Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Citrus sinensis

CDS Sequence

CDS ID

orange1.1t04056.1
CDS Infomation

gene=orange1.1t04056
Sequence

ATGGGGTTTGTCAGTTGTCACCAGCAGCAACAAACCTTCCTATATAATCTATCCATCTCT
AAACCAGCCGGTGCGGTGCCGACCGTGCTGCCCATCTTGCTTCAGGTCCAGCCACAGGCT
CCAGTGGCGGTTGCAGCCCAACCATCCCCTGCAACCAATGGAATTGCTAACAATGGCGGC
GTTGGTGATGCTCGGCAGTTCGTATCAACTTCGCTTTATGTCGGAGATCTTGACCTTAGC
GTCAACGATTCTCAGCTTTATGACTTGTTTAACCAGATGGGTCAGGTTGTTTCCGTTCGG
GTTTGCAGAGATTTGAGCACCCGACGCTCTCTCGGTTACGGCTATGTCAATTACAACGCC
GCCCACGAAGCAACACGGGCGTTGGATGAATTGAACTTTACTCCTCTGAATGGCAAACCA
ATTAGGATAATGTATTCTTATCGCGACCCTACCATCCGCAAAAGTGGAGCGGGCAATATA
TTTATCAAGAATTTGGACAAGTCAATTGACAACAAAGCTCTACATGACACATTCTCAACA
TTTGGGAATATTTTATCTTGCAAAGTAGCTACTGATTCTTTGGGTCAGTCAAGAGGATAT
GGCTTTGTGCAGTTTGATAACGAGGAGTCCGCTAAAAGTGCCATTGATAAGCTGAATGGT
ATGCTACTGAATGACAAACAAGTATTTGTTGGACCCTTCCTCCGCAAGCAGGAAAGAGAG
TCTACCGCAGATAAGACAAGATTCAACAATGTTTATGTGAAGAATCTTTCGGAAACAACA
ACTGAAGATGACCTCAAGAAAATTTTTGGTGAATTCGGAATTATTACTAGTACTGCAGTC
ATGAGAGATGCAGATGGAAAGTCCAAATGTTTTGGATTTGTCAATTTTGATGATCCTGAT
GATGCAGCTCGATCTGTTGAGGCACTCAATGGAAAGAAGTTTGATGATAAGGAGTGGTAT
GTTGGGAAAGCACAGAAGAAATATGAAAGAGAGATGGAATTGAAAGGAAAGTTTGAGCAG
AGCTTAAAGGAGACAGCTGATAAATTTGAAGGACTAAATTTATATGTTAAGAACCTAGAT
GACAGCATCTCTGATGACAAACTAAAGGAATTATTCTCAGAATTTGGTACAATTACATCA
TGCAAGGTTATGCGTGACCCTAATGGTATAAGTAGAGGATCAGGATTTGTTGCCTTCTCA
ACTGCAGAAGAAGCATCTAAAGCCTTGACAGAGATGAATGGGAAAATGGTAGTTAGCAAA
CCGCTTTATGTTGCTCTTGCTCAGAGAAAAGAAGAAAGAAGAGCGAGGTTGCAGGCACAG
TTCTCACAAATGCGCCCTCCAGTTGGCCCTCGTATGCCCATGTACCCCCCAGTTGCTCCG
GGTCTTGGACAGCAACTATTTTATGGTCAAGGCCCTCCTATCATTCCACCTCAACCTGGG
TTTGGGTACCAGCAGCAGCTGGTTCCTGGAATGAGGCCAAACTATTTTGTTCCAATGGTC
CAGCCAGGTCAGCAGAACCAGCGCCCAGGAGGCAGACGTTCTGGAACTGGCCCCATGCAA
CAAGCACAACAACCAATTCCACTTATGCAGCCGCGGATGCTTCCAAGAGGTCGCATCTAC
CGATACCCTCCTGGTTGCAACATACCAGATGTTCCCGTTGCTGGTGTTCCTGGAGGCATG
CTTCCTGGTCCTTATGACATTGGTGGAATGCCGTTCAGAGATGCTGCATTTTCACAGCCT
ATGCAAACAGGGGCTTTGGCGTCTGCCCTTGCTAATGCGTCTCCTGAGCAACAGAGGACG
TTACTGGGAGAAAATCTGTACCCACTTGTAGATCAATTGGAGCATGATAACGCTGCAAAA
GTAACAGGCATGCTTTTAGAGATGGACCAGACTGAAGTTTTGCACTTGCTAGAGTCGCCA
GAAGCCTTGAAAGCGAAAGTCGCAGAGGCAATGGAAGTATTAAGGAATGTAGCTCAGCAG
CAGGCCACCGGCCCAAGCCCAACTGATCGGGTGGCCTCACTGTCGCTGAATGACAACATT
GTTTCTTGA

Peptide Sequence

PEP ID

orange1.1t04056.1
PEP Infomation
Sequence

MGFVSCHQQQQTFLYNLSISKPAGAVPTVLPILLQVQPQAPVAVAAQPSPATNGIANNGG
VGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNA
AHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFST
FGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERE
STADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPD
DAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLD
DSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSK
PLYVALAQRKEERRARLQAQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPG
FGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIY
RYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRT
LLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQ
QATGPSPTDRVASLSLNDNIVS*

Transcript Sequence

Transcript ID

orange1.1t04056.1
Transcript Infomation

gene=orange1.1t04056 CDS=1-2049
Sequence

ATGGGGTTTGTCAGTTGTCACCAGCAGCAACAAACCTTCCTATATAATCTATCCATCTCT
AAACCAGCCGGTGCGGTGCCGACCGTGCTGCCCATCTTGCTTCAGGTCCAGCCACAGGCT
CCAGTGGCGGTTGCAGCCCAACCATCCCCTGCAACCAATGGAATTGCTAACAATGGCGGC
GTTGGTGATGCTCGGCAGTTCGTATCAACTTCGCTTTATGTCGGAGATCTTGACCTTAGC
GTCAACGATTCTCAGCTTTATGACTTGTTTAACCAGATGGGTCAGGTTGTTTCCGTTCGG
GTTTGCAGAGATTTGAGCACCCGACGCTCTCTCGGTTACGGCTATGTCAATTACAACGCC
GCCCACGAAGCAACACGGGCGTTGGATGAATTGAACTTTACTCCTCTGAATGGCAAACCA
ATTAGGATAATGTATTCTTATCGCGACCCTACCATCCGCAAAAGTGGAGCGGGCAATATA
TTTATCAAGAATTTGGACAAGTCAATTGACAACAAAGCTCTACATGACACATTCTCAACA
TTTGGGAATATTTTATCTTGCAAAGTAGCTACTGATTCTTTGGGTCAGTCAAGAGGATAT
GGCTTTGTGCAGTTTGATAACGAGGAGTCCGCTAAAAGTGCCATTGATAAGCTGAATGGT
ATGCTACTGAATGACAAACAAGTATTTGTTGGACCCTTCCTCCGCAAGCAGGAAAGAGAG
TCTACCGCAGATAAGACAAGATTCAACAATGTTTATGTGAAGAATCTTTCGGAAACAACA
ACTGAAGATGACCTCAAGAAAATTTTTGGTGAATTCGGAATTATTACTAGTACTGCAGTC
ATGAGAGATGCAGATGGAAAGTCCAAATGTTTTGGATTTGTCAATTTTGATGATCCTGAT
GATGCAGCTCGATCTGTTGAGGCACTCAATGGAAAGAAGTTTGATGATAAGGAGTGGTAT
GTTGGGAAAGCACAGAAGAAATATGAAAGAGAGATGGAATTGAAAGGAAAGTTTGAGCAG
AGCTTAAAGGAGACAGCTGATAAATTTGAAGGACTAAATTTATATGTTAAGAACCTAGAT
GACAGCATCTCTGATGACAAACTAAAGGAATTATTCTCAGAATTTGGTACAATTACATCA
TGCAAGGTTATGCGTGACCCTAATGGTATAAGTAGAGGATCAGGATTTGTTGCCTTCTCA
ACTGCAGAAGAAGCATCTAAAGCCTTGACAGAGATGAATGGGAAAATGGTAGTTAGCAAA
CCGCTTTATGTTGCTCTTGCTCAGAGAAAAGAAGAAAGAAGAGCGAGGTTGCAGGCACAG
TTCTCACAAATGCGCCCTCCAGTTGGCCCTCGTATGCCCATGTACCCCCCAGTTGCTCCG
GGTCTTGGACAGCAACTATTTTATGGTCAAGGCCCTCCTATCATTCCACCTCAACCTGGG
TTTGGGTACCAGCAGCAGCTGGTTCCTGGAATGAGGCCAAACTATTTTGTTCCAATGGTC
CAGCCAGGTCAGCAGAACCAGCGCCCAGGAGGCAGACGTTCTGGAACTGGCCCCATGCAA
CAAGCACAACAACCAATTCCACTTATGCAGCCGCGGATGCTTCCAAGAGGTCGCATCTAC
CGATACCCTCCTGGTTGCAACATACCAGATGTTCCCGTTGCTGGTGTTCCTGGAGGCATG
CTTCCTGGTCCTTATGACATTGGTGGAATGCCGTTCAGAGATGCTGCATTTTCACAGCCT
ATGCAAACAGGGGCTTTGGCGTCTGCCCTTGCTAATGCGTCTCCTGAGCAACAGAGGACG
TTACTGGGAGAAAATCTGTACCCACTTGTAGATCAATTGGAGCATGATAACGCTGCAAAA
GTAACAGGCATGCTTTTAGAGATGGACCAGACTGAAGTTTTGCACTTGCTAGAGTCGCCA
GAAGCCTTGAAAGCGAAAGTCGCAGAGGCAATGGAAGTATTAAGGAATGTAGCTCAGCAG
CAGGCCACCGGCCCAAGCCCAACTGATCGGGTGGCCTCACTGTCGCTGAATGACAACATT
GTTTCTTGAGTTTTAGGCACCCATCTATGCTAGTAATATAGCCTAAGCACTTAATTTTGG
AATAAAATTTGGTGTGGGGTTGAGTCTATTTGCGATAGTTTGCTTGAGAAAGTCGGCGGA
ATACTTTGTTACTGAACTTTCTTTGTAGCGCGACCATATAAAGATCAGCGCAATTTTGCC
CAAGTTATGCCAGTATTAATTTAATTTGCTTGATCATC