Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Citrus sinensis

CDS Sequence

CDS ID

orange1.1t03773.1
CDS Infomation

gene=orange1.1t03773
Sequence

ATGTTGAATCTACAATTTCATAATCAGTCTCAATCTATCAGAACCTTAAGTCCATTACCC
AACCCATTTCTCCATGGAAATGGTCCAGCTTTTCGTCCAGCTCAGTTGAGACCTTCATTC
AAAAAAGCACCCAAAATCGGAGTCGGCTTTTCTCCTAGTATTAACAGCATCAAAGCTATA
TTTAATTTGACTGCTGAAAAGTCTACAAAAGTTAAGGCTGTTATCACTGTGAAACCAATT
GTCTCTGATCCCTTAGCAGTTGAAAAATTAATTGGTACACTTGTCTTGGAGCTTGTTAGC
GCCGAGCTTGATCCTGAAACTGGAAAAGAGAAACCCACCATCAAAAGCCGAGCACATAGA
TCACTGTTCACGGATGACGATGGAAACCTAAAATATAAAACAGAATTTGACGTTCCATCA
AATTTTGGAGAAGTTGGTGCCATATTGGTGGAGGCTGATCAACTCACAGAAACGTTTTTG
AAGGATATTGCTCTTGATGGTCTCCGGAATGGTCCTGTGAACATAGCTTGTGATTCATGG
ATTCAGCCAAAGATAGTTGACAAACAGAAGAGAATTTTCTTTACTAATAAGTCATACTTG
CCATCACAAACACCGAATGGATTAGCGAGGTTAAGAGCTGAAGAACTTAACAATTTGCAA
GGCGATGGACAAGGAGAGCGTAAAATACACGAAAGAATATATGATTATGATGTGTACAAT
GATCTCGGAATGCCTGATTCCATCTTGAAGTCAGATTTGGTACGACCGGTGCTTGGTGGC
AAAGAGCACCCTTATCCTAGGCGTTGCAGAACTGGCCATCCAAAAAGTTCTAAAGATCCA
GCCTCAGAATCATGGAGCCTCTCAGTCTACGTGCCCAGAGATGAAGCATTCTCACTGTTG
AAAACAGCACAATTTTCAGCTACGGGAGTATACTCAGCGTTGCATGCAGTGATACCATTC
GTAGAATCCATCCTTCGCATTGGAAAGGATAAAGGGTTTCCATCACTCGAGGCCATTGAC
AAACTTTTCAATGAAGGAGTTGAGCTGCCTCCAGAGATCGAAAAGCTACCTTCATGGCTA
AAAATTCTTCCCAACTTTTTTAAGTCCATTGCCAATACAGGCAAAGATATTTTGCGGTTC
GAGACACCGGAAACATTGAAGAGAGACAAACTCTTTTGGTTAAGGGACGAGGAATTTGGT
AGAGAGACTCTAGCTGGTCTCAACCCATACGGCATAAGTTTGGTCGCGGACTGGCCGCTG
AAAAGCACACTTGATCCTGAAACTTACGGCCCAACGGAATCAGCAATTACCAAAGAATTG
ATCGAGAAAGAAATTGGAGGCTCGATGACTGTTGAAGAGGCTATAAAACAAAAGAAGCTG
TTTATCATAGATTACCATGATGCATTATTACCGTATGTGGAGAAAGTGAGACAGATCAAA
GACACAACTCTGTATGGATCTCGTACAGTATTCTTCTTGAACCCAGATGGCACACTGAGA
CCGCTAGCCATTGAGCTAACTCGGCCTCCAATGGATGGCAAGCCACAATGGAAACAAGTG
TTTACACCCAGTACTGGGAATTCTACTGAGTCCTGGCTTTGGAGACTGGCCAAGGCTCAT
GTCCTTGCTCATGATTCTGGCTATCACCAACTCATTAGTCATTGGTTAAGAACTCATTGT
TGCGTTGAGCCTTACGTAATTGCAACCAATCGGAGACTCAGTGCGATGCATCCAATCAAT
AGACTGTTGAAACCTCATTTTCGCTACACAATGGAGATCAATGCTTTAGCTCGAAAAGTC
CTTATTAATGCTGATGGAATCTTTGAAACAAATTTCTTTCCTGGAAAATATTGTATGGAG
TTCAGCTCCGTCATCTATGACAAGCACTGGAGGTTTGACAATGAAGGACTCCCCAAGGAC
CTTATTAGGAGGGGAATAGCTGTTGAAGATCCAAAAGCTCCTCATGGCCTTAAGCTAAAC
ATCGAAGACTACCCATATGCCAACGATGGGCTCGATCTCTGGGATGCCTTAAAACAATGG
GTTACTAACTATGTGAACCACTATTATCCCGATCCAAGCCTTGTAGAGTCTGATGAGGAG
CTCCAAGCATGGTGGACTGAAATTCGAACCGTGGGACACGCCGAGAAAAAGGATGAACCA
TGGTGGCCTGTCCTGAAAACCCCTCAGGATTTAATTGAAATCATCACAACCATCGCTTGG
GTTGCATCCGGTCACCATGCAGCTGTGAACTTTGGGCAATATTTATACGGAGGCTATTTC
CCTAACAGGCCAACTGTTGCAAGAACCAACCTGCCAAATGAAGATCAAACAAAAGAAGAA
TGGAAATCCTTTCTCGAAAAACCTGAAGCTGCACTTTTGCGATGCTTCCCTGCACAGTTT
CAAGCTCTTACGGTAATGCTCGTTATTGATTTGCTGTCGACTCATTCGCCTGATGAAGAG
TATTTGGGGAAGGAAATGGAGCCGGCATGGGGTGATGACCCAGTTATAAAGGCTGCATTT
GAAGAGTTTAACCTCAAAATGCAGGAGCTTGAAAGGATCATTGATGACAGAAATTCGAAT
GAGAATTTGAAGAACAGAACTGGAGCTGCGATTGTTCCATATGAGCTCCTGAAGCCGTTT
TCGGAACCTGGCGCGACAGGAAAAGGAGTTCCCTACAGCATCTCCATCTAG

Peptide Sequence

PEP ID

orange1.1t03773.1
PEP Infomation
Sequence

MLNLQFHNQSQSIRTLSPLPNPFLHGNGPAFRPAQLRPSFKKAPKIGVGFSPSINSIKAI
FNLTAEKSTKVKAVITVKPIVSDPLAVEKLIGTLVLELVSAELDPETGKEKPTIKSRAHR
SLFTDDDGNLKYKTEFDVPSNFGEVGAILVEADQLTETFLKDIALDGLRNGPVNIACDSW
IQPKIVDKQKRIFFTNKSYLPSQTPNGLARLRAEELNNLQGDGQGERKIHERIYDYDVYN
DLGMPDSILKSDLVRPVLGGKEHPYPRRCRTGHPKSSKDPASESWSLSVYVPRDEAFSLL
KTAQFSATGVYSALHAVIPFVESILRIGKDKGFPSLEAIDKLFNEGVELPPEIEKLPSWL
KILPNFFKSIANTGKDILRFETPETLKRDKLFWLRDEEFGRETLAGLNPYGISLVADWPL
KSTLDPETYGPTESAITKELIEKEIGGSMTVEEAIKQKKLFIIDYHDALLPYVEKVRQIK
DTTLYGSRTVFFLNPDGTLRPLAIELTRPPMDGKPQWKQVFTPSTGNSTESWLWRLAKAH
VLAHDSGYHQLISHWLRTHCCVEPYVIATNRRLSAMHPINRLLKPHFRYTMEINALARKV
LINADGIFETNFFPGKYCMEFSSVIYDKHWRFDNEGLPKDLIRRGIAVEDPKAPHGLKLN
IEDYPYANDGLDLWDALKQWVTNYVNHYYPDPSLVESDEELQAWWTEIRTVGHAEKKDEP
WWPVLKTPQDLIEIITTIAWVASGHHAAVNFGQYLYGGYFPNRPTVARTNLPNEDQTKEE
WKSFLEKPEAALLRCFPAQFQALTVMLVIDLLSTHSPDEEYLGKEMEPAWGDDPVIKAAF
EEFNLKMQELERIIDDRNSNENLKNRTGAAIVPYELLKPFSEPGATGKGVPYSISI*

Transcript Sequence

Transcript ID

orange1.1t03773.1
Transcript Infomation

gene=orange1.1t03773 CDS=195-2885
Sequence

ACACAATCATCCTACATCAATATTTCTCTTCATTTTCATGTGCCATAAGTTGTTCTTTCT
CTCTTCACCATAACTTGCTCTCTTTCTTTCTCCAGCTTTCTATTTAAAGAGTGGATTGAT
CACCCAAGTCTCACTCACCAAGCCAAATTAAAATTCTGTTAAGGAAAGCTTAAGTGTCTC
TTTCTTATGAAAGAATGTTGAATCTACAATTTCATAATCAGTCTCAATCTATCAGAACCT
TAAGTCCATTACCCAACCCATTTCTCCATGGAAATGGTCCAGCTTTTCGTCCAGCTCAGT
TGAGACCTTCATTCAAAAAAGCACCCAAAATCGGAGTCGGCTTTTCTCCTAGTATTAACA
GCATCAAAGCTATATTTAATTTGACTGCTGAAAAGTCTACAAAAGTTAAGGCTGTTATCA
CTGTGAAACCAATTGTCTCTGATCCCTTAGCAGTTGAAAAATTAATTGGTACACTTGTCT
TGGAGCTTGTTAGCGCCGAGCTTGATCCTGAAACTGGAAAAGAGAAACCCACCATCAAAA
GCCGAGCACATAGATCACTGTTCACGGATGACGATGGAAACCTAAAATATAAAACAGAAT
TTGACGTTCCATCAAATTTTGGAGAAGTTGGTGCCATATTGGTGGAGGCTGATCAACTCA
CAGAAACGTTTTTGAAGGATATTGCTCTTGATGGTCTCCGGAATGGTCCTGTGAACATAG
CTTGTGATTCATGGATTCAGCCAAAGATAGTTGACAAACAGAAGAGAATTTTCTTTACTA
ATAAGTCATACTTGCCATCACAAACACCGAATGGATTAGCGAGGTTAAGAGCTGAAGAAC
TTAACAATTTGCAAGGCGATGGACAAGGAGAGCGTAAAATACACGAAAGAATATATGATT
ATGATGTGTACAATGATCTCGGAATGCCTGATTCCATCTTGAAGTCAGATTTGGTACGAC
CGGTGCTTGGTGGCAAAGAGCACCCTTATCCTAGGCGTTGCAGAACTGGCCATCCAAAAA
GTTCTAAAGATCCAGCCTCAGAATCATGGAGCCTCTCAGTCTACGTGCCCAGAGATGAAG
CATTCTCACTGTTGAAAACAGCACAATTTTCAGCTACGGGAGTATACTCAGCGTTGCATG
CAGTGATACCATTCGTAGAATCCATCCTTCGCATTGGAAAGGATAAAGGGTTTCCATCAC
TCGAGGCCATTGACAAACTTTTCAATGAAGGAGTTGAGCTGCCTCCAGAGATCGAAAAGC
TACCTTCATGGCTAAAAATTCTTCCCAACTTTTTTAAGTCCATTGCCAATACAGGCAAAG
ATATTTTGCGGTTCGAGACACCGGAAACATTGAAGAGAGACAAACTCTTTTGGTTAAGGG
ACGAGGAATTTGGTAGAGAGACTCTAGCTGGTCTCAACCCATACGGCATAAGTTTGGTCG
CGGACTGGCCGCTGAAAAGCACACTTGATCCTGAAACTTACGGCCCAACGGAATCAGCAA
TTACCAAAGAATTGATCGAGAAAGAAATTGGAGGCTCGATGACTGTTGAAGAGGCTATAA
AACAAAAGAAGCTGTTTATCATAGATTACCATGATGCATTATTACCGTATGTGGAGAAAG
TGAGACAGATCAAAGACACAACTCTGTATGGATCTCGTACAGTATTCTTCTTGAACCCAG
ATGGCACACTGAGACCGCTAGCCATTGAGCTAACTCGGCCTCCAATGGATGGCAAGCCAC
AATGGAAACAAGTGTTTACACCCAGTACTGGGAATTCTACTGAGTCCTGGCTTTGGAGAC
TGGCCAAGGCTCATGTCCTTGCTCATGATTCTGGCTATCACCAACTCATTAGTCATTGGT
TAAGAACTCATTGTTGCGTTGAGCCTTACGTAATTGCAACCAATCGGAGACTCAGTGCGA
TGCATCCAATCAATAGACTGTTGAAACCTCATTTTCGCTACACAATGGAGATCAATGCTT
TAGCTCGAAAAGTCCTTATTAATGCTGATGGAATCTTTGAAACAAATTTCTTTCCTGGAA
AATATTGTATGGAGTTCAGCTCCGTCATCTATGACAAGCACTGGAGGTTTGACAATGAAG
GACTCCCCAAGGACCTTATTAGGAGGGGAATAGCTGTTGAAGATCCAAAAGCTCCTCATG
GCCTTAAGCTAAACATCGAAGACTACCCATATGCCAACGATGGGCTCGATCTCTGGGATG
CCTTAAAACAATGGGTTACTAACTATGTGAACCACTATTATCCCGATCCAAGCCTTGTAG
AGTCTGATGAGGAGCTCCAAGCATGGTGGACTGAAATTCGAACCGTGGGACACGCCGAGA
AAAAGGATGAACCATGGTGGCCTGTCCTGAAAACCCCTCAGGATTTAATTGAAATCATCA
CAACCATCGCTTGGGTTGCATCCGGTCACCATGCAGCTGTGAACTTTGGGCAATATTTAT
ACGGAGGCTATTTCCCTAACAGGCCAACTGTTGCAAGAACCAACCTGCCAAATGAAGATC
AAACAAAAGAAGAATGGAAATCCTTTCTCGAAAAACCTGAAGCTGCACTTTTGCGATGCT
TCCCTGCACAGTTTCAAGCTCTTACGGTAATGCTCGTTATTGATTTGCTGTCGACTCATT
CGCCTGATGAAGAGTATTTGGGGAAGGAAATGGAGCCGGCATGGGGTGATGACCCAGTTA
TAAAGGCTGCATTTGAAGAGTTTAACCTCAAAATGCAGGAGCTTGAAAGGATCATTGATG
ACAGAAATTCGAATGAGAATTTGAAGAACAGAACTGGAGCTGCGATTGTTCCATATGAGC
TCCTGAAGCCGTTTTCGGAACCTGGCGCGACAGGAAAAGGAGTTCCCTACAGCATCTCCA
TCTAGAGTGCACGAAGCTCATTGCAAATCAAACTTTAAGAAATAAGATGTCATACGTCTT
TAATTTAAATAAGCTGCTTCGCCGGAATTTTTTCCGGCTAGCCAAATACCAAAACTACCA
ATGAGCTCATTACACGGTTTTGGTCGTTGATGTTTGTACTTTATGTTGCGTGGGAGTGGG
TCCTAGGAGTCACTTCTAGAATAAATTGTTTGTAGCTCTGTGAGTATATGATGTGATATA
ATGTTATGTTTTCTTTATCAAGAATAAATCTTCTTCAAACTAATGTGATCCATGGGTAAT
TGGGAACTCATACTCTATTTAGAATAATACTATATGAATTTAGATTTTATG