Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Citrus sinensis

CDS Sequence

CDS ID

orange1.1t03154.1
CDS Infomation

gene=orange1.1t03154
Sequence

ATGGCTGCGGCAACTACTGCTACACAAATCTTTCAAAATCACGACAGTGGCAACGAAAAC
AACAATAATAATGAAGTTAGCAGACAAGAAATACAAGCTGCCATTGCTAAAGCAGTGGAG
CTCAGAGCCCTTCATTCAGCTCTGATGCAAGGAAATAGCCCTGCTGCTAATAACAGATTC
AATTCTTCTTCTACTTCCCCGGTTTCTCGCCCTGTTTCTCAGTTCTCTGCTCATGATTAC
CCTGTTTTCACTCCTAGTTATGAAGATGAACCAGTAACCGGGTATCATCAGATTCACTCA
AAGAATCCATCGGGAACCTGGGATGAGTATGCATTGGATGGAGGCAATGGCAATGAATCA
ACTTTATCTGATTATAAGAAAGAAATTTTATCTTCAAAGAAAGGATTGCCTTCTGGTTTG
GCCAGTTTCGAGTCCCATTTCTGCCCAGCTGATGACCAAAAATCAGTTACTGGTTCCTGC
ACAAACCACATCACTGTGCTACAAACATCACCAGGAACTGAAGTTTACAAGTCAAGCAGA
AGAAACAGCTTGGGGGACTTCAAATCAGTATCCTCTTGCAATAGATGCAAGCCGGCAGTT
ATAACAAGTGAATCCGAAAATGTCGTTAGAAGCATCAGGAGTTCTAACATTGTTGTGCCC
TTGACAGACTCTCATTCAATGGTTCACTCGCAGCCTAAGAGTCGTGGGGGAGTGCTGTCA
TGGTTGTTTCCGCGGTTAAAGAAGAAGCACAAGAGTGAAAACTCCCCTAACCGGACAGAA
TCCGAGGAAGTTTCACAGGTTTTTAAGGACTTGGGGATATTGTCAATAGAGACATTGAAG
AGGGAACTTATGGAAGCAAATGAGAGTAGAGACGCAGCATTAATGGAAGTTTCAGAGATG
AGATCTTCATTTGGGGAGCTAAGGCAAAAGCTGGAGTACTTGGAGGCTTATTGTGAAGAG
CTGAAGAAAGCCTTGAGACAAGCAGCAACACATGCAAAGGACTCTCATCAAGTTAATGAA
AAGCTTGGGAATTTTCCCCGAAGAGGGAAGTCTATTGATGGAAATGGAGAGAGTTTGATG
CCGGTTAGTGAAGAAGCAATGGTGGAAGGTTTCTTGCAGATTGTTTCAGAAGCAAGATTG
TCGGTGAAGCAATTTTGCAAGACACTTGTTGCACAGATTGAAGAGACGGACCACACTCTA
ATGGATAATTTGAATGTGCTGCTTCAACCGTATAAATTGTCACTAAGTTCAAAATACTCC
AAGGCTGTTTTGTACCACTTGGAAGCCATGATAAACCAATCACTCTACCAGGACTTTGAG
AATTGTGTGTTTCAGAAAAATGGCTCACCGAAGATTTTAGATCCACAGCAAGATCGCCAA
GCACAGTTTGCGTCGTTTGTTTCACTAAGAAATCTAAGCTGGAATGAAGTGTTGAGGAAG
GGGACTAAATTCTATAGTGAAGAATTTAGCAAGTTCTGCGACCAAAAAATGAGTTGCATT
ATCACGACACTGAATTGGACTAGGCCATGGCCTGAGCAATTGCTGCAGGCTTTCTTTGTT
GCAGCTAAATGCATTTGGTTACTTCATTTGCTTGCATTTTCATTCAATCCACCATTGGGA
ATCTTGAGGGTCGAAGATAATAGAAGCTTTGATGCACATTACATGGAAGATATGTTGATG
GATAGGCAAAAGTCACACGGTTCGAGCCGAGTTAAAATCATGGTGATGCCTGGGTTTTAT
GTTCAAGATAAGGTTCTGAGATGTAAGGTTCTTTGCAGGTATAAATCAGCAGCCTAA

Peptide Sequence

PEP ID

orange1.1t03154.1
PEP Infomation
Sequence

MAAATTATQIFQNHDSGNENNNNNEVSRQEIQAAIAKAVELRALHSALMQGNSPAANNRF
NSSSTSPVSRPVSQFSAHDYPVFTPSYEDEPVTGYHQIHSKNPSGTWDEYALDGGNGNES
TLSDYKKEILSSKKGLPSGLASFESHFCPADDQKSVTGSCTNHITVLQTSPGTEVYKSSR
RNSLGDFKSVSSCNRCKPAVITSESENVVRSIRSSNIVVPLTDSHSMVHSQPKSRGGVLS
WLFPRLKKKHKSENSPNRTESEEVSQVFKDLGILSIETLKRELMEANESRDAALMEVSEM
RSSFGELRQKLEYLEAYCEELKKALRQAATHAKDSHQVNEKLGNFPRRGKSIDGNGESLM
PVSEEAMVEGFLQIVSEARLSVKQFCKTLVAQIEETDHTLMDNLNVLLQPYKLSLSSKYS
KAVLYHLEAMINQSLYQDFENCVFQKNGSPKILDPQQDRQAQFASFVSLRNLSWNEVLRK
GTKFYSEEFSKFCDQKMSCIITTLNWTRPWPEQLLQAFFVAAKCIWLLHLLAFSFNPPLG
ILRVEDNRSFDAHYMEDMLMDRQKSHGSSRVKIMVMPGFYVQDKVLRCKVLCRYKSAA*

Transcript Sequence

Transcript ID

orange1.1t03154.1
Transcript Infomation

gene=orange1.1t03154 CDS=629-2425
Sequence

ATTAATGGTGAGTGTAAAAAGATTTGTTTTACTAATAAGATTTTGTGAGTCTTCGAAACC
CCGAATGCACATTACTCTCAATCTACAAGAACTTTTTCCTTTTTAGGTACTACAAAAAGT
CTAGGATTCAATTCACGGTCATATCACAACTTATAATCAAAAAGTTTTGAAACCTCTCGA
TATTTCTTGAAAGGCTAGGGTGGTCCAAGAAATTTAGTTTTAGAAAAATTCATGGGCATT
TTAGGAAACTGGCAAAGCCATGAATTGTTCCCTCTCTCTTTTCCTTCACATGCTGTCATT
CTATTAATCCATTTTGAAACTTCTCTCTCTTTCTTACTCACATGCTCTCATTCTATTAAT
TCCTTGAAGACAAAGACAAAAGAAAAGTTCATTGGAGTTTACATATATACCTCACATTCA
TTTTCATTTCCATTTTCTTATTCATTTCCCCATCTCTCACAATTTTCTGGCTCTCCAAGA
TTCTAACAGTGGATATCATCTTAATCTCTGCGAATCACATCCAACCGTTGGATACCCAAA
TTTTACAACAATATCTAGTCGCATACTTTGTTCTATTCTCTGTTGTGTATTATTTTGTTT
ATGTGCAACTCTGTTTTATGCTCTGTTCATGGCTGCGGCAACTACTGCTACACAAATCTT
TCAAAATCACGACAGTGGCAACGAAAACAACAATAATAATGAAGTTAGCAGACAAGAAAT
ACAAGCTGCCATTGCTAAAGCAGTGGAGCTCAGAGCCCTTCATTCAGCTCTGATGCAAGG
AAATAGCCCTGCTGCTAATAACAGATTCAATTCTTCTTCTACTTCCCCGGTTTCTCGCCC
TGTTTCTCAGTTCTCTGCTCATGATTACCCTGTTTTCACTCCTAGTTATGAAGATGAACC
AGTAACCGGGTATCATCAGATTCACTCAAAGAATCCATCGGGAACCTGGGATGAGTATGC
ATTGGATGGAGGCAATGGCAATGAATCAACTTTATCTGATTATAAGAAAGAAATTTTATC
TTCAAAGAAAGGATTGCCTTCTGGTTTGGCCAGTTTCGAGTCCCATTTCTGCCCAGCTGA
TGACCAAAAATCAGTTACTGGTTCCTGCACAAACCACATCACTGTGCTACAAACATCACC
AGGAACTGAAGTTTACAAGTCAAGCAGAAGAAACAGCTTGGGGGACTTCAAATCAGTATC
CTCTTGCAATAGATGCAAGCCGGCAGTTATAACAAGTGAATCCGAAAATGTCGTTAGAAG
CATCAGGAGTTCTAACATTGTTGTGCCCTTGACAGACTCTCATTCAATGGTTCACTCGCA
GCCTAAGAGTCGTGGGGGAGTGCTGTCATGGTTGTTTCCGCGGTTAAAGAAGAAGCACAA
GAGTGAAAACTCCCCTAACCGGACAGAATCCGAGGAAGTTTCACAGGTTTTTAAGGACTT
GGGGATATTGTCAATAGAGACATTGAAGAGGGAACTTATGGAAGCAAATGAGAGTAGAGA
CGCAGCATTAATGGAAGTTTCAGAGATGAGATCTTCATTTGGGGAGCTAAGGCAAAAGCT
GGAGTACTTGGAGGCTTATTGTGAAGAGCTGAAGAAAGCCTTGAGACAAGCAGCAACACA
TGCAAAGGACTCTCATCAAGTTAATGAAAAGCTTGGGAATTTTCCCCGAAGAGGGAAGTC
TATTGATGGAAATGGAGAGAGTTTGATGCCGGTTAGTGAAGAAGCAATGGTGGAAGGTTT
CTTGCAGATTGTTTCAGAAGCAAGATTGTCGGTGAAGCAATTTTGCAAGACACTTGTTGC
ACAGATTGAAGAGACGGACCACACTCTAATGGATAATTTGAATGTGCTGCTTCAACCGTA
TAAATTGTCACTAAGTTCAAAATACTCCAAGGCTGTTTTGTACCACTTGGAAGCCATGAT
AAACCAATCACTCTACCAGGACTTTGAGAATTGTGTGTTTCAGAAAAATGGCTCACCGAA
GATTTTAGATCCACAGCAAGATCGCCAAGCACAGTTTGCGTCGTTTGTTTCACTAAGAAA
TCTAAGCTGGAATGAAGTGTTGAGGAAGGGGACTAAATTCTATAGTGAAGAATTTAGCAA
GTTCTGCGACCAAAAAATGAGTTGCATTATCACGACACTGAATTGGACTAGGCCATGGCC
TGAGCAATTGCTGCAGGCTTTCTTTGTTGCAGCTAAATGCATTTGGTTACTTCATTTGCT
TGCATTTTCATTCAATCCACCATTGGGAATCTTGAGGGTCGAAGATAATAGAAGCTTTGA
TGCACATTACATGGAAGATATGTTGATGGATAGGCAAAAGTCACACGGTTCGAGCCGAGT
TAAAATCATGGTGATGCCTGGGTTTTATGTTCAAGATAAGGTTCTGAGATGTAAGGTTCT
TTGCAGGTATAAATCAGCAGCCTAAATGAAGAGCCAAGAAAGTTTGTAACTATATGTGAA
ATTGATGTTTGAATAAATTGTCAGATGGGTTTTATTTTTTTATTTTTTTTCTATTGCTAG
CATAAATTGACTTGTAGTTGTTAGGGGATTAGGTGGAATTTTGAAGTGATAGAATTGGAA
TCCTATATAGGATTTTTCTTTTTTTAAATGATTGAAGTATACAATTTCTAATAG