Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Citrus sinensis

CDS Sequence

CDS ID

orange1.1t04055.1
CDS Infomation

gene=orange1.1t04055
Sequence

ATGTGGGATCTGAATGACTCGCTGAAAGATATAGAAGAGTCAGAAGCTTGCTCATCGCAA
AAGACCTCCATAGATGGCGATGATGAGAAGGGAAAACAAGTGGGATCCGTTTCGAATTCA
AGCTCTTCAGCCGTGGTAATAGAAAACGGATCCGACGAAGAGATTGGTGCTTCTGAGAGA
AGATTATTAAGTCGTAGTGGCGGCAGTAAAATATTTGGAGTATGTTTGTATCAAGAAGCC
ATGGAGGAGAGTGAACCAGAACCACCGGTGACCCGGCAGTTTTTTCCTGTTGATTTTCAG
GAGCAGCAAGCCACATCGAGTGAAGCTGGAGCTGGGGGACTGGCCTTCCCTCGGGCTAAC
TGGGTTGGTGTCAAGTTTTGCCAATCGGAGCCCATCGTTGAGGCTGGAAAATCGGTTATT
GAAGCTCCTCAGCCCCTGAAAAAAAGCAGGCGTGGACCCAGGTCAAGGAGTTCTCAGTAT
AGAGGTGTCACCTTTTACAGAAGAACTGGAAGATGGGAATCTCATATATGGGATTCTGGG
AAACAAGTTTATCTAGGTGGATTTGACACTGCACATGCAGCTGCTCGTGCTTATGATAGG
GCAGCTATCAAGTTCCGGGGAGCGGAGGCAGACATAAACTTCAGTATAGAAGATTATGAG
GATGACTTGAAACAGATGAGCAACTTAACCAAGGAAGAGTTTGTACATGTACTTCGCCGA
CAAAGCACCGGTTTCCCCAGAGGAAGCTCCAAATATAGAGGAGTTACTTTGCACAAATGT
GGAAGATGGGAAGCTCGAATGGGCCAATTTTTAGGCAAAAAATACGTTTATTTGGGCTTG
TTCGATACTGAGGTCGAAGCTGCAAGGGCATATGATAGAGCTGCAGTTAAGTGTAATGGC
AAAGATGCTGTTACTAATTTTGATCCCAGCTTATATCAAGATGAGCTTAAAGCCTCTGGT
CATGGTGTAGACCACAATCTAGATTTGAGTTTGGGCAGTTCAGCTTCTAATCAGCAAAGC
AGTGCGGACTTTGCTAATAGAATGCAATATACTGTAATGGAACGGCCTGCTCCGGCATCA
TTGCCCAATGAAGTTGACTGGCACAACCGGGGTTATAGGCCTAAGCAGCAAGAAGCGTAC
AGTAGGCAGCATGATCTACCGTACAAGAGAGATGGGTATAGTGAGGCTGAAACTATGCAA
CTTCTCAGCCAAACCCATCTTCAGTCACCAGCTTCATCATCGCTCAATAAGTCCAGTGAG
ATGCAAAGATATGAGCAATTCAGGAGATCTGGTGAATCCCATTTGCTACATATGGTTCCC
CCACAATGTAACCAATCAAACTATCAAACTCATCAGTTAACTCCAGGCAGCAGTAAGAGA
GGCCGAATTGGGAATGAACTTTCACTGTCAACAAATGATCATCATCAACAATGGCAATCT
GGTCCTCATATGTTTGCAACTGCTGCAGCATCATCAGGATTCCCTCAGCAGATTAGATCC
TCTCACTCTCAGAATTGGCTGCAGAATAATGGATTCCACTCCCTTGTTAGACCCTCCTAA

Peptide Sequence

PEP ID

orange1.1t04055.1
PEP Infomation
Sequence

MWDLNDSLKDIEESEACSSQKTSIDGDDEKGKQVGSVSNSSSSAVVIENGSDEEIGASER
RLLSRSGGSKIFGVCLYQEAMEESEPEPPVTRQFFPVDFQEQQATSSEAGAGGLAFPRAN
WVGVKFCQSEPIVEAGKSVIEAPQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDSG
KQVYLGGFDTAHAAARAYDRAAIKFRGAEADINFSIEDYEDDLKQMSNLTKEEFVHVLRR
QSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCNG
KDAVTNFDPSLYQDELKASGHGVDHNLDLSLGSSASNQQSSADFANRMQYTVMERPAPAS
LPNEVDWHNRGYRPKQQEAYSRQHDLPYKRDGYSEAETMQLLSQTHLQSPASSSLNKSSE
MQRYEQFRRSGESHLLHMVPPQCNQSNYQTHQLTPGSSKRGRIGNELSLSTNDHHQQWQS
GPHMFATAAASSGFPQQIRSSHSQNWLQNNGFHSLVRPS*

Transcript Sequence

Transcript ID

orange1.1t04055.1
Transcript Infomation

gene=orange1.1t04055 CDS=576-2135
Sequence

GATTGCTCATCAGTCATCGAGGAGAAAGGGCAAAAAAAAAAAAACAAAAAACAAAAGTGA
AAAAAATATAAAATATAAAAAAAAAAGAGAGAGAAAAAGGCAAGTTGTCAGAGAGGGAGG
GAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGGAAGGCAGTATTAAGTAA
GTATTAACCTATAGCTGAAATTTGCCTCGTCTATATGCTGTATTGGGCAGTGAGAGAGTA
TTTACGAGATCTTGAAACATCTCCCCTTACTACGACCTTTTTGCAAACCCTTCTGGCCTT
CTCTCTCTCTCTCTGTGTCGTAGGTTCTCTTCTACTTTGAATACTCAACCTTCAAGTTTT
CTTCCTTTGTATATTTATTCTTTTCTCTCTTGTCAAACCAGAGATAGAGAGAATTTTGAA
AAAAAAAAAAATACATAAACAAACCTGTGATCTTTGACGACGAAGTGATGATCAGAATTG
AGAGTGTTTGTCGCTTCTAAGATCGGGAAAAAAGTATATAGAGTCTGTTTAACATATAAA
ATAAATAAATCGTGAGAATTTTTTCTTTTTAAAAAATGTGGGATCTGAATGACTCGCTGA
AAGATATAGAAGAGTCAGAAGCTTGCTCATCGCAAAAGACCTCCATAGATGGCGATGATG
AGAAGGGAAAACAAGTGGGATCCGTTTCGAATTCAAGCTCTTCAGCCGTGGTAATAGAAA
ACGGATCCGACGAAGAGATTGGTGCTTCTGAGAGAAGATTATTAAGTCGTAGTGGCGGCA
GTAAAATATTTGGAGTATGTTTGTATCAAGAAGCCATGGAGGAGAGTGAACCAGAACCAC
CGGTGACCCGGCAGTTTTTTCCTGTTGATTTTCAGGAGCAGCAAGCCACATCGAGTGAAG
CTGGAGCTGGGGGACTGGCCTTCCCTCGGGCTAACTGGGTTGGTGTCAAGTTTTGCCAAT
CGGAGCCCATCGTTGAGGCTGGAAAATCGGTTATTGAAGCTCCTCAGCCCCTGAAAAAAA
GCAGGCGTGGACCCAGGTCAAGGAGTTCTCAGTATAGAGGTGTCACCTTTTACAGAAGAA
CTGGAAGATGGGAATCTCATATATGGGATTCTGGGAAACAAGTTTATCTAGGTGGATTTG
ACACTGCACATGCAGCTGCTCGTGCTTATGATAGGGCAGCTATCAAGTTCCGGGGAGCGG
AGGCAGACATAAACTTCAGTATAGAAGATTATGAGGATGACTTGAAACAGATGAGCAACT
TAACCAAGGAAGAGTTTGTACATGTACTTCGCCGACAAAGCACCGGTTTCCCCAGAGGAA
GCTCCAAATATAGAGGAGTTACTTTGCACAAATGTGGAAGATGGGAAGCTCGAATGGGCC
AATTTTTAGGCAAAAAATACGTTTATTTGGGCTTGTTCGATACTGAGGTCGAAGCTGCAA
GGGCATATGATAGAGCTGCAGTTAAGTGTAATGGCAAAGATGCTGTTACTAATTTTGATC
CCAGCTTATATCAAGATGAGCTTAAAGCCTCTGGTCATGGTGTAGACCACAATCTAGATT
TGAGTTTGGGCAGTTCAGCTTCTAATCAGCAAAGCAGTGCGGACTTTGCTAATAGAATGC
AATATACTGTAATGGAACGGCCTGCTCCGGCATCATTGCCCAATGAAGTTGACTGGCACA
ACCGGGGTTATAGGCCTAAGCAGCAAGAAGCGTACAGTAGGCAGCATGATCTACCGTACA
AGAGAGATGGGTATAGTGAGGCTGAAACTATGCAACTTCTCAGCCAAACCCATCTTCAGT
CACCAGCTTCATCATCGCTCAATAAGTCCAGTGAGATGCAAAGATATGAGCAATTCAGGA
GATCTGGTGAATCCCATTTGCTACATATGGTTCCCCCACAATGTAACCAATCAAACTATC
AAACTCATCAGTTAACTCCAGGCAGCAGTAAGAGAGGCCGAATTGGGAATGAACTTTCAC
TGTCAACAAATGATCATCATCAACAATGGCAATCTGGTCCTCATATGTTTGCAACTGCTG
CAGCATCATCAGGATTCCCTCAGCAGATTAGATCCTCTCACTCTCAGAATTGGCTGCAGA
ATAATGGATTCCACTCCCTTGTTAGACCCTCCTAAGAATATGACATAATGATCGTCTAAT
CTCTCATTTCCTTCAGATTTTTGCTTGTAAGCATGTAAAATCATCAATTGTAGTATTCGA
TCACATATATTTCCAAATTTCCCAGAGAGGAAAGACACCAAAAAAAAAAAAAAAATGAGA
GACAAAAAGGAAAAAAATAAGAAAAAGGAGTGGGGAAGGATACAATATTAAAACCCCTCC
CTTGTGGGAATTAATATTAGTTCGTCAATTGGTCAAA