Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Citrus sinensis

CDS Sequence

CDS ID

orange1.1t04024.1
CDS Infomation

gene=orange1.1t04024
Sequence

ATGGAGACCGAGAAGAAATCGTCGGTGGTGTCGGATGTCGGAGCCTGGGCCATGAACGTC
ATAAGCTCCGTTGGGATTATTATGGCCAACAAGCAGCTTATGTCCTCCTCCGGCTATGCT
TTCAGCTTTGCCACAACTTTAACCGGGTTCCACTTTGCCGTAACGGCATTGGTTGGTTTG
GTGTCTAATGCAACTGGATTATCCGCATCCAAGCACGTGCCTTTGTGGGAGCTCCTCTGG
TTCTCAATTGTTGCCAATATGTCTATTGCCGGCATGAACTTCAGTCTCATGCTCAATTCT
GTTGGTTTCTACCAAATCTCCAAACTTAGCATGATCCCAGTGGTTTGCGTCATGGAATGG
ATCCTCCACAACAAGCACTATTCAAAAGAAGTGAAAATGGCTGTTGTGGTTGTCGTTATA
GGTGTGGGTGTTTGCACAATAACCGATGTCAAAGTTAATGCCAAAGGTTTTCTGTGCGCC
TGTGTAGCAGTCCTCTCTACGTCTTTGCAGCAAATTACAATAGGTTCCTTACAGAAGAAA
TATTCAATTGGCTCTTTTGAATTACTGAGTAAGACAGCTCCAATTCAAGCCGTCTCTCTA
CTTGTCCTTGGTCCATTTGTTGATTACTACCTTAATGGAAAATTCATAACAACCTATAAG
ATGACTTCTGGGGCCATTCTTTTTATATTTCTATCATGTGCACTAGCTGTGTTCTGCAAT
GTGAGTCAGTACCTGTGCATTGGGCGATTTTCTGCAACTTCATTCCAGGTTTTAGGTCAC
ATGAAAACGGTTTGTGTTCTCACATTGGGATGGCTGCTCTTTGATTCTGCACTGACTTTC
AAGAATATAAGCGGGATGATTCTTGCTGTTGTTGGTATGGTAATATATAGTTGGGCTGTC
GAGGCTGAAAAACAGAGAAATGCCAAGACTTCGCCCCAGTCAAAGAACAGCCTTACAGAA
GAGGAAATCAGACTTCTGAAGGAGGGAGTAGAAAACACTCCCGTTAAAGATGTTGAACTT
GGTGAGACAAAGGAGTAA

Peptide Sequence

PEP ID

orange1.1t04024.1
PEP Infomation
Sequence

METEKKSSVVSDVGAWAMNVISSVGIIMANKQLMSSSGYAFSFATTLTGFHFAVTALVGL
VSNATGLSASKHVPLWELLWFSIVANMSIAGMNFSLMLNSVGFYQISKLSMIPVVCVMEW
ILHNKHYSKEVKMAVVVVVIGVGVCTITDVKVNAKGFLCACVAVLSTSLQQITIGSLQKK
YSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLSCALAVFCN
VSQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWAV
EAEKQRNAKTSPQSKNSLTEEEIRLLKEGVENTPVKDVELGETKE*

Transcript Sequence

Transcript ID

orange1.1t04024.1
Transcript Infomation

gene=orange1.1t04024 CDS=617-1654
Sequence

ACGAAAACGGTCAACTGCAAATTGGGGGAAAAAAAAAGGTTTTAATTGGTTAAGAAAAAA
AAAAGATAAATAATATAAAATGGTAAAGGTGTGAAAAAGCGTCGAAGGAGAAAAGAAGGT
GTAGATCTTAACACAAAACTACAACGGGAATTAGGGGTGTGAAGAATTGACTGATTAAGA
GCGGCAGATGAGGGATATAACTATCTAAGATAGAGAGAGAACAACTGTCGGGGAAGAGAG
AGAGCACAGTGAAGAAGAACGACGGCGGCATTTGGGATATAGAGCTGTAACTGTAACTTC
CATCCTGCCTGTGCCTTCCTTCCTTCCTTCCGCAGCCAATCCAATCTAAACCATAAAACG
TGTTGCACAACCCAAGAGTCCGGTCCAGATCTCCTTTTTTTTTCTCCTCCTTCTCTGATT
TTCGTAAGTACAGATAGCGACACAGATTTGAAATTTCTCCCAAAAATAATCACTGTATAT
CCACATTTACATCATATATTGTATACATCTTATTCAATTGAGGTAGGCGGAACGAATCAA
AAGAAGAAAATTTCAAAATCCATATTATAACCTAGCGTGAACTTGAGATCTCTGAAATTG
AGTACAAGAATTACTGATGGAGACCGAGAAGAAATCGTCGGTGGTGTCGGATGTCGGAGC
CTGGGCCATGAACGTCATAAGCTCCGTTGGGATTATTATGGCCAACAAGCAGCTTATGTC
CTCCTCCGGCTATGCTTTCAGCTTTGCCACAACTTTAACCGGGTTCCACTTTGCCGTAAC
GGCATTGGTTGGTTTGGTGTCTAATGCAACTGGATTATCCGCATCCAAGCACGTGCCTTT
GTGGGAGCTCCTCTGGTTCTCAATTGTTGCCAATATGTCTATTGCCGGCATGAACTTCAG
TCTCATGCTCAATTCTGTTGGTTTCTACCAAATCTCCAAACTTAGCATGATCCCAGTGGT
TTGCGTCATGGAATGGATCCTCCACAACAAGCACTATTCAAAAGAAGTGAAAATGGCTGT
TGTGGTTGTCGTTATAGGTGTGGGTGTTTGCACAATAACCGATGTCAAAGTTAATGCCAA
AGGTTTTCTGTGCGCCTGTGTAGCAGTCCTCTCTACGTCTTTGCAGCAAATTACAATAGG
TTCCTTACAGAAGAAATATTCAATTGGCTCTTTTGAATTACTGAGTAAGACAGCTCCAAT
TCAAGCCGTCTCTCTACTTGTCCTTGGTCCATTTGTTGATTACTACCTTAATGGAAAATT
CATAACAACCTATAAGATGACTTCTGGGGCCATTCTTTTTATATTTCTATCATGTGCACT
AGCTGTGTTCTGCAATGTGAGTCAGTACCTGTGCATTGGGCGATTTTCTGCAACTTCATT
CCAGGTTTTAGGTCACATGAAAACGGTTTGTGTTCTCACATTGGGATGGCTGCTCTTTGA
TTCTGCACTGACTTTCAAGAATATAAGCGGGATGATTCTTGCTGTTGTTGGTATGGTAAT
ATATAGTTGGGCTGTCGAGGCTGAAAAACAGAGAAATGCCAAGACTTCGCCCCAGTCAAA
GAACAGCCTTACAGAAGAGGAAATCAGACTTCTGAAGGAGGGAGTAGAAAACACTCCCGT
TAAAGATGTTGAACTTGGTGAGACAAAGGAGTAATATAATTTTTTTTAGCAGGTATTTCA
TTTGTTTTAATTCATCTTAGTCTGTATCTTTTACCTGATTTATGCAGCAGGACGACATTG
ATCCATATGGACTCCTCCACACATATTTATTTTAGAAATTGTGGTTATGATTAATTGAAA
ATTTTGTTTCATGTTTAATTTATCTCACTTTTCCCTGGAGTATGTGTGATGCTCTAAGAG
ATCGGCAAATGAGTTTAGAATTGGACGATAAAATGTAAATTTCAGGTCATGTTGATGTTC
AGATTGTGTTGATGGTTGTGTTAAGAAATGTACCAATGATTTTCATGTGATCTGACTCAA
ATGTGTCAATGGTTAGCAACCTCAAGTGAGCTCGAACTGTCTGTGGAGTT