species(Solanum tuberosum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum tuberosum

CDS Sequence

CDS ID

PGSC0003DMT400055512
CDS Infomation

pacid=37457793 polypeptide=PGSC0003DMP400037372 locus=PGSC0003DMG400021555 ID=PGSC0003DMT400055512.v4.03 annot-version=v4.03
Sequence

ATGGCGAATCATCACCAAAAACCTCATGCTATTATGATTCCATATCCATATCAAGGTCAC
ATTACCCCTTTTGTGTATTTAGCTATAAAATTAGCTTCACATGGTTTCACAATCACTTTT
GTAAACACTCATTATATCCATTCTAAGATTTCCAATTCTCAATCTAGAGAAAATTCTCAA
ATAAAAAACAAAGATGATCTGTTTGCTAGAGCTCGTGAATCTGGGCTTGATATTCGTTAT
GCGACTGTGAATGATGGGTTTCCTTTAGGGTTTGATAGGTCATTGAATCATGACCAATTT
GTTGAGGGTTTGTTGCACGTTTTTTCGGCGCATTTTGATGAATTGGTTGGGGATTTGGTG
AAATCGGATCCGCCGGTGACGTGTTTGATCGCTGATACATTTTATGTATGGCCGGCGATG
ATTGCCGACAAGTATAATTTGGTTTATGTTTCGTTTTGGACGGAACCTGCTCTGGTTTTT
AATCTGTATTATCATATGGAATTGCTCAAGAAAAATGGACATTTTGCTTCTCAAGATAAT
CGAAAGGATACTATAGACTACATACCAGGAGTTAAAGCTATTGAACCAAGAGACTTGATG
TCTTATCTCCAAGCAACTGATATTTGGACTGTGGTGCATAGGGTAATCTACAAGGCCTTT
ACAGATATTAAAAAGGCTGATATCATCATTTGTAACACAGTCCAAGAACTTGAATTTGAT
ACCCTCTCAGCCCTAAACAAAAACCAGCCCACATATGCTATTGGTCCCATTTTCCCATCT
GGGAATTTCACTAAGGCCCCATTCAGTATTAGCCTATGGTCTGAGTCTGATTGCTCTCAA
TGGCTCAACAACAAGCCCAATTCCTCAGTGTTGTATGTCTCATTTGGGAGCTATGCTCAC
ACTAGTAAAGAAGACCTATTGGAGATAGCCCATGGGCTTCAACTTAGTGGGGTGAACTTC
ATTTGGGTCCTAAGGCCTGATATCGTTAGCTCGGATGAGACGGATTTCCTGCCTGTGGGG
TTCGAGGAAAGTATAAAAGATCGAGGGTTGATCGTGCCATGGTGTAGACAGATTGAAGTG
ATATCACACCCTGCGACTGGTGGATTCCTAACTCACTGTGGATGGAACTCTACATTGGAA
AGCATATGGTGTGGTATACCGTTGATTTGTTTTCCCTTGCTGACTGATCAATTCACTAAC
CGAAAACTAGTTGTAAATGATTGGAAGATCGGAATTAACCTGTGTGACAAAGAACGCGTT
ACACACGAGGAAGTAGCCGAAAAGGTTAGCCATTTTATGTGTGGGAATAGTACTCAAGAG
TTGAGAAAAGCAGTGAAGGAAGTGAGGAAGACATTAGAGAATGCATTAGGACAAGATGGA
TCATCTGAGAAGAATTTTCATCAATTCATGGAAAACATAAAGGTCAATGCAAGGAAACGG
GCCGGGCTTTCGAATGGGCATGTTAGTCCATTACACCAAAATGGTAATGGGTTGGTCCAT
TGA

Peptide Sequence

PEP ID

PGSC0003DMP400037372
PEP Infomation

pacid=37457793 transcript=PGSC0003DMT400055512 locus=PGSC0003DMG400021555 ID=PGSC0003DMT400055512.v4.03 annot-version=v4.03
Sequence

MANHHQKPHAIMIPYPYQGHITPFVYLAIKLASHGFTITFVNTHYIHSKISNSQSRENSQ
IKNKDDLFARARESGLDIRYATVNDGFPLGFDRSLNHDQFVEGLLHVFSAHFDELVGDLV
KSDPPVTCLIADTFYVWPAMIADKYNLVYVSFWTEPALVFNLYYHMELLKKNGHFASQDN
RKDTIDYIPGVKAIEPRDLMSYLQATDIWTVVHRVIYKAFTDIKKADIIICNTVQELEFD
TLSALNKNQPTYAIGPIFPSGNFTKAPFSISLWSESDCSQWLNNKPNSSVLYVSFGSYAH
TSKEDLLEIAHGLQLSGVNFIWVLRPDIVSSDETDFLPVGFEESIKDRGLIVPWCRQIEV
ISHPATGGFLTHCGWNSTLESIWCGIPLICFPLLTDQFTNRKLVVNDWKIGINLCDKERV
THEEVAEKVSHFMCGNSTQELRKAVKEVRKTLENALGQDGSSEKNFHQFMENIKVNARKR
AGLSNGHVSPLHQNGNGLVH*

Transcript Sequence

Transcript ID

PGSC0003DMT400055512
Transcript Infomation

pacid=37457793 locus=PGSC0003DMG400021555 ID=PGSC0003DMT400055512.v4.03 annot-version=v4.03
Sequence

ATGGCGAATCATCACCAAAAACCTCATGCTATTATGATTCCATATCCATATCAAGGTCAC
ATTACCCCTTTTGTGTATTTAGCTATAAAATTAGCTTCACATGGTTTCACAATCACTTTT
GTAAACACTCATTATATCCATTCTAAGATTTCCAATTCTCAATCTAGAGAAAATTCTCAA
ATAAAAAACAAAGATGATCTGTTTGCTAGAGCTCGTGAATCTGGGCTTGATATTCGTTAT
GCGACTGTGAATGATGGGTTTCCTTTAGGGTTTGATAGGTCATTGAATCATGACCAATTT
GTTGAGGGTTTGTTGCACGTTTTTTCGGCGCATTTTGATGAATTGGTTGGGGATTTGGTG
AAATCGGATCCGCCGGTGACGTGTTTGATCGCTGATACATTTTATGTATGGCCGGCGATG
ATTGCCGACAAGTATAATTTGGTTTATGTTTCGTTTTGGACGGAACCTGCTCTGGTTTTT
AATCTGTATTATCATATGGAATTGCTCAAGAAAAATGGACATTTTGCTTCTCAAGATAAT
CGAAAGGATACTATAGACTACATACCAGGAGTTAAAGCTATTGAACCAAGAGACTTGATG
TCTTATCTCCAAGCAACTGATATTTGGACTGTGGTGCATAGGGTAATCTACAAGGCCTTT
ACAGATATTAAAAAGGCTGATATCATCATTTGTAACACAGTCCAAGAACTTGAATTTGAT
ACCCTCTCAGCCCTAAACAAAAACCAGCCCACATATGCTATTGGTCCCATTTTCCCATCT
GGGAATTTCACTAAGGCCCCATTCAGTATTAGCCTATGGTCTGAGTCTGATTGCTCTCAA
TGGCTCAACAACAAGCCCAATTCCTCAGTGTTGTATGTCTCATTTGGGAGCTATGCTCAC
ACTAGTAAAGAAGACCTATTGGAGATAGCCCATGGGCTTCAACTTAGTGGGGTGAACTTC
ATTTGGGTCCTAAGGCCTGATATCGTTAGCTCGGATGAGACGGATTTCCTGCCTGTGGGG
TTCGAGGAAAGTATAAAAGATCGAGGGTTGATCGTGCCATGGTGTAGACAGATTGAAGTG
ATATCACACCCTGCGACTGGTGGATTCCTAACTCACTGTGGATGGAACTCTACATTGGAA
AGCATATGGTGTGGTATACCGTTGATTTGTTTTCCCTTGCTGACTGATCAATTCACTAAC
CGAAAACTAGTTGTAAATGATTGGAAGATCGGAATTAACCTGTGTGACAAAGAACGCGTT
ACACACGAGGAAGTAGCCGAAAAGGTTAGCCATTTTATGTGTGGGAATAGTACTCAAGAG
TTGAGAAAAGCAGTGAAGGAAGTGAGGAAGACATTAGAGAATGCATTAGGACAAGATGGA
TCATCTGAGAAGAATTTTCATCAATTCATGGAAAACATAAAGGTCAATGCAAGGAAACGG
GCCGGGCTTTCGAATGGGCATGTTAGTCCATTACACCAAAATGGTAATGGGTTGGTCCAT
TGA