Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Citrus sinensis

CDS Sequence

CDS ID

orange1.1t03224.2
CDS Infomation

gene=orange1.1t03224
Sequence

ATGGCGAATCATCTGTATGGTTATAGCTCAAGCTATGGAGCTGGAGGAGGAGGTGGGACC
CCTAAATCATCGGCAGCTCTCTCCGGCGTCTACACATCGCGTTCATTGGCAGACGCTTAC
CATTTATCAGAGTCGACTCTTCGTTACGACCCTGATCACTCCATTTACGATTCATTTCGG
TACTCGGGCTATTTGTCCTCCCAGGCTCAGCAACCTTGGCCCCCTGGCGTCGATCCCACT
GACCACCTCAAACGACCCTCCGAAGCACTCTATCATCCGACTCTTTTGGGTACCCATACC
TCAATTGGGCAAAGTGAAGCTTGGTATTCTACGAACTCTTTAGCCAAGCGCCCTAGAATC
GAGAGTGCAAGCAATTTACCTGTATATCCACAGAGGCCTGGAGAAAAGGATTGTGCCTAC
TATATGCAAACAAGAACCTGTAAATTTGGAGATACCTGCAAGTTTGACCACCCTATTTGG
GTTCCAGAAGGTGGAATCCCAGATTGGAAAGAGGTTCCAGTTATTGCAAGTAGCGAATCC
CTCCCTGAGAGACCAGGAGAACCAGATTGTCCTTACTTTCTGAAAACTCAAAGGTGCAAG
TTTGGTTCCAAGTGCAAGTTTAATCATCCAAAAGATAAATTGATTGGTTCGAGTGATTCA
GGGAATGGTGATGTTTCTGCCTTACCAGAGAGGCCGTCTGAGCCCCCATGTGCTTTCTAT
CTGAAGAATGGAACTTGTAAATTTGGTGCAACTTGCAAATTTGATCATCCTAAGGATTTC
CAATTACCATCAGTTGGACAAGAAAATGGCATTGGTGAGCAGAATGAGTCAGTAATTAAG
ACTGACGAAACAACTGGACTTTTAAATCCTGGCATGTCTCTTTTTTCACATGCCCCGGCA
ATGCTACATAACTCCAAAGGACTTCCTATCAGACCGGGTGAACTGGATTGTCCTTTCTAC
TTGAAAACTGGGAGTTGCAAATATGGTTCTACTTGTCGCTACAATCATCCTGAAAGGACT
GCAATCAATCCTCCCGCTGCTGCAATTGTTCATCCTCTTATAACTTCCCCAGCAGCTAGT
CTTGGCATTAGTGTTGTTAGTCCAGCAGCCTCACTATATCAAACTATTGATCCCAGATTA
GCTCAGGCAACTCTAGGAGTTAGCCCATCTCTCTACCCTCAACGGCCAGGACAGATGGAA
TGTGATTACTATATGAAGACTGGGGTGTGTAAGTTTGGGGAAAAATGCAAGTTTCACCAC
CCTATTGATAGATCAGCAGCAAAGACACCTTCTCAAGAGACTGTCAAGCTTACTCTTGCA
GGACTGCCTAGGAGAGAGGTATGA

Peptide Sequence

PEP ID

orange1.1t03224.2
PEP Infomation
Sequence

MANHLYGYSSSYGAGGGGGTPKSSAALSGVYTSRSLADAYHLSESTLRYDPDHSIYDSFR
YSGYLSSQAQQPWPPGVDPTDHLKRPSEALYHPTLLGTHTSIGQSEAWYSTNSLAKRPRI
ESASNLPVYPQRPGEKDCAYYMQTRTCKFGDTCKFDHPIWVPEGGIPDWKEVPVIASSES
LPERPGEPDCPYFLKTQRCKFGSKCKFNHPKDKLIGSSDSGNGDVSALPERPSEPPCAFY
LKNGTCKFGATCKFDHPKDFQLPSVGQENGIGEQNESVIKTDETTGLLNPGMSLFSHAPA
MLHNSKGLPIRPGELDCPFYLKTGSCKYGSTCRYNHPERTAINPPAAAIVHPLITSPAAS
LGISVVSPAASLYQTIDPRLAQATLGVSPSLYPQRPGQMECDYYMKTGVCKFGEKCKFHH
PIDRSAAKTPSQETVKLTLAGLPRREV*

Transcript Sequence

Transcript ID

orange1.1t03224.2
Transcript Infomation

gene=orange1.1t03224 CDS=145-1488
Sequence

CTGGAGAGGTTTTATATTCAAAATAAATAAATAAATAGATAAAATCTCTGTTCAATTGCT
TTCTTCCTTTGCTTTAGTGATAAATTCAATTTAGTCAGTCAGTTCAGTTCAGTACTAGGG
TTTGGAAGTGGAATTAATTAGCTGATGGCGAATCATCTGTATGGTTATAGCTCAAGCTAT
GGAGCTGGAGGAGGAGGTGGGACCCCTAAATCATCGGCAGCTCTCTCCGGCGTCTACACA
TCGCGTTCATTGGCAGACGCTTACCATTTATCAGAGTCGACTCTTCGTTACGACCCTGAT
CACTCCATTTACGATTCATTTCGGTACTCGGGCTATTTGTCCTCCCAGGCTCAGCAACCT
TGGCCCCCTGGCGTCGATCCCACTGACCACCTCAAACGACCCTCCGAAGCACTCTATCAT
CCGACTCTTTTGGGTACCCATACCTCAATTGGGCAAAGTGAAGCTTGGTATTCTACGAAC
TCTTTAGCCAAGCGCCCTAGAATCGAGAGTGCAAGCAATTTACCTGTATATCCACAGAGG
CCTGGAGAAAAGGATTGTGCCTACTATATGCAAACAAGAACCTGTAAATTTGGAGATACC
TGCAAGTTTGACCACCCTATTTGGGTTCCAGAAGGTGGAATCCCAGATTGGAAAGAGGTT
CCAGTTATTGCAAGTAGCGAATCCCTCCCTGAGAGACCAGGAGAACCAGATTGTCCTTAC
TTTCTGAAAACTCAAAGGTGCAAGTTTGGTTCCAAGTGCAAGTTTAATCATCCAAAAGAT
AAATTGATTGGTTCGAGTGATTCAGGGAATGGTGATGTTTCTGCCTTACCAGAGAGGCCG
TCTGAGCCCCCATGTGCTTTCTATCTGAAGAATGGAACTTGTAAATTTGGTGCAACTTGC
AAATTTGATCATCCTAAGGATTTCCAATTACCATCAGTTGGACAAGAAAATGGCATTGGT
GAGCAGAATGAGTCAGTAATTAAGACTGACGAAACAACTGGACTTTTAAATCCTGGCATG
TCTCTTTTTTCACATGCCCCGGCAATGCTACATAACTCCAAAGGACTTCCTATCAGACCG
GGTGAACTGGATTGTCCTTTCTACTTGAAAACTGGGAGTTGCAAATATGGTTCTACTTGT
CGCTACAATCATCCTGAAAGGACTGCAATCAATCCTCCCGCTGCTGCAATTGTTCATCCT
CTTATAACTTCCCCAGCAGCTAGTCTTGGCATTAGTGTTGTTAGTCCAGCAGCCTCACTA
TATCAAACTATTGATCCCAGATTAGCTCAGGCAACTCTAGGAGTTAGCCCATCTCTCTAC
CCTCAACGGCCAGGACAGATGGAATGTGATTACTATATGAAGACTGGGGTGTGTAAGTTT
GGGGAAAAATGCAAGTTTCACCACCCTATTGATAGATCAGCAGCAAAGACACCTTCTCAA
GAGACTGTCAAGCTTACTCTTGCAGGACTGCCTAGGAGAGAGGTATGAATTTTATTTTTC
CATCATTTCATTCAGGTAATAGCATATTGAGGTCCTCTTTCATCCAATAATTCAGGTATG
CTTGTTGCAGTTGCTTCCACAAAAAGGTGGAATCAGTTTGTGGAAAAACAAAATTTAGTC
TTTTGTGTGAATAAATAGTGTTGTTAACCTTAGTGTGTGTTCTGTCTTCTTTATCAAGTA
TCAAATTCATAGCATGCCACGTCTACGCTGTCGTAAGTGAGAACATGAGGCAGATTAATA
AAAATACCATCTTCCGAATTTCATCTTCTACTCTTAAATGGAAAATAAATTTATTTTTTA
ACCAAACTGTTTGAAGCATATTTTGTTGATTATGTATGATATTGCACCGCTTTCTCTTAT
TATACCTTCAGAGGAAGTAAAAGACTCAAATGAATGGCCATTTTGGTGTGTTAAGATTAT
GGCTTCTTTTGTTTCTTCTTCATGTCATCCTCATCCATGCCTGTGTTCTTATTTACATGG
GTGGGAGTGTGGGACTTGAGAGTGAGATCAGAGAAGGTATTTCCTCTGCTAGCTTTGCTT
GTTGAGATCTTGCAAATTGTATTACTACCCAGCAATGAGGATTAGGAAGGGGATCTCAGC
ATTATTCTTATGATTGGGCATTTGGGCTGTGATAATCATATAATACCTTTTACACATGTT
CATGTCTTTTAAGTTTCTTGTTTATTAACACATGTTGGCTGATGGTAAGTGCTCAATGTT
ATTGGTCATGGCAACTTATTGTTCAAATTTTAACCATGTTGACATTATGTACATAAATAT
ACCCTACAAGGGTAGGGGACTGATATGAGCTGAACACTTTTTACAGGGTGCTGTTCATTG
TCCATATTATATGAAGACTGGCACATGCAAGTATGGTGCAACATGCAAGTTTGACCACCC
ACCCCCGGGAGAGGTCATGGCCATTTCGGCATTGGACGGCACATCCACAGCTGTTGGTGA
GGAAGTTAAGGGAGATGAGAAAGAGAGTGAAGTGGCACCAAGCACAGCAGTCTGACATTA
AACATGCCAGTCAAGTAAATGTAACGCAAATTTTTTGCTAATCAATTGTAAAAGCTCTAG
TATTTTTGTGCAATCTCCGTTTTCCAGACTAAGGAGCTAGCAATTATTAGTGTTTAAGTT
TTGTTTGTTACCTTTTCTTGATCATTATTTCTTGACGATATCGGCATTACCTGCCAAGAA
GGCTGATATTATTCGCCCCAGCACGTTAGAGCACTTGACGTTATAGTACACGGTGGGATG
CATGTTACAATTTCATTGCCAGGGTTGTGGGCCCATTACATAGTTTTGCCAATGAAAAAT
TGACACATCATGCATATTACCGTGCGCGACGGCGCGCATCTGATATAAATTCTCTCTCTC
TGTATAAAATGCTTTGATGCTTTGCCGGACGGCGGCCAACTGGTCACCAGCGAAGTAAGT
TTTGAGGAAACAGCTTCTGCAAG