Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Citrus sinensis

CDS Sequence

CDS ID

orange1.1t03171.1
CDS Infomation

gene=orange1.1t03171
Sequence

ATGGATAAAAACCAACAGCAACAATCCGATTCTCCAACGCGGGACCCCAAATCCTACACC
GTTCTGTCAATCGACTGCCTCAAGGGCACCTCAAAAGCCGACGAATGGACGGCCGACATG
CTCCAGACGGGCGACATCGTCGAGGAATTCACGATAGGAGGCGGCTCGGGTTTAGGATCG
GGATCCGGCTCTTGTCGGACGTACAAGGCGCCGTTCAAGAACGGGAGGAGCGGAGTTCAG
AAGATTCTGCACGGCTCGTTCAAGAACAAGGAGACGTCGATTCTGGTCCGGGTGAGGCGA
GGCGCCGAAGAGTTCGCCGAGCTGCAGGCGTGCATCGTGCCGGAGTCGGGCGGGAGGAGG
AACTGTTACATGCTGAGGTCCATTACGGATCCGAATTACGCCGCCGGGTTCACTGATCGG
ACCGAGGCCGACTGCCTCGAGTTGCTAGCTTCAAGGAGCTCCAGGATTGTAAGTGCATTA
GCTAGGGCTAGGCTTCAAGAAGGATATGTCTCGTATCCTTGGGAAAGGAGGAAGCAGGAG
GTTCTATCTGTTCCCAATTCAAGCTGCTTTCTTTCTATGCTTCTCCTTCCAAAAGCTTCG
GATGTAGTGGCTTCTCGCTACAATGATGTGGAAGACACTCTTGCCCGGGCAAATGCCTGG
CTCAATGCGTCTCAGGCCACTGGGGTTCCGATTGTTTTCATGAACATCCAGACAGAGTCC
CTGCTTACCAAGATCTCTGGAGAGACAGCCTCCTCCACTGTTAATTCGGGGTCATTATCT
GACTTGTCTAATGTTGCAAATGCCAGTCTGTATGGCTTTGAGGATTATCATGGCGTTGAC
CTCGGTGTCGTTAGAGCTGTTCGGCTTTGGTATGCTCCAGTTGGGGGAGAGTTAGCAATT
GAGATCAAACTAAAGGAAGGTGATTCCAAGCTTGGGTTTGCCATTAGTCGCACTGAAGAG
GGATTTATCTACATTTCCACGGTTATTGATGATGACGAAAATATACCTTCTACAAGGTCA
GGGCTCAGCATTCTTTACAAAGAAGCAGTAAGTGCTTCTAAGCTGCTGGTAGTCTCCAGA
GTGTCAAACCAAAAAGTTCTTCCATGGATAGTTTCCTCAACAGGAGCAGTTAGATGTTTC
GACACAGTTTCTCTCAGCCAGAAGCTCTCATTGCACCGGCATGCCAAAGTTCCTATTCTC
TTACATGTGTTCTTATGGGACCAAGCACTGGCTTCAACAAGCGGGAGCAGCACTCGATTA
AGGGCTGCCTCCCTGCCTACAATGCCATTACCCTCTGAAGTTCGATTGGCACGTCAACCT
AATGAGAATCAGATACAACCTCTGCCAGCTGAAGTTCCAAATGACAATGAAATAAGAAAC
AATAGAGAGCGCAAGCTTGAGCGCGACACAGCTGGGGAGGTATCTTTTAGATTCCATGAT
TTTGCACTTAAAAACAACTGGGTGTGA

Peptide Sequence

PEP ID

orange1.1t03171.1
PEP Infomation
Sequence

MDKNQQQQSDSPTRDPKSYTVLSIDCLKGTSKADEWTADMLQTGDIVEEFTIGGGSGLGS
GSGSCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVRRGAEEFAELQACIVPESGGRR
NCYMLRSITDPNYAAGFTDRTEADCLELLASRSSRIVSALARARLQEGYVSYPWERRKQE
VLSVPNSSCFLSMLLLPKASDVVASRYNDVEDTLARANAWLNASQATGVPIVFMNIQTES
LLTKISGETASSTVNSGSLSDLSNVANASLYGFEDYHGVDLGVVRAVRLWYAPVGGELAI
EIKLKEGDSKLGFAISRTEEGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSR
VSNQKVLPWIVSSTGAVRCFDTVSLSQKLSLHRHAKVPILLHVFLWDQALASTSGSSTRL
RAASLPTMPLPSEVRLARQPNENQIQPLPAEVPNDNEIRNNRERKLERDTAGEVSFRFHD
FALKNNWV*

Transcript Sequence

Transcript ID

orange1.1t03171.1
Transcript Infomation

gene=orange1.1t03171 CDS=1-1467
Sequence

ATGGATAAAAACCAACAGCAACAATCCGATTCTCCAACGCGGGACCCCAAATCCTACACC
GTTCTGTCAATCGACTGCCTCAAGGGCACCTCAAAAGCCGACGAATGGACGGCCGACATG
CTCCAGACGGGCGACATCGTCGAGGAATTCACGATAGGAGGCGGCTCGGGTTTAGGATCG
GGATCCGGCTCTTGTCGGACGTACAAGGCGCCGTTCAAGAACGGGAGGAGCGGAGTTCAG
AAGATTCTGCACGGCTCGTTCAAGAACAAGGAGACGTCGATTCTGGTCCGGGTGAGGCGA
GGCGCCGAAGAGTTCGCCGAGCTGCAGGCGTGCATCGTGCCGGAGTCGGGCGGGAGGAGG
AACTGTTACATGCTGAGGTCCATTACGGATCCGAATTACGCCGCCGGGTTCACTGATCGG
ACCGAGGCCGACTGCCTCGAGTTGCTAGCTTCAAGGAGCTCCAGGATTGTAAGTGCATTA
GCTAGGGCTAGGCTTCAAGAAGGATATGTCTCGTATCCTTGGGAAAGGAGGAAGCAGGAG
GTTCTATCTGTTCCCAATTCAAGCTGCTTTCTTTCTATGCTTCTCCTTCCAAAAGCTTCG
GATGTAGTGGCTTCTCGCTACAATGATGTGGAAGACACTCTTGCCCGGGCAAATGCCTGG
CTCAATGCGTCTCAGGCCACTGGGGTTCCGATTGTTTTCATGAACATCCAGACAGAGTCC
CTGCTTACCAAGATCTCTGGAGAGACAGCCTCCTCCACTGTTAATTCGGGGTCATTATCT
GACTTGTCTAATGTTGCAAATGCCAGTCTGTATGGCTTTGAGGATTATCATGGCGTTGAC
CTCGGTGTCGTTAGAGCTGTTCGGCTTTGGTATGCTCCAGTTGGGGGAGAGTTAGCAATT
GAGATCAAACTAAAGGAAGGTGATTCCAAGCTTGGGTTTGCCATTAGTCGCACTGAAGAG
GGATTTATCTACATTTCCACGGTTATTGATGATGACGAAAATATACCTTCTACAAGGTCA
GGGCTCAGCATTCTTTACAAAGAAGCAGTAAGTGCTTCTAAGCTGCTGGTAGTCTCCAGA
GTGTCAAACCAAAAAGTTCTTCCATGGATAGTTTCCTCAACAGGAGCAGTTAGATGTTTC
GACACAGTTTCTCTCAGCCAGAAGCTCTCATTGCACCGGCATGCCAAAGTTCCTATTCTC
TTACATGTGTTCTTATGGGACCAAGCACTGGCTTCAACAAGCGGGAGCAGCACTCGATTA
AGGGCTGCCTCCCTGCCTACAATGCCATTACCCTCTGAAGTTCGATTGGCACGTCAACCT
AATGAGAATCAGATACAACCTCTGCCAGCTGAAGTTCCAAATGACAATGAAATAAGAAAC
AATAGAGAGCGCAAGCTTGAGCGCGACACAGCTGGGGAGGTATCTTTTAGATTCCATGAT
TTTGCACTTAAAAACAACTGGGTGTGA