Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Citrus sinensis

CDS Sequence

CDS ID

orange1.1t03173.2
CDS Infomation

gene=orange1.1t03173
Sequence

ATGGAGTCAGATCTTCAACAACATCGCCATCATTTTCTTCACGATCATCAAATTCAGCAC
CATCAGAAGCAGCTAAACTCAGGCTTGACACGTTACCAATCAGCTCCGAGTTCGTATTTC
TCAAGCTTTCTTGACAAAGATGCCTTTGAAGATTTCCTCATGAGGCCTTCGAGTCCCGAG
ACAGAGCGAATCTTTGCAAGATTCTTGTCAAATTCTGCTGGCAACACTGACAACACTGAA
AACACGAGCAACAGCATCATCCCTGAACAAAAGATAATTCAATCTGATCAACAACAGCAA
CAGCAACAGCTTATGCAATTGCAGCAACAGCAACAGCAACAGCAACAACAACAGCAGCAG
CAGCAGAGCTATTACCAAACTCAGCCTCCTCAGCCTCAGTTGCAGCAACAGAATTTTCAG
AGTCAAAATGTTGGCATGGATCGATTTTCAACTCAGCCGATGAAGATGAGTGGTGCTGGT
GCAGGTCCTGGTGGTAATAATTCAAATCTTATTCGCCATAGCAGCTCACCTGCTGGACTT
TTCAGTAACATCACTATTGAAAATGGCTATGTGATGATGAAAGGCATGGGAGATTATGGT
GGTGGAAATAACACAATCAAAAGAGAATCAACATCATATGCTTCTTCAGGGAAGCCACCT
ACTGGTGCAAAGCCGATGAGTCCTATTGTGGAGGTTGATAATAAAACCAGCAATGCCGGG
TTCAAAGAAGGCCATAACGGCAATTATTCAACAGGCTTTCCTATGGATTCTTGGGATGAT
TCTTCAATGATGCCGGAAAATATTGTCAGTGAGGTTAATAGACTTAGAGAAGATGATAGG
ACTCTTTCTGGGTTGAGTGCAACTGAAACTCAGAGTATTGATCTCGGAACCCGGCCTCCT
CCTCTCTTAGCTCATCACTTGAGTTTGCCGAAAGATATAGCTACAATTGAAAAGCTGCTT
CACTATCAAGATTCAGTGCCGTGCAAAATCCGAGCCAAAAGGGGCTGTGCGACCCATCCC
AGAAGCATTGCCGAACGGGTGAGAAGAACCAAAATTAGCGAGCGCATGAGGAAGCTACAA
GAACTTGTACCCAACATGGACAAACAAACAAACACAGCAGACATGCTAGATTTGGCCGTT
GATTACGTTAAAGAACTTCAATGCCAAGTGAAGGCACTCTCGGATAATCGTGCAAAGTGT
ACATGCGCAAAGCAAGAGCAGCAATAG

Peptide Sequence

PEP ID

orange1.1t03173.2
PEP Infomation
Sequence

MESDLQQHRHHFLHDHQIQHHQKQLNSGLTRYQSAPSSYFSSFLDKDAFEDFLMRPSSPE
TERIFARFLSNSAGNTDNTENTSNSIIPEQKIIQSDQQQQQQQLMQLQQQQQQQQQQQQQ
QQSYYQTQPPQPQLQQQNFQSQNVGMDRFSTQPMKMSGAGAGPGGNNSNLIRHSSSPAGL
FSNITIENGYVMMKGMGDYGGGNNTIKRESTSYASSGKPPTGAKPMSPIVEVDNKTSNAG
FKEGHNGNYSTGFPMDSWDDSSMMPENIVSEVNRLREDDRTLSGLSATETQSIDLGTRPP
PLLAHHLSLPKDIATIEKLLHYQDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQ
ELVPNMDKQTNTADMLDLAVDYVKELQCQVKALSDNRAKCTCAKQEQQ*

Transcript Sequence

Transcript ID

orange1.1t03173.2
Transcript Infomation

gene=orange1.1t03173 CDS=716-1942
Sequence

TTAGATAAATAAACCAAAATAAAAAAAAAAAACCCCCACTATATTTATATTTCTGGTCCT
TGTTATTTCCCACCTCCTGAAACTCATCAATCATCATCATCATAAAAATAAAATTATATT
AAAAAAACTATATTTTGACTTCATTTTCCATTTCTTTCTTTTTTTTTCGCTCCCTGAAGA
TTTCACTTTCTCACTGCCAACAACAAAAACACTTTCAGCTTTTTGCTCAATCAATTCAGC
AGTAGCAGAGAGAGAGTGATTTACTAAGTGAGTTTATCGTTGTTGTTGTGAGGGTGTTTT
TGTGTTTTTTTTTTTTATTATTTTTGTTTCCTCTGTTTTGTGATATAACATATCCACCCC
TTTTTTAGTGGTCACTGTTCATTGCTTGTTTTTGGTTATCATTTTTCTTTGAGTGATTCA
GATTCAAGAATATGAAACTGGGTTGCTTTCAGATTTGATGTCCATCCCCTTCCTCTGATC
GAAAATTTGACTTTTATGCTCTCCGTTTCCTCTGTTTTTCTGTTTCCTCTGTTTTTTAAA
GCTTGTTTTCTGACCAAAAGTTGTTCCAATTTTTCAGAAATTAGATCCCAATGAAGAAGA
AGCTTCAAGTTTGATCTGATATTGAAACAACCAAAGAAAAACGGAAAGGGTTTAAAAAAA
AAATCAACTTTTTTGAGCATTATTATTATTAATAACAAGAAGAAGCAAGGTGAAAATGGA
GTCAGATCTTCAACAACATCGCCATCATTTTCTTCACGATCATCAAATTCAGCACCATCA
GAAGCAGCTAAACTCAGGCTTGACACGTTACCAATCAGCTCCGAGTTCGTATTTCTCAAG
CTTTCTTGACAAAGATGCCTTTGAAGATTTCCTCATGAGGCCTTCGAGTCCCGAGACAGA
GCGAATCTTTGCAAGATTCTTGTCAAATTCTGCTGGCAACACTGACAACACTGAAAACAC
GAGCAACAGCATCATCCCTGAACAAAAGATAATTCAATCTGATCAACAACAGCAACAGCA
ACAGCTTATGCAATTGCAGCAACAGCAACAGCAACAGCAACAACAACAGCAGCAGCAGCA
GAGCTATTACCAAACTCAGCCTCCTCAGCCTCAGTTGCAGCAACAGAATTTTCAGAGTCA
AAATGTTGGCATGGATCGATTTTCAACTCAGCCGATGAAGATGAGTGGTGCTGGTGCAGG
TCCTGGTGGTAATAATTCAAATCTTATTCGCCATAGCAGCTCACCTGCTGGACTTTTCAG
TAACATCACTATTGAAAATGGCTATGTGATGATGAAAGGCATGGGAGATTATGGTGGTGG
AAATAACACAATCAAAAGAGAATCAACATCATATGCTTCTTCAGGGAAGCCACCTACTGG
TGCAAAGCCGATGAGTCCTATTGTGGAGGTTGATAATAAAACCAGCAATGCCGGGTTCAA
AGAAGGCCATAACGGCAATTATTCAACAGGCTTTCCTATGGATTCTTGGGATGATTCTTC
AATGATGCCGGAAAATATTGTCAGTGAGGTTAATAGACTTAGAGAAGATGATAGGACTCT
TTCTGGGTTGAGTGCAACTGAAACTCAGAGTATTGATCTCGGAACCCGGCCTCCTCCTCT
CTTAGCTCATCACTTGAGTTTGCCGAAAGATATAGCTACAATTGAAAAGCTGCTTCACTA
TCAAGATTCAGTGCCGTGCAAAATCCGAGCCAAAAGGGGCTGTGCGACCCATCCCAGAAG
CATTGCCGAACGGGTGAGAAGAACCAAAATTAGCGAGCGCATGAGGAAGCTACAAGAACT
TGTACCCAACATGGACAAACAAACAAACACAGCAGACATGCTAGATTTGGCCGTTGATTA
CGTTAAAGAACTTCAATGCCAAGTGAAGGCACTCTCGGATAATCGTGCAAAGTGTACATG
CGCAAAGCAAGAGCAGCAATAGAAGAAAAGGCCTGGGATTATGTACAGAAGCGAAAAAGA
GCTGGGAAAAGGAAGATATAAAGCTTGGTTGTGGGTTCTTTTTTGCACTAAAAAATATGA
AGATGGTAGTGATTAGTATTTAGTGAGCTAGCTATTTATTTCTATTATATACTATGCTGT
GGGGTGTGGAGAAAAATTAAAAAAGAACAGA