Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Citrus sinensis

CDS Sequence

CDS ID

orange1.1t03177.1
CDS Infomation

gene=orange1.1t03177
Sequence

ATGAGTGGTGAAATGTTAAACACGGGAGCCGTTTTAGTTAGTCTCGTTTTTATCATAATC
AATTTCTCCCCAGCAATAATTGCTGTGCGTGCTAGCAATGAAAGTGACAAAGATGGATTA
CAAACCTACATAATTTACGTGCAAAAGCCAGAGCAAGGTGATTTAGACAGCTGGTACCGT
TCATTCTTGCCAGAAGCTACAATCTCGAACTCAAGCGATCACGATCGTAATCAATCATCA
CGGATGTTGTATTTCTATAAGAATGTGATCTCGGGTTTTGCTGCAAGATTGACAGCAGAG
GAAGTAAAGGCCATGGAAACAAAGAAGGGGTTTATATCAGCCCGTGTTGAAAATACATTG
CATCTACACACAACCCACACTCCTAACTTCTTGGGTTTGCATAGAAGTTCAGGATTTTGG
AAAGATTCGAATTTCGGAAAAGGAGTAATTATTGGAGTTTTGGACACAGGCATAACACCT
GGTCATCCTTCATTTAATGACGAAGGCATGCCTCCACCACCAGCAAAGTGGAGAGGAAAA
TGTGAATTAGTAGGGGCGACTTGTAATAATAAGCTAATTGGGGTAAGAAATTTTTTTTGT
GGCAAAGATGGCTCAGCTATTGATTATACTGGGCATGGAACCCATACGGCAAGCACGGCC
GCTGGGAACTTCGTGCATGGTGCAAATATATTTGGCCAAGCCAATGGAACCGCAGTAGGC
ATGGCGCCTTTAGCTCACTTGGCAGTGTACAAAGTTTGTAATCCCAACGTCTATTGTCCC
GAGAGTGCAGTTATTGCAGGAATTGACGCTGCTATTGAAGATGGTGTTGATGTGCTTTCT
CTTTCATTCGGCCTTGGTTTATCGCAATTCTATGATAACGGAATTGCAAAAGCAACATTT
GAAGCAATTCGGAGAGGCATTTTTGTCAGTATTGCGGCAGGGAATTCTGGACCAAATCAT
TATACTTTAGTTAATGACGCTCCATGGATGCTTACTGTGGGAGCAAGCACCATTGACAGA
GGCATAACTATATCGGTTCGGCTCGGAAATCAAGAAACATACGACGGTGAGGCACTTTGG
CAATGGACAGATATCCCTTCCAAGCGATTACCTCTTGTTTATCCTGACGCAAGGAATCAT
TCGACAACAACATTCTGCTCACCGGAAACTTTAAAAAGTGTTGATGTCAAAGGCAAAGTA
GTATTATGCCAAAGAGGTGCATCTGGAGATGATGTCTTGAATGCTGGTGGTGCTGCCATG
ATTTTAATGAATGACGAACTTTTTGGTGACTCTACTTTAATCCAACGTAATTCGCTTCCA
AATGTGCGTGTAAGTCATGCAGTTTCGGAGAGCATAAAAGCCTACATAAATTCAACATCG
TCGCCAACTGCTGCATTAGTGATGAAAGGAACTGTAATTGGCGGAGGATCTGCTCCTCAG
GTTGTTGCTTTCTCTGGAAGAGGACCCAGCAGAATAAGCCCTGGAATCTTGAAGCCAGAC
ATTATTGGACCTGGCCTGAACATTATAGCTGCCTGGAAAACTACTGTGGACCCCCTAGCA
AATAGAGTATACACATTTGACATAGTTTCAGGCACATCAATGGCTTGCCCGCATCTTAGT
GGTGTAGCAGCTTTGCTCAAAAGTGCTCATCCTAACTGGTCACATGCTGCTATAAAATCT
GCCATGATGACTACTGCTGATACAGTAAACCTTGAAGGCAAGCCAATTCTTGATTGCACT
CGTCTTCCAGCTGATCTGTATGCAGTTGGTGCAGGCCAGGTTAACCCATCAAAAGCAAAT
GATCCAGGACTTGTTTACGATATCCAGCCCGATGATTACATTCCTTATTTATGTGGCTTG
AATTACACAGACGAACAGGTGCAAAGCATTGTGGATCGTGAAGTTCAATGCGCAAAAGTA
TCAAGCATACCAGAAGCAGAACTAAATTATCCTTCATTTTCCATCAAATTGGGGTATAGT
CCTCAGACATATCATAGAACAGTAACAAACGTTGGAAAAGCTAAATCATTCTACACTCGC
CAAATGGTTGCCCCTGAAGGAGTGGAGATTACTGTACAACCCCATAATATATCCTTCGCA
GCGAAAAATCAAAAGGTGACATACTCGGTGACATTCACTAGAACAGGAAATACTAATGCA
TCTTCTGCACAAGCGTATTTGAGCTGGGTTTCTGATAAATATACCGTGAAGAGCCCAATT
GCAATCAGTTTTGAATGA

Peptide Sequence

PEP ID

orange1.1t03177.1
PEP Infomation
Sequence

MSGEMLNTGAVLVSLVFIIINFSPAIIAVRASNESDKDGLQTYIIYVQKPEQGDLDSWYR
SFLPEATISNSSDHDRNQSSRMLYFYKNVISGFAARLTAEEVKAMETKKGFISARVENTL
HLHTTHTPNFLGLHRSSGFWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGK
CELVGATCNNKLIGVRNFFCGKDGSAIDYTGHGTHTASTAAGNFVHGANIFGQANGTAVG
MAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIEDGVDVLSLSFGLGLSQFYDNGIAKATF
EAIRRGIFVSIAAGNSGPNHYTLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALW
QWTDIPSKRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAM
ILMNDELFGDSTLIQRNSLPNVRVSHAVSESIKAYINSTSSPTAALVMKGTVIGGGSAPQ
VVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLS
GVAALLKSAHPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLPADLYAVGAGQVNPSKAN
DPGLVYDIQPDDYIPYLCGLNYTDEQVQSIVDREVQCAKVSSIPEAELNYPSFSIKLGYS
PQTYHRTVTNVGKAKSFYTRQMVAPEGVEITVQPHNISFAAKNQKVTYSVTFTRTGNTNA
SSAQAYLSWVSDKYTVKSPIAISFE*

Transcript Sequence

Transcript ID

orange1.1t03177.1
Transcript Infomation

gene=orange1.1t03177 CDS=1-2238
Sequence

ATGAGTGGTGAAATGTTAAACACGGGAGCCGTTTTAGTTAGTCTCGTTTTTATCATAATC
AATTTCTCCCCAGCAATAATTGCTGTGCGTGCTAGCAATGAAAGTGACAAAGATGGATTA
CAAACCTACATAATTTACGTGCAAAAGCCAGAGCAAGGTGATTTAGACAGCTGGTACCGT
TCATTCTTGCCAGAAGCTACAATCTCGAACTCAAGCGATCACGATCGTAATCAATCATCA
CGGATGTTGTATTTCTATAAGAATGTGATCTCGGGTTTTGCTGCAAGATTGACAGCAGAG
GAAGTAAAGGCCATGGAAACAAAGAAGGGGTTTATATCAGCCCGTGTTGAAAATACATTG
CATCTACACACAACCCACACTCCTAACTTCTTGGGTTTGCATAGAAGTTCAGGATTTTGG
AAAGATTCGAATTTCGGAAAAGGAGTAATTATTGGAGTTTTGGACACAGGCATAACACCT
GGTCATCCTTCATTTAATGACGAAGGCATGCCTCCACCACCAGCAAAGTGGAGAGGAAAA
TGTGAATTAGTAGGGGCGACTTGTAATAATAAGCTAATTGGGGTAAGAAATTTTTTTTGT
GGCAAAGATGGCTCAGCTATTGATTATACTGGGCATGGAACCCATACGGCAAGCACGGCC
GCTGGGAACTTCGTGCATGGTGCAAATATATTTGGCCAAGCCAATGGAACCGCAGTAGGC
ATGGCGCCTTTAGCTCACTTGGCAGTGTACAAAGTTTGTAATCCCAACGTCTATTGTCCC
GAGAGTGCAGTTATTGCAGGAATTGACGCTGCTATTGAAGATGGTGTTGATGTGCTTTCT
CTTTCATTCGGCCTTGGTTTATCGCAATTCTATGATAACGGAATTGCAAAAGCAACATTT
GAAGCAATTCGGAGAGGCATTTTTGTCAGTATTGCGGCAGGGAATTCTGGACCAAATCAT
TATACTTTAGTTAATGACGCTCCATGGATGCTTACTGTGGGAGCAAGCACCATTGACAGA
GGCATAACTATATCGGTTCGGCTCGGAAATCAAGAAACATACGACGGTGAGGCACTTTGG
CAATGGACAGATATCCCTTCCAAGCGATTACCTCTTGTTTATCCTGACGCAAGGAATCAT
TCGACAACAACATTCTGCTCACCGGAAACTTTAAAAAGTGTTGATGTCAAAGGCAAAGTA
GTATTATGCCAAAGAGGTGCATCTGGAGATGATGTCTTGAATGCTGGTGGTGCTGCCATG
ATTTTAATGAATGACGAACTTTTTGGTGACTCTACTTTAATCCAACGTAATTCGCTTCCA
AATGTGCGTGTAAGTCATGCAGTTTCGGAGAGCATAAAAGCCTACATAAATTCAACATCG
TCGCCAACTGCTGCATTAGTGATGAAAGGAACTGTAATTGGCGGAGGATCTGCTCCTCAG
GTTGTTGCTTTCTCTGGAAGAGGACCCAGCAGAATAAGCCCTGGAATCTTGAAGCCAGAC
ATTATTGGACCTGGCCTGAACATTATAGCTGCCTGGAAAACTACTGTGGACCCCCTAGCA
AATAGAGTATACACATTTGACATAGTTTCAGGCACATCAATGGCTTGCCCGCATCTTAGT
GGTGTAGCAGCTTTGCTCAAAAGTGCTCATCCTAACTGGTCACATGCTGCTATAAAATCT
GCCATGATGACTACTGCTGATACAGTAAACCTTGAAGGCAAGCCAATTCTTGATTGCACT
CGTCTTCCAGCTGATCTGTATGCAGTTGGTGCAGGCCAGGTTAACCCATCAAAAGCAAAT
GATCCAGGACTTGTTTACGATATCCAGCCCGATGATTACATTCCTTATTTATGTGGCTTG
AATTACACAGACGAACAGGTGCAAAGCATTGTGGATCGTGAAGTTCAATGCGCAAAAGTA
TCAAGCATACCAGAAGCAGAACTAAATTATCCTTCATTTTCCATCAAATTGGGGTATAGT
CCTCAGACATATCATAGAACAGTAACAAACGTTGGAAAAGCTAAATCATTCTACACTCGC
CAAATGGTTGCCCCTGAAGGAGTGGAGATTACTGTACAACCCCATAATATATCCTTCGCA
GCGAAAAATCAAAAGGTGACATACTCGGTGACATTCACTAGAACAGGAAATACTAATGCA
TCTTCTGCACAAGCGTATTTGAGCTGGGTTTCTGATAAATATACCGTGAAGAGCCCAATT
GCAATCAGTTTTGAATGA