Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum tuberosum

CDS Sequence

CDS ID

PGSC0003DMT400024321
CDS Infomation

pacid=37433024 polypeptide=PGSC0003DMP400016623 locus=PGSC0003DMG400009402 ID=PGSC0003DMT400024321.v4.03 annot-version=v4.03
Sequence

ATGGTCGGTCCATTGATTCGATCTCTCTGGTCTACAACTAGGAGATCCTTCTCCTCCTCT
CATTATTCTCATATCAAACCTTTATCCTATGCTCGAGCTTTCTCCACCGCCACAGCTACC
GCTCCCGTTGGCTCCGCCGCCACTGCACCCGGCGGCGCTCTGGATCCCGACCGGCTAAGG
AATGTCGCGGTTATAGCTCACGTCGATCATGGAAAGACTACTCTCATGGATAGGCTGCTT
CGTCAGTGCGGCGCTGATATACCTCACGAGCGTGCCTTAGATTCTATCGACCTCGAACGA
GAGCGCGGCATCACTATTGCTTCTAAGGTTACATCCATCTCGTGGAAGGACAAAGAGCTA
AACATGGTGGACACTCCTGGACACGCAGATTTTGGTGGTGAAGTTGAGAGGGTTGTTGGC
ATGGTTGAGGGAGCAGTCCTTGTTGTTGATGCTGGTGAAGGTCCACTTGCACAAACAAAA
TTTGTTCTTGCCAAGGCCCTTAAATATGGTTTACGCCCCATTCTTCTTCTCAATAAAGTA
GACAAACCTGCAGTGACTGAAGAGAGATGTAATGAAGTTGAGAGCCTTGTATTTGATCTT
TTCGCAAACCTTGGTGCTTCAGAGGAACAGTTAGATTTTCCTGTTCTTTACGCTTCAGCT
AAAGAAGGATGGGCATCTTCCACATATACAAAAAGTCCTCCTGATGTGAAGGATATGTCA
CAATTGCTCAATGCTATTGTTGGGCATGTTCCTCCACCGAGTGCTAGCCTAGATGCCCCT
TTTCAGATGTTGGTTTCCATGATGGAGAAAGATCCTTATCTTGGTCGTGTTTTGACGGGT
CGTGTAACTTGTGGAGTTGTTCGTGTTGGTGATAAAGTACAAGGGCTGAAGAACACAGAC
AATGGAACTGTAAAAATTGAAGAAGGAAAGGTTGTAAAGCTGATGAAAAAGAAGGGTATG
AGAGCAGATCCAGTTGATAGTGCTGGTGCAGGTGACATAGTGTCCATGGCAGGTTTGTCA
AGTCCGACAATTGGACACACAGTTGCGAATGCAGAGGTTACGACAGCATTGCCCACAGTT
GTGCTTGACCCCCCTACCATCTCCATGACTTTCGGTGTCAATGATTCTCCCTTAGCTGGT
TCTGATGGTATTCATTTGACTGGAGGGAAAATTGGTGACCGGCTGCTAGCTGAATCAGAA
ACCAATCTTGCCATAAATGTTCTCCCCAGTACGACCGAATCATTTGAAGTGCAGGGTAGA
GGTGAACTTCAATTAGGTATCTTAATTGAGAACATGAGACGTGAAGGATTTGAGCTCTCT
GTCTCCCCACCTAAAGTCATGTACAAAGTAGAGAAAGGTACTAAGCTTGAGCCAATTGAA
GAAGTGACTATTGAGGTTGATGACGAGCACGTAGGTTTGGTCATGGAAGCACTTTCTCAC
AGGCGGGGTGAAGTTACTGACATGGGCCCTGTTCCTGGCAGCATGGGAAGGACTAGAATG
TGTCTGACATGTCCTTCAAGAGGGCTAGTGGGCTATAGAAGTGTGTTCAGCAGTGACACC
CGTGGCTCTGGATTTATGCATCGGGCTTTTCTGACTTATGAAAAATATCGTGGTCCTCTT
GGAAATGTCAGGAAAGGAGTTCTAGTATCAATGGGCCGTGGGTTAATCACTGCTCATGCA
CTGATGGGTTTAGAAGCTCGCGGAGTTCTCTTTGTGGCACCTGCAATGGAGACATATGAT
GGCATGATTATTGGAGAACATTCTCGAGATACAGATCTTGATGTCAACCCGGTTAAGTCA
AAAGAACTCAACAATATAAGGTGCGCTAGCAAGGATGAGAATGTCAAGTTAACTCCTCCC
CGCCTTATGTCTCTCGAAGAAGCCATAGGATATGTTGCTTCCGATGAGCTTATTGAGGTT
ACACCAAAAGCCATTAGGCTAAGAAAGAGATACTTGGAAGTGAACAAGAGAAAATCAATG
AGCAAGAGGCCCAAGGATTGA

Peptide Sequence

PEP ID

PGSC0003DMP400016623
PEP Infomation

pacid=37433024 transcript=PGSC0003DMT400024321 locus=PGSC0003DMG400009402 ID=PGSC0003DMT400024321.v4.03 annot-version=v4.03
Sequence

MVGPLIRSLWSTTRRSFSSSHYSHIKPLSYARAFSTATATAPVGSAATAPGGALDPDRLR
NVAVIAHVDHGKTTLMDRLLRQCGADIPHERALDSIDLERERGITIASKVTSISWKDKEL
NMVDTPGHADFGGEVERVVGMVEGAVLVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKV
DKPAVTEERCNEVESLVFDLFANLGASEEQLDFPVLYASAKEGWASSTYTKSPPDVKDMS
QLLNAIVGHVPPPSASLDAPFQMLVSMMEKDPYLGRVLTGRVTCGVVRVGDKVQGLKNTD
NGTVKIEEGKVVKLMKKKGMRADPVDSAGAGDIVSMAGLSSPTIGHTVANAEVTTALPTV
VLDPPTISMTFGVNDSPLAGSDGIHLTGGKIGDRLLAESETNLAINVLPSTTESFEVQGR
GELQLGILIENMRREGFELSVSPPKVMYKVEKGTKLEPIEEVTIEVDDEHVGLVMEALSH
RRGEVTDMGPVPGSMGRTRMCLTCPSRGLVGYRSVFSSDTRGSGFMHRAFLTYEKYRGPL
GNVRKGVLVSMGRGLITAHALMGLEARGVLFVAPAMETYDGMIIGEHSRDTDLDVNPVKS
KELNNIRCASKDENVKLTPPRLMSLEEAIGYVASDELIEVTPKAIRLRKRYLEVNKRKSM
SKRPKD*

Transcript Sequence

Transcript ID

PGSC0003DMT400024321
Transcript Infomation

pacid=37433024 locus=PGSC0003DMG400009402 ID=PGSC0003DMT400024321.v4.03 annot-version=v4.03
Sequence

ATGGTCGGTCCATTGATTCGATCTCTCTGGTCTACAACTAGGAGATCCTTCTCCTCCTCT
CATTATTCTCATATCAAACCTTTATCCTATGCTCGAGCTTTCTCCACCGCCACAGCTACC
GCTCCCGTTGGCTCCGCCGCCACTGCACCCGGCGGCGCTCTGGATCCCGACCGGCTAAGG
AATGTCGCGGTTATAGCTCACGTCGATCATGGAAAGACTACTCTCATGGATAGGCTGCTT
CGTCAGTGCGGCGCTGATATACCTCACGAGCGTGCCTTAGATTCTATCGACCTCGAACGA
GAGCGCGGCATCACTATTGCTTCTAAGGTTACATCCATCTCGTGGAAGGACAAAGAGCTA
AACATGGTGGACACTCCTGGACACGCAGATTTTGGTGGTGAAGTTGAGAGGGTTGTTGGC
ATGGTTGAGGGAGCAGTCCTTGTTGTTGATGCTGGTGAAGGTCCACTTGCACAAACAAAA
TTTGTTCTTGCCAAGGCCCTTAAATATGGTTTACGCCCCATTCTTCTTCTCAATAAAGTA
GACAAACCTGCAGTGACTGAAGAGAGATGTAATGAAGTTGAGAGCCTTGTATTTGATCTT
TTCGCAAACCTTGGTGCTTCAGAGGAACAGTTAGATTTTCCTGTTCTTTACGCTTCAGCT
AAAGAAGGATGGGCATCTTCCACATATACAAAAAGTCCTCCTGATGTGAAGGATATGTCA
CAATTGCTCAATGCTATTGTTGGGCATGTTCCTCCACCGAGTGCTAGCCTAGATGCCCCT
TTTCAGATGTTGGTTTCCATGATGGAGAAAGATCCTTATCTTGGTCGTGTTTTGACGGGT
CGTGTAACTTGTGGAGTTGTTCGTGTTGGTGATAAAGTACAAGGGCTGAAGAACACAGAC
AATGGAACTGTAAAAATTGAAGAAGGAAAGGTTGTAAAGCTGATGAAAAAGAAGGGTATG
AGAGCAGATCCAGTTGATAGTGCTGGTGCAGGTGACATAGTGTCCATGGCAGGTTTGTCA
AGTCCGACAATTGGACACACAGTTGCGAATGCAGAGGTTACGACAGCATTGCCCACAGTT
GTGCTTGACCCCCCTACCATCTCCATGACTTTCGGTGTCAATGATTCTCCCTTAGCTGGT
TCTGATGGTATTCATTTGACTGGAGGGAAAATTGGTGACCGGCTGCTAGCTGAATCAGAA
ACCAATCTTGCCATAAATGTTCTCCCCAGTACGACCGAATCATTTGAAGTGCAGGGTAGA
GGTGAACTTCAATTAGGTATCTTAATTGAGAACATGAGACGTGAAGGATTTGAGCTCTCT
GTCTCCCCACCTAAAGTCATGTACAAAGTAGAGAAAGGTACTAAGCTTGAGCCAATTGAA
GAAGTGACTATTGAGGTTGATGACGAGCACGTAGGTTTGGTCATGGAAGCACTTTCTCAC
AGGCGGGGTGAAGTTACTGACATGGGCCCTGTTCCTGGCAGCATGGGAAGGACTAGAATG
TGTCTGACATGTCCTTCAAGAGGGCTAGTGGGCTATAGAAGTGTGTTCAGCAGTGACACC
CGTGGCTCTGGATTTATGCATCGGGCTTTTCTGACTTATGAAAAATATCGTGGTCCTCTT
GGAAATGTCAGGAAAGGAGTTCTAGTATCAATGGGCCGTGGGTTAATCACTGCTCATGCA
CTGATGGGTTTAGAAGCTCGCGGAGTTCTCTTTGTGGCACCTGCAATGGAGACATATGAT
GGCATGATTATTGGAGAACATTCTCGAGATACAGATCTTGATGTCAACCCGGTTAAGTCA
AAAGAACTCAACAATATAAGGTGCGCTAGCAAGGATGAGAATGTCAAGTTAACTCCTCCC
CGCCTTATGTCTCTCGAAGAAGCCATAGGATATGTTGCTTCCGATGAGCTTATTGAGGTT
ACACCAAAAGCCATTAGGCTAAGAAAGAGATACTTGGAAGTGAACAAGAGAAAATCAATG
AGCAAGAGGCCCAAGGATTGA