Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Citrus sinensis

CDS Sequence

CDS ID

orange1.1t03149.1
CDS Infomation

gene=orange1.1t03149
Sequence

ATGGCGCAAAGCAAAGAAAATATTGTAATGTTTCCATTCATGGCACAAGGCCATATCATT
CCCTTTCTAGCCTTGGCCCTTCACATAGAACAAAGACACAAAAATTACAGCATAACCTTT
GTCAGCACCCCTTTAAACATCAAGAAACTAAAATCATCTCTCCCTCCAAACTCCTCCATT
GACTTGCATGAAATTCCTTTCAATAGCTCATCTCATGGCCTTCCTCCAAATTCTGAAAAT
TGTGATGTCCTTCCTTACAATCTTGTCATTCATCTCCTTAGAGCTTCAACTTCTTTGAAA
CCTGCTTTTAAAGAAGTGATTTCTAGTCTCATAAATCAAGGCCGGCCTCCACTTTGCATC
ATTGCTGATATTTTCTTTGGGTGGACTTGTGGTGTTGCCAAGGAGCTTAATGTGTTTCAT
GCAATTTTTAGTGGTTCTGGTAGCTATGGCTTGGCTTGTTACTATTCCTTTTGGACAAAT
CTTCCTCACAACAAAGTTACTTCAGATGAGTTTGTGTTGCCAGATTTTGAAGAGGCTTCA
AGGATTCATAAATCCCAATTAGCTTTGAATATGTTAGAGGCTGATGGGACAGATTCTTGG
TCTTTGTTTCAAGGTGAAAATTTTCCTGCGTGGGTGAATTCTAACGGGATTTTGTGTAAT
ACCATTGAAGAGTTTGATCAGATTGGATTCATTTACTTGAAGAGAAAGCTAGGCTTGTCA
GTTTGGCCAGTGGGGCCAATCTTGCTATCATTGGAAAATAGAGCAAACGCAGGCAAAGAA
GGCGGAACATCCATAAAGTTTTGCAAGGAATGGCTTGACTCAAAGGATGAGAATTCAGTT
TTGTATATATCTTTTGGGTCAATGAACACTATTAGTGCATCACAAATGATGCAATTGGCT
ATGGCATTGGAGGCTAGTGGGAAAAACTTCATTTGGGTCGTTAGGCCACCAATTGGATTT
GACATAAATTCAGAATTTAGAGCCAGTGAATGGTTACCTGAAGGGTTTGAGGAGAGAATT
AGAGATTCAAAAAGGGGTCTTTTGATGAAAAATTGGGCACCCCAATTGGAGGTTTTGTCA
CACAGAGCTACATGTGCATTTTTGAGTCATTGTGGATGGAACTCAGTACTTGAAGCTTTG
ATTCATGGGGTGCCAATAATTGGATGGCCTATGGCTGCTGAGCAATTTTTCAATGCCAAG
TTTTTAGAACAAGAGATGGGGGTTTGTGTGGAGGTTGCTAGAGGGAAGACTTGTGAAGTA
AAACATGAAGATGTGGTTGCAAAAATTGAATTGGTGATGAATGAAACAGACAAAGGGAAA
GAAATTAGAAGAAAAGTTTCTGAAGTTAGGGAGATGATCAAGAATGCCATGAAAGATGAA
GAAGGTTGCAGGGGATCTTCAGTCAAAGCCATGGATGATTTTCTCAGCGCTGCAATATCA
ATGAAGAACAAGATCAATGGAAGAGTCAACAATGGAGCTTGA

Peptide Sequence

PEP ID

orange1.1t03149.1
PEP Infomation
Sequence

MAQSKENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKSSLPPNSSI
DLHEIPFNSSSHGLPPNSENCDVLPYNLVIHLLRASTSLKPAFKEVISSLINQGRPPLCI
IADIFFGWTCGVAKELNVFHAIFSGSGSYGLACYYSFWTNLPHNKVTSDEFVLPDFEEAS
RIHKSQLALNMLEADGTDSWSLFQGENFPAWVNSNGILCNTIEEFDQIGFIYLKRKLGLS
VWPVGPILLSLENRANAGKEGGTSIKFCKEWLDSKDENSVLYISFGSMNTISASQMMQLA
MALEASGKNFIWVVRPPIGFDINSEFRASEWLPEGFEERIRDSKRGLLMKNWAPQLEVLS
HRATCAFLSHCGWNSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGKTCEV
KHEDVVAKIELVMNETDKGKEIRRKVSEVREMIKNAMKDEEGCRGSSVKAMDDFLSAAIS
MKNKINGRVNNGA*

Transcript Sequence

Transcript ID

orange1.1t03149.1
Transcript Infomation

gene=orange1.1t03149 CDS=34-1515
Sequence

CAAACTTCTCTTCAGCATCATCATCATTCAGCAATGGCGCAAAGCAAAGAAAATATTGTA
ATGTTTCCATTCATGGCACAAGGCCATATCATTCCCTTTCTAGCCTTGGCCCTTCACATA
GAACAAAGACACAAAAATTACAGCATAACCTTTGTCAGCACCCCTTTAAACATCAAGAAA
CTAAAATCATCTCTCCCTCCAAACTCCTCCATTGACTTGCATGAAATTCCTTTCAATAGC
TCATCTCATGGCCTTCCTCCAAATTCTGAAAATTGTGATGTCCTTCCTTACAATCTTGTC
ATTCATCTCCTTAGAGCTTCAACTTCTTTGAAACCTGCTTTTAAAGAAGTGATTTCTAGT
CTCATAAATCAAGGCCGGCCTCCACTTTGCATCATTGCTGATATTTTCTTTGGGTGGACT
TGTGGTGTTGCCAAGGAGCTTAATGTGTTTCATGCAATTTTTAGTGGTTCTGGTAGCTAT
GGCTTGGCTTGTTACTATTCCTTTTGGACAAATCTTCCTCACAACAAAGTTACTTCAGAT
GAGTTTGTGTTGCCAGATTTTGAAGAGGCTTCAAGGATTCATAAATCCCAATTAGCTTTG
AATATGTTAGAGGCTGATGGGACAGATTCTTGGTCTTTGTTTCAAGGTGAAAATTTTCCT
GCGTGGGTGAATTCTAACGGGATTTTGTGTAATACCATTGAAGAGTTTGATCAGATTGGA
TTCATTTACTTGAAGAGAAAGCTAGGCTTGTCAGTTTGGCCAGTGGGGCCAATCTTGCTA
TCATTGGAAAATAGAGCAAACGCAGGCAAAGAAGGCGGAACATCCATAAAGTTTTGCAAG
GAATGGCTTGACTCAAAGGATGAGAATTCAGTTTTGTATATATCTTTTGGGTCAATGAAC
ACTATTAGTGCATCACAAATGATGCAATTGGCTATGGCATTGGAGGCTAGTGGGAAAAAC
TTCATTTGGGTCGTTAGGCCACCAATTGGATTTGACATAAATTCAGAATTTAGAGCCAGT
GAATGGTTACCTGAAGGGTTTGAGGAGAGAATTAGAGATTCAAAAAGGGGTCTTTTGATG
AAAAATTGGGCACCCCAATTGGAGGTTTTGTCACACAGAGCTACATGTGCATTTTTGAGT
CATTGTGGATGGAACTCAGTACTTGAAGCTTTGATTCATGGGGTGCCAATAATTGGATGG
CCTATGGCTGCTGAGCAATTTTTCAATGCCAAGTTTTTAGAACAAGAGATGGGGGTTTGT
GTGGAGGTTGCTAGAGGGAAGACTTGTGAAGTAAAACATGAAGATGTGGTTGCAAAAATT
GAATTGGTGATGAATGAAACAGACAAAGGGAAAGAAATTAGAAGAAAAGTTTCTGAAGTT
AGGGAGATGATCAAGAATGCCATGAAAGATGAAGAAGGTTGCAGGGGATCTTCAGTCAAA
GCCATGGATGATTTTCTCAGCGCTGCAATATCAATGAAGAACAAGATCAATGGAAGAGTC
AACAATGGAGCTTGA