Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Citrus sinensis

CDS Sequence

CDS ID

orange1.1t03148.6
CDS Infomation

gene=orange1.1t03148
Sequence

ATGGACGAGCTCTTGACGCCGATCATGGACGAGGAGTCGCCAAGGCTCCTGCAGACCATT
TCGGAGCACGGCGGATACGCCTACGTCGGCATGGCGGCTCAGGCGGCGGCGGACATACGC
GCGGCGGAGGCGGCGCGTGACTTGGCGTGGGAGCAGCTGCATTCGGGGCCATGGCACTCG
GTGTTACCGGTGTGGCGCGACGCGTACTCGATGGCGTGCTTGCACGGGGCGAAGTACCAT
TATCGGAACGGCGAGTTTAAGGAGGCGCTTAGGGTTTTGGATATGGGAGTGCTCATGGGC
GGGCCGGTTTTGCGAAAGGATTTGGATTCTGCTATCGAAACATTGTCGTTGAAAGCTAGA
GAAGGTGAAAATGAGCGTTTTGGTGAAAGAGAAGCTAATCGATTAGTCTCTGAGGAGTTT
AATACAGCTAAGGCGCTTCAGGTTTTGCCAAATAGGTCTCTATCTTGTAAGCTTGTGGTG
AAGAGGTCTGCTTTATCGCTGGAGGGATTTTTAAGTGAATATTTCCTATCAGGTTCTCCG
GTTATAATTACTGATTGTATGGCACATTGGCCAGCTAGGACAAACTGGAATGACTTGGAT
TACCTTAAAAGAGTTGCTGGTGACCGCACAGTTCCAGTTGAGGTTGGTAAAAACTATTTG
TGCCAAGATTGGAAGCAAGAGCTGATCCCCTTCTCCCAATTTCTTGAAAGGATTCAATCG
AATGGCAGTTCTGCTAGTGTCCCTACTTATCTTGCTCAGCATCAATTATTTGATCAGATT
AACGAACTACGGAATGACATTTGTATTCCTGACTATTGTTTTGTTGGTGGTGGGGAGTTG
AGGTCTCTTAATGCTTGGTTTGGTCCAGCCGGAACTGTGACGCCCCTGCATCATGATCCA
CACCATAATATACTTGCTCAGGTATCTCTGTATTGTGCATTATCTCAACGTACATCTACT
TTTAGGAGGTTGTGGTTAAACTCTTTACTCCTGGTCTTCTGTTATTATGTCTGCCATTAA

Peptide Sequence

PEP ID

orange1.1t03148.6
PEP Infomation
Sequence

MDELLTPIMDEESPRLLQTISEHGGYAYVGMAAQAAADIRAAEAARDLAWEQLHSGPWHS
VLPVWRDAYSMACLHGAKYHYRNGEFKEALRVLDMGVLMGGPVLRKDLDSAIETLSLKAR
EGENERFGEREANRLVSEEFNTAKALQVLPNRSLSCKLVVKRSALSLEGFLSEYFLSGSP
VIITDCMAHWPARTNWNDLDYLKRVAGDRTVPVEVGKNYLCQDWKQELIPFSQFLERIQS
NGSSASVPTYLAQHQLFDQINELRNDICIPDYCFVGGGELRSLNAWFGPAGTVTPLHHDP
HHNILAQVSLYCALSQRTSTFRRLWLNSLLLVFCYYVCH*

Transcript Sequence

Transcript ID

orange1.1t03148.6
Transcript Infomation

gene=orange1.1t03148 CDS=83-1102
Sequence

CTCGCTTCAATTTTCAAACTTTCAATTTCTTGCAATTTAGTCCAAAAATTTTCACGCGTA
CACGCGTCCACTCGACAAACTAATGGACGAGCTCTTGACGCCGATCATGGACGAGGAGTC
GCCAAGGCTCCTGCAGACCATTTCGGAGCACGGCGGATACGCCTACGTCGGCATGGCGGC
TCAGGCGGCGGCGGACATACGCGCGGCGGAGGCGGCGCGTGACTTGGCGTGGGAGCAGCT
GCATTCGGGGCCATGGCACTCGGTGTTACCGGTGTGGCGCGACGCGTACTCGATGGCGTG
CTTGCACGGGGCGAAGTACCATTATCGGAACGGCGAGTTTAAGGAGGCGCTTAGGGTTTT
GGATATGGGAGTGCTCATGGGCGGGCCGGTTTTGCGAAAGGATTTGGATTCTGCTATCGA
AACATTGTCGTTGAAAGCTAGAGAAGGTGAAAATGAGCGTTTTGGTGAAAGAGAAGCTAA
TCGATTAGTCTCTGAGGAGTTTAATACAGCTAAGGCGCTTCAGGTTTTGCCAAATAGGTC
TCTATCTTGTAAGCTTGTGGTGAAGAGGTCTGCTTTATCGCTGGAGGGATTTTTAAGTGA
ATATTTCCTATCAGGTTCTCCGGTTATAATTACTGATTGTATGGCACATTGGCCAGCTAG
GACAAACTGGAATGACTTGGATTACCTTAAAAGAGTTGCTGGTGACCGCACAGTTCCAGT
TGAGGTTGGTAAAAACTATTTGTGCCAAGATTGGAAGCAAGAGCTGATCCCCTTCTCCCA
ATTTCTTGAAAGGATTCAATCGAATGGCAGTTCTGCTAGTGTCCCTACTTATCTTGCTCA
GCATCAATTATTTGATCAGATTAACGAACTACGGAATGACATTTGTATTCCTGACTATTG
TTTTGTTGGTGGTGGGGAGTTGAGGTCTCTTAATGCTTGGTTTGGTCCAGCCGGAACTGT
GACGCCCCTGCATCATGATCCACACCATAATATACTTGCTCAGGTATCTCTGTATTGTGC
ATTATCTCAACGTACATCTACTTTTAGGAGGTTGTGGTTAAACTCTTTACTCCTGGTCTT
CTGTTATTATGTCTGCCATTAAGATTTCAAATATTGCTAAACTCTTTAACTTTTTTGCAG
TACCTGTGTAACAACTTGTCATTCTTTTCATAGATTAAGTGGCCAACGCCTGAGATCAAA
TATAAGCACGTATTCCTGTTCAATTAGCCGGTGGATTCTTGTTCTTTTTCCTATACTTTC
TCTCCCCCAAAACCCCCCGCCCCCCCAGGCCAAAATATATTCACCCTTTCATCAAACCCT
GTGGCCTCACTATTGTCCCCATAGATATGGATAGATTAAATGCTGCTGGATCAGACGGCT
GTGGGCAGCGAATTATTTAATTATCTTGTTAGTACTAATTTGTGTTTATTCGCATCCTTG
GATAAGTGCTACAGCTTCATTTTTTTCAAATTTTATGTGCTTCATAAATCCAACAATATG
CTAGGTCTATGATTAGTTTTCTTATTGGAGATCATTTACTGGATAAGTTCCATTCCTGAA
TATGCCTGTCCGGTGTTTCTTGCATACTTCATTAATAGACATGTGTGGATACTTGTGTGG
TTTGTTTATACGATTACCATATCTACTGATTCAGGCTTTTTTTGGCTGAAACAATCCATT
CCTTTGCCTCTTCATTTTCAGGTTGTTGGTAAAAAGTATATTAGACTTTACCCAGCTTCA
TTGTCAGAGGAACTTTATCCATACTCCGAAACCATGCTTTGCAATTCCAGCCAGGTAGCT
ATTAACTTGAATTGTAAGACTTAGTCTACAGTAATATGCCTGTTCTTTGTATACTAATGC
TGTAATTGTGAATCTAAAAAATATCCTCCTGCTCTATTTGAAGGTTGATCTAGACAACAT
AGATGAGACAAAGTTTCCAAAGGTGCGTGACCTAGAATTTTTTGACTGTATATTAGACGA
AGGTGAAATGCTTTACATCCCACCCAAATGGTGGCACTACGTACGCTCTCTTTCTATAAG
TTTTTCAGTTAGCTTTTGGTGGAGTGATGGTGGAAGTTCAACTGCATACTCGTAACAAAT
CGTTTATATGCGTGCTAAGTTGTTTCTGATAGAGATCTGGGTACAACAATATTAGATATA
ATCTTTATACAAACAAAAGGAGCAGAATTCAGTGATGGTTTAGAGTGTATTATCATCATC
TTATATAGGAACATTTTGATTGTTAGTTGATTGTAATCAACTACGAGATATTTGTATTGT
AGAAATCTGTAACATTTTCAAATATCATTTCAGCTTTTCTGGTCTGGACTTGACCATTTA
CTATTTGCAGTTTTAGCAACAATAATGTTTTGACGTTGCTTCAGAATGCTTGATCATTAA
CAAATGCTTT