Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum tuberosum

CDS Sequence

CDS ID

PGSC0003DMT400016541
CDS Infomation

pacid=37446949 polypeptide=PGSC0003DMP400011467 locus=PGSC0003DMG400006459 ID=PGSC0003DMT400016541.v4.03 annot-version=v4.03
Sequence

ATGGAAACAGCTGTTATTAACACATTCCCTAGCTTCAAAATACCTCCTTCCTATATCACA
ATGAAAAATTACTTGCTTTTTTATCCTGTAAAGACTGCATTTTTAATTAGTAATTCAAGA
ATTAAGTTATCCTCCAAGTTTCATATATGTTGCTTAGATCCTTCTAGAAGTCACAATTCC
ATAGGAACTAGAACTTTGGTTGAAAATGAAGTAGAAGAAGAAGATGATGATGATGATGAG
GGTTCTACTGATAGTAAAAATCAGGTTAGGGAGGACCCGTCCGAGGTGGACTGGGAAGCA
AAATTCCTTGGAAAGATGGAGCCATCTGGAGATGTTTTACCTGAAAAGAAGAAAAAGAAA
GTAAATTCTAGATTGCTTAAGAATACAGAAACAATGGATTGGTGTATGAATGCTAGGAAA
GTTGCTCTTAAGTCTATTGAAGCTAGAGGATTGACTCCTGTTATAAAGAGTATGGTTAGT
GGAAATAAAAAGACCAAAAAGAAGAAGAAGAAGAAGATTATATCTAAGGTTGATAAGAAA
AGTCCGGATGAAGAAATTGATGGAGAGTTGGAATTTGACTCGGATGATGAGGATTTCGAT
TTGGATGTTGAAGTTCCTCAAGGTAATAGAAGTGACCTTAAAATGACAGTAAGCATGTTT
GCTGATGGTATGTTTGAGGAACAGAAAGCTAAAAACATGGAAACGTTTGTCCAAAGGCTA
TCTGAATTTGCAGGACCATCGGATCGTAAGAAAGAAATTAGCTTGAATAAAGCAATTGTT
GAAGCACTGACAGCTGAAGAAGTGTTAGAAGTCACTTCTGAGACAGTCTCAGCTGTTGCC
AAAGGGCTTACCCCTTCGCCTCTTTCTCCATTAAATATAGCCACATCATTGCATAGGATA
GCGAAGAACATGGAGAAAGTTTCAATGACTAGGAGCAGAAGGTTGGCATTTGCTCGCCAA
AGAGAGATGTGTATGCTTGTAAGCATTGCTATGACTGCTTTGCCTGAGTGCTCAGGACAG
GGTGTTTCAAATATTGCATGGGCACTGTCAAAAATTGGTGGTGAGCTTCTCTATTTGACA
GAAATGGACAGAGTAGCAGAAGTAGCGTCGACTATGGTTGAGGAGTTCAATTCACAAAAT
GTTGCTAATATAGCTGGAGCCTTTGCGTCAATGCAGCACTCTGCTCCGGAACTATTTTCG
AGGTTAGCAAGAAGGGCCTCGGACATAATTCATACTTTTCAGCCTCAAGAGATTGCTCAA
GTCTTGTGGGCTTTTGCTTCTCTGTACGAGCAACCTGGTCCCATGCTTGATGCACTTGAT
AATGTTTTTAGTGATGGTAATCAGTTTAAATGCCGCTTGAAAGATGATAAATTACCTTAT
AGTAAAGACAGAACACCAGATGGTACTGCAGATGTTGATTCTGGAGAAATTAACTCTCCC
GTGCTAAGTTTTAATAGGGATCAGCTAGGTAATATATCATGGTCTTATGCTGTTCTTGGG
CAGATGAATCGAGTTTTCTTCGCCAATGTATGGAATGCTCTCAGCTATTTTGAGGAGCAA
CGGATATCTGAGCAGTATAGAGAAGACATTATGTTTGCTTCCCAAGTTCATCTTGTGAAC
CAATGTCTCAAGCTAGAGTACTCACATCTTGACTTATCCCTGAAAGGTGAACTGGAGGAA
AAAATTTCCAGTGCTGGAAGGACAAAACGGTTCAATCAGAAGGTTACTTCCTCATTTCAG
AAGGAGATTGCTCGCCTTCTTGTAAGCACTGGGCTAGATTGGGTAAGAGAACATGCTGTG
GATGGTTATACCCTGGACGCAGCGGTCATTGACAAAAGAGTTGCTCTTGAGATAGATGGC
CCTACTCATTTCTCAAGGAACTCAGGATCCCCCTTGGGACATACAATGCTAAAGCGGAGA
TTTATCACTGCTGCTGGTTGGAAGCTCGTATCTGTCCCTCATCAGGAATGGGAAGAGCTT
AAAGGAGGGTTTGAGCAGTTAGAGTATCTCCGTGGCATTATCAAAGATCATTTCAATGAA
GGGAGCTTCAATGTGGAAATGGAAGATGGTCATTGA

Peptide Sequence

PEP ID

PGSC0003DMP400011467
PEP Infomation

pacid=37446949 transcript=PGSC0003DMT400016541 locus=PGSC0003DMG400006459 ID=PGSC0003DMT400016541.v4.03 annot-version=v4.03
Sequence

METAVINTFPSFKIPPSYITMKNYLLFYPVKTAFLISNSRIKLSSKFHICCLDPSRSHNS
IGTRTLVENEVEEEDDDDDEGSTDSKNQVREDPSEVDWEAKFLGKMEPSGDVLPEKKKKK
VNSRLLKNTETMDWCMNARKVALKSIEARGLTPVIKSMVSGNKKTKKKKKKKIISKVDKK
SPDEEIDGELEFDSDDEDFDLDVEVPQGNRSDLKMTVSMFADGMFEEQKAKNMETFVQRL
SEFAGPSDRKKEISLNKAIVEALTAEEVLEVTSETVSAVAKGLTPSPLSPLNIATSLHRI
AKNMEKVSMTRSRRLAFARQREMCMLVSIAMTALPECSGQGVSNIAWALSKIGGELLYLT
EMDRVAEVASTMVEEFNSQNVANIAGAFASMQHSAPELFSRLARRASDIIHTFQPQEIAQ
VLWAFASLYEQPGPMLDALDNVFSDGNQFKCRLKDDKLPYSKDRTPDGTADVDSGEINSP
VLSFNRDQLGNISWSYAVLGQMNRVFFANVWNALSYFEEQRISEQYREDIMFASQVHLVN
QCLKLEYSHLDLSLKGELEEKISSAGRTKRFNQKVTSSFQKEIARLLVSTGLDWVREHAV
DGYTLDAAVIDKRVALEIDGPTHFSRNSGSPLGHTMLKRRFITAAGWKLVSVPHQEWEEL
KGGFEQLEYLRGIIKDHFNEGSFNVEMEDGH*

Transcript Sequence

Transcript ID

PGSC0003DMT400016541
Transcript Infomation

pacid=37446949 locus=PGSC0003DMG400006459 ID=PGSC0003DMT400016541.v4.03 annot-version=v4.03
Sequence

ATGGAAACAGCTGTTATTAACACATTCCCTAGCTTCAAAATACCTCCTTCCTATATCACA
ATGAAAAATTACTTGCTTTTTTATCCTGTAAAGACTGCATTTTTAATTAGTAATTCAAGA
ATTAAGTTATCCTCCAAGTTTCATATATGTTGCTTAGATCCTTCTAGAAGTCACAATTCC
ATAGGAACTAGAACTTTGGTTGAAAATGAAGTAGAAGAAGAAGATGATGATGATGATGAG
GGTTCTACTGATAGTAAAAATCAGGTTAGGGAGGACCCGTCCGAGGTGGACTGGGAAGCA
AAATTCCTTGGAAAGATGGAGCCATCTGGAGATGTTTTACCTGAAAAGAAGAAAAAGAAA
GTAAATTCTAGATTGCTTAAGAATACAGAAACAATGGATTGGTGTATGAATGCTAGGAAA
GTTGCTCTTAAGTCTATTGAAGCTAGAGGATTGACTCCTGTTATAAAGAGTATGGTTAGT
GGAAATAAAAAGACCAAAAAGAAGAAGAAGAAGAAGATTATATCTAAGGTTGATAAGAAA
AGTCCGGATGAAGAAATTGATGGAGAGTTGGAATTTGACTCGGATGATGAGGATTTCGAT
TTGGATGTTGAAGTTCCTCAAGGTAATAGAAGTGACCTTAAAATGACAGTAAGCATGTTT
GCTGATGGTATGTTTGAGGAACAGAAAGCTAAAAACATGGAAACGTTTGTCCAAAGGCTA
TCTGAATTTGCAGGACCATCGGATCGTAAGAAAGAAATTAGCTTGAATAAAGCAATTGTT
GAAGCACTGACAGCTGAAGAAGTGTTAGAAGTCACTTCTGAGACAGTCTCAGCTGTTGCC
AAAGGGCTTACCCCTTCGCCTCTTTCTCCATTAAATATAGCCACATCATTGCATAGGATA
GCGAAGAACATGGAGAAAGTTTCAATGACTAGGAGCAGAAGGTTGGCATTTGCTCGCCAA
AGAGAGATGTGTATGCTTGTAAGCATTGCTATGACTGCTTTGCCTGAGTGCTCAGGACAG
GGTGTTTCAAATATTGCATGGGCACTGTCAAAAATTGGTGGTGAGCTTCTCTATTTGACA
GAAATGGACAGAGTAGCAGAAGTAGCGTCGACTATGGTTGAGGAGTTCAATTCACAAAAT
GTTGCTAATATAGCTGGAGCCTTTGCGTCAATGCAGCACTCTGCTCCGGAACTATTTTCG
AGGTTAGCAAGAAGGGCCTCGGACATAATTCATACTTTTCAGCCTCAAGAGATTGCTCAA
GTCTTGTGGGCTTTTGCTTCTCTGTACGAGCAACCTGGTCCCATGCTTGATGCACTTGAT
AATGTTTTTAGTGATGGTAATCAGTTTAAATGCCGCTTGAAAGATGATAAATTACCTTAT
AGTAAAGACAGAACACCAGATGGTACTGCAGATGTTGATTCTGGAGAAATTAACTCTCCC
GTGCTAAGTTTTAATAGGGATCAGCTAGGTAATATATCATGGTCTTATGCTGTTCTTGGG
CAGATGAATCGAGTTTTCTTCGCCAATGTATGGAATGCTCTCAGCTATTTTGAGGAGCAA
CGGATATCTGAGCAGTATAGAGAAGACATTATGTTTGCTTCCCAAGTTCATCTTGTGAAC
CAATGTCTCAAGCTAGAGTACTCACATCTTGACTTATCCCTGAAAGGTGAACTGGAGGAA
AAAATTTCCAGTGCTGGAAGGACAAAACGGTTCAATCAGAAGGTTACTTCCTCATTTCAG
AAGGAGATTGCTCGCCTTCTTGTAAGCACTGGGCTAGATTGGGTAAGAGAACATGCTGTG
GATGGTTATACCCTGGACGCAGCGGTCATTGACAAAAGAGTTGCTCTTGAGATAGATGGC
CCTACTCATTTCTCAAGGAACTCAGGATCCCCCTTGGGACATACAATGCTAAAGCGGAGA
TTTATCACTGCTGCTGGTTGGAAGCTCGTATCTGTCCCTCATCAGGAATGGGAAGAGCTT
AAAGGAGGGTTTGAGCAGTTAGAGTATCTCCGTGGCATTATCAAAGATCATTTCAATGAA
GGGAGCTTCAATGTGGAAATGGAAGATGGTCATTGA