Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Citrus sinensis

CDS Sequence

CDS ID

orange1.1t03172.2
CDS Infomation

gene=orange1.1t03172
Sequence

ATGCACGAAGCCGACAATGACCCCGGCTTCGGCCCCGGCTCGCGCTCCGCTGCACAAATG
GCTCAGATGCCGCCGCCGCCAGCGTTAGTCTCTCTCAATGCATTCCGTTCAATGCCTTCC
CCTTCGCCTCGCCGGCTCTCGAGCAATTTCAAAAGGCCGAGCGAGCCGGTCTCGAGAAGA
AATCTGGCGTGGGTGTCGTTAGAAGGCCGGCTTGTGAACGCTGACAAAGCCAGCTCAGCT
CGCGCTGTTAAGGGCGGGCTAAGCCGAGAGGAAGCCGTGGCTTGGGAGCTCTTCTCTCCC
ATTCAGAGGTTTCTGATTGTTGCCGTTATAGGCGTTGCCGCTGCGGAGTCGAAGAAGAAT
CGGCTCATTTCACAGCTTACAAAATCTGTGGAGTTTAGGGATCAGGTGCTATCAAGCATG
CAGCAGAAGCTTGACAGCCTATGTGAACAGTTGTATTACGTTAAGGACCAGCAAGGAATC
ATAGCCAACATGTCATTAAGTGGGAAAGCAGAATCAGCCCAAAGCGAAACTTTTGGCAGC
GACAAAATCAATTTTGTTGATTGTGGTTGTTGGCTCTGTGATCAGCATCATAACCAGCTT
TCAGGGTTTGCGGGTAGTTGTGCTGGAAAAAACTCCAGTGGGGATGAGATGATGCCGTAT
AAAATGATTCATGCAATTGAGTCAGAACAAGAGGAGCGCCGCATGTCTGACCTGTCAGAC
TGGGCATCATCAAGTGGCATATCTGCTGCAGAATTCCAGATGAGCGGCTTTTCAATAGAA
CAAGATATCTGCAATCTAAGGAAGGAGTGTGAAGAGAAAGACACCACCATAAAAGAGCTA
ACCACCTTAGTTCAGTCAACTAATGTCAGAGGTTCAAAGAGGATCTCAGAGTTGGAAGAC
ATCATACTTAGAAAGAACTTTATAATCACAAGACTTAAGAAGGACATGTTGGTCTTAGAA
CAAAAGGTAGTGCAGTTGACAAGGCAACAGAGATCTTCCTCTTCTGCCTCAACCTCAGCC
TCAGACTCGAACTGCTGGCAACTTCCCACCATGGTAAATAATGTTATTTATGATATGGAC
AGTACTACTAGCCCTTCTTCTTCAGATTCAGATTCCCCTTCCAAGAACCGACTTGTAGCG
ATCAAGCAAATAGTAGCCAGCGACCGAGCAGTAGCCACTGACCTACCAGTAGTTCCAGTA
GCGAAATTCCAAGACACCCCTCTTCGAGATTCAGCTGCTAAATTTCAAGACTCCCCTCCT
CAAAGTCCCATGGCTAAATTTCAAGACATCCCTCTTCGAAGGGGACAACTTGCCTCAACA
AGTAGACAGAGATCAGTATCACCAAAAGTCTCAAGTTCTTTGCTGAAGCCAATGGGCAGA
TCCAAAAAGCCTCAGTCAAGTCCTCTTCGAGAAACACCAACAAATCAGAAGTCTAGAACA
ACTTCTTCTCTGAGGCAGAAGCAGTCTCCTGTTAGAGGAGAATTCAAGAAGGCTAGAAGG
CAACCTCTGACGGCATCAAAGGATGCAGCTCCACCGAAAAGATGGGCTTAG

Peptide Sequence

PEP ID

orange1.1t03172.2
PEP Infomation
Sequence

MHEADNDPGFGPGSRSAAQMAQMPPPPALVSLNAFRSMPSPSPRRLSSNFKRPSEPVSRR
NLAWVSLEGRLVNADKASSARAVKGGLSREEAVAWELFSPIQRFLIVAVIGVAAAESKKN
RLISQLTKSVEFRDQVLSSMQQKLDSLCEQLYYVKDQQGIIANMSLSGKAESAQSETFGS
DKINFVDCGCWLCDQHHNQLSGFAGSCAGKNSSGDEMMPYKMIHAIESEQEERRMSDLSD
WASSSGISAAEFQMSGFSIEQDICNLRKECEEKDTTIKELTTLVQSTNVRGSKRISELED
IILRKNFIITRLKKDMLVLEQKVVQLTRQQRSSSSASTSASDSNCWQLPTMVNNVIYDMD
STTSPSSSDSDSPSKNRLVAIKQIVASDRAVATDLPVVPVAKFQDTPLRDSAAKFQDSPP
QSPMAKFQDIPLRRGQLASTSRQRSVSPKVSSSLLKPMGRSKKPQSSPLRETPTNQKSRT
TSSLRQKQSPVRGEFKKARRQPLTASKDAAPPKRWA*

Transcript Sequence

Transcript ID

orange1.1t03172.2
Transcript Infomation

gene=orange1.1t03172 CDS=154-1704
Sequence

GCTTATTCATTCAATTCAAATCTCACCGATCAAAATAAAATTTCCCCAAAACCCAAAAAA
AAATAAAAAATTCAATTTCAATTCAATAATGTCCCTGTAATCACGCTCCTCCTTTTGTTC
TCACTACTCTCTTTTAAAAATTCAAAACCTCTCATGCACGAAGCCGACAATGACCCCGGC
TTCGGCCCCGGCTCGCGCTCCGCTGCACAAATGGCTCAGATGCCGCCGCCGCCAGCGTTA
GTCTCTCTCAATGCATTCCGTTCAATGCCTTCCCCTTCGCCTCGCCGGCTCTCGAGCAAT
TTCAAAAGGCCGAGCGAGCCGGTCTCGAGAAGAAATCTGGCGTGGGTGTCGTTAGAAGGC
CGGCTTGTGAACGCTGACAAAGCCAGCTCAGCTCGCGCTGTTAAGGGCGGGCTAAGCCGA
GAGGAAGCCGTGGCTTGGGAGCTCTTCTCTCCCATTCAGAGGTTTCTGATTGTTGCCGTT
ATAGGCGTTGCCGCTGCGGAGTCGAAGAAGAATCGGCTCATTTCACAGCTTACAAAATCT
GTGGAGTTTAGGGATCAGGTGCTATCAAGCATGCAGCAGAAGCTTGACAGCCTATGTGAA
CAGTTGTATTACGTTAAGGACCAGCAAGGAATCATAGCCAACATGTCATTAAGTGGGAAA
GCAGAATCAGCCCAAAGCGAAACTTTTGGCAGCGACAAAATCAATTTTGTTGATTGTGGT
TGTTGGCTCTGTGATCAGCATCATAACCAGCTTTCAGGGTTTGCGGGTAGTTGTGCTGGA
AAAAACTCCAGTGGGGATGAGATGATGCCGTATAAAATGATTCATGCAATTGAGTCAGAA
CAAGAGGAGCGCCGCATGTCTGACCTGTCAGACTGGGCATCATCAAGTGGCATATCTGCT
GCAGAATTCCAGATGAGCGGCTTTTCAATAGAACAAGATATCTGCAATCTAAGGAAGGAG
TGTGAAGAGAAAGACACCACCATAAAAGAGCTAACCACCTTAGTTCAGTCAACTAATGTC
AGAGGTTCAAAGAGGATCTCAGAGTTGGAAGACATCATACTTAGAAAGAACTTTATAATC
ACAAGACTTAAGAAGGACATGTTGGTCTTAGAACAAAAGGTAGTGCAGTTGACAAGGCAA
CAGAGATCTTCCTCTTCTGCCTCAACCTCAGCCTCAGACTCGAACTGCTGGCAACTTCCC
ACCATGGTAAATAATGTTATTTATGATATGGACAGTACTACTAGCCCTTCTTCTTCAGAT
TCAGATTCCCCTTCCAAGAACCGACTTGTAGCGATCAAGCAAATAGTAGCCAGCGACCGA
GCAGTAGCCACTGACCTACCAGTAGTTCCAGTAGCGAAATTCCAAGACACCCCTCTTCGA
GATTCAGCTGCTAAATTTCAAGACTCCCCTCCTCAAAGTCCCATGGCTAAATTTCAAGAC
ATCCCTCTTCGAAGGGGACAACTTGCCTCAACAAGTAGACAGAGATCAGTATCACCAAAA
GTCTCAAGTTCTTTGCTGAAGCCAATGGGCAGATCCAAAAAGCCTCAGTCAAGTCCTCTT
CGAGAAACACCAACAAATCAGAAGTCTAGAACAACTTCTTCTCTGAGGCAGAAGCAGTCT
CCTGTTAGAGGAGAATTCAAGAAGGCTAGAAGGCAACCTCTGACGGCATCAAAGGATGCA
GCTCCACCGAAAAGATGGGCTTAGAAAGTTGTCAAAGTTATGGTGCAGCTGGTACATACT
AATAGGTTTAAGCCGGTCTGCTGTGAATGTAATATCATTATTGTTGTTAGATTTCCAGCT
CTGCAGATTTTATATGTAATAGATTTTGAGGCAGCTTCCTCATATAAATCAAAATGATCA
ATTTT