Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Citrus sinensis

CDS Sequence

CDS ID

orange1.1t03142.1
CDS Infomation

gene=orange1.1t03142
Sequence

ATGGGAATATCAATCTTGAACATACTAATCCTTTCTCTTCTGTTAAATCTTTCCCATAGC
ATTGCTTCTTATTCTACTAAAGAAGCATTAGCTCTTCTCAAATGGAAAAAAAGTCTTCAA
AACCAAAACAGCTCTTTGTTGACGTCATGGACACTTTATCCTGCTAATGCAACCAATGTT
TCTTCCTACTCAAAAACCAAAATTAACCCTTGTGCTTGGGTTGGAATTTCTTGCAACCAA
GCTGAAAGAATCATCAGCATTAACCTCAGCTCTATGGGTTTAAATGGTACGCTTCAAGAA
TTTGCATTCTCATCCTTTCCTCATCTTGTGCATCTTAACCTTAGCTTTAATATAGTCTTT
GGTACCATCCCCCCTCAAGTCGGTAACCTCTCCAAGCTTCAGCATCTTGATCTAGGCAAT
AATCAATTAACTGGGGTAATACCACCAGAAATTGGTCATCTAAATCAGTTGAGGAGTCTT
TACTTTGATGTGAATCAGTTGCATGGCCCAATTCCACAAGAAATAGGTCAGTTAAGTCTT
ATTAATGAGCTTGCCTTGTGTCATAACAATTTATATGGTCCTATTCCTCCTTCTTTGGGT
AACTTAAGCAACTTGGCTAATTTTTATCTTAATAACAATTTACTTTTTGACTCCATTCCT
TTAGTTTTGGGAAATTTAAAATCTATTTCCACTTTGGACTTGAGCAAAAATCAGCTCAGT
GGCTCAATCCCATTTTCTTTAGGCAACTTAAGCAACTTGGGTATATTGTATCTTTATTCG
AATTCACTTTCTGGTCCTATTCCTTCGGTTATAGGAAATTTGGAGTCTCTTCTCCAACTA
GACTTGAGCGAAAATCAGCTTAGTGGTTCAATCCCTATTTCTTTAGGTAATTTAAGCAGC
TTGACTGTGATGTCTCTTTTTAGTAATTCACTTTCTAGTTTCATCCCTCCCATTCTAGGA
AACTTGAAGTCTCTTTCGGCACTAGGCTTGCACATAAATCAACTCAATGGTGTGATTCCT
TCTTCAATTGGTAATCTTAGCAATCTAAGACTTTTATATCTTTACAACAATGGGTTCTAT
GGTTTTGTTCCTGAGGAAATAGGATATTTGAAGTCTATTTTTGAATTAGAGCTTTGCACA
AATCGTCTTAGAGGGGGTATTCCTCATTCAATTGGCAATCTCACTGAGTTGGTTTTGGTA
AACATGTGCGAAAACCATCTTTCTGGTCCAATCCCTAAAAGTTTGAGAAATTTGACAAGC
TTAGAAAGAGTTCGTTTTAACCAAAACAATCTTTCTGGAAAAGTGTATGAAGCTTTTGGT
TATCATCCAAACCTAACTTTCTTAGATCTCAGCCAAAATAATTTTTACGGTGAAATCTCA
TTTAATTGGAGAAACTTTCCAAAACTGGGCACTTTCATTGTTTCCATGAATAATATTTCT
GGGAGCATACCACTTGAGATTGGAGAATCATTCAAATTACAGGTCCTTGACATTTCTTCA
AATCACATTGTTGGTGAAATTCCAGTGCAATTGGCAAAATTATTTTCTCTAAACAAACTA
ATTCTGAGTTTGAATCAACTTTCTGGAGGCATGCCTTTTGAACTTGGCTCACTAACTGAA
CTTCAATACCTCGACTTGTCTGCAAATAAACTGAGGAGTTGGATTCCAAAGAGTATAGGC
AACTTGTTGAAGTTGCGCTACTTGAATCTGAGCAATAATCAATTTATTCAGAAAATTCCA
ATTGAAGTGGAAAAGTTGATTCATCTTTCAAAGTTAGATTTGAGTTACAACTTTCTTGGC
AAAGAGATGCCGTTCCAAATATGCAATATGAAAAGCTTGGAGAAGTTAAATCTGTGTCAT
AATAATCTCTCTGGTTTCATTCCAAGATGTTTTGAAGGAATGCACAACTTATCACATATT
GACATATCCTATAATGAGTTACAAGGACCAATTCCTAATAGCACAACATTCAAAGATGCT
CGGATGGAAGGGAACAAAGGATTGTGTGGCAACATTAAAGGGTTGCCATCTTGCAAAGCA
TTCACGTCGTGCAAACAAGCTTCAAGAAAGAAATGGGTTGTTGTTATGTTCTCTAGTCTA
GTGATGATTATTCTTTTAATTTGTCTGATTGGTTTCAAGGTTCTTTTCCAACGAAGGAAT
GACTCAACAAAACAATAG

Peptide Sequence

PEP ID

orange1.1t03142.1
PEP Infomation
Sequence

MGISILNILILSLLLNLSHSIASYSTKEALALLKWKKSLQNQNSSLLTSWTLYPANATNV
SSYSKTKINPCAWVGISCNQAERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVF
GTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSL
INELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLS
GSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSS
LTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFY
GFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTS
LERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNIS
GSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTE
LQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLG
KEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNSTTFKDA
RMEGNKGLCGNIKGLPSCKAFTSCKQASRKKWVVVMFSSLVMIILLICLIGFKVLFQRRN
DSTKQ*

Transcript Sequence

Transcript ID

orange1.1t03142.1
Transcript Infomation

gene=orange1.1t03142 CDS=15-2192
Sequence

TTTCCACAAAAACAATGGGAATATCAATCTTGAACATACTAATCCTTTCTCTTCTGTTAA
ATCTTTCCCATAGCATTGCTTCTTATTCTACTAAAGAAGCATTAGCTCTTCTCAAATGGA
AAAAAAGTCTTCAAAACCAAAACAGCTCTTTGTTGACGTCATGGACACTTTATCCTGCTA
ATGCAACCAATGTTTCTTCCTACTCAAAAACCAAAATTAACCCTTGTGCTTGGGTTGGAA
TTTCTTGCAACCAAGCTGAAAGAATCATCAGCATTAACCTCAGCTCTATGGGTTTAAATG
GTACGCTTCAAGAATTTGCATTCTCATCCTTTCCTCATCTTGTGCATCTTAACCTTAGCT
TTAATATAGTCTTTGGTACCATCCCCCCTCAAGTCGGTAACCTCTCCAAGCTTCAGCATC
TTGATCTAGGCAATAATCAATTAACTGGGGTAATACCACCAGAAATTGGTCATCTAAATC
AGTTGAGGAGTCTTTACTTTGATGTGAATCAGTTGCATGGCCCAATTCCACAAGAAATAG
GTCAGTTAAGTCTTATTAATGAGCTTGCCTTGTGTCATAACAATTTATATGGTCCTATTC
CTCCTTCTTTGGGTAACTTAAGCAACTTGGCTAATTTTTATCTTAATAACAATTTACTTT
TTGACTCCATTCCTTTAGTTTTGGGAAATTTAAAATCTATTTCCACTTTGGACTTGAGCA
AAAATCAGCTCAGTGGCTCAATCCCATTTTCTTTAGGCAACTTAAGCAACTTGGGTATAT
TGTATCTTTATTCGAATTCACTTTCTGGTCCTATTCCTTCGGTTATAGGAAATTTGGAGT
CTCTTCTCCAACTAGACTTGAGCGAAAATCAGCTTAGTGGTTCAATCCCTATTTCTTTAG
GTAATTTAAGCAGCTTGACTGTGATGTCTCTTTTTAGTAATTCACTTTCTAGTTTCATCC
CTCCCATTCTAGGAAACTTGAAGTCTCTTTCGGCACTAGGCTTGCACATAAATCAACTCA
ATGGTGTGATTCCTTCTTCAATTGGTAATCTTAGCAATCTAAGACTTTTATATCTTTACA
ACAATGGGTTCTATGGTTTTGTTCCTGAGGAAATAGGATATTTGAAGTCTATTTTTGAAT
TAGAGCTTTGCACAAATCGTCTTAGAGGGGGTATTCCTCATTCAATTGGCAATCTCACTG
AGTTGGTTTTGGTAAACATGTGCGAAAACCATCTTTCTGGTCCAATCCCTAAAAGTTTGA
GAAATTTGACAAGCTTAGAAAGAGTTCGTTTTAACCAAAACAATCTTTCTGGAAAAGTGT
ATGAAGCTTTTGGTTATCATCCAAACCTAACTTTCTTAGATCTCAGCCAAAATAATTTTT
ACGGTGAAATCTCATTTAATTGGAGAAACTTTCCAAAACTGGGCACTTTCATTGTTTCCA
TGAATAATATTTCTGGGAGCATACCACTTGAGATTGGAGAATCATTCAAATTACAGGTCC
TTGACATTTCTTCAAATCACATTGTTGGTGAAATTCCAGTGCAATTGGCAAAATTATTTT
CTCTAAACAAACTAATTCTGAGTTTGAATCAACTTTCTGGAGGCATGCCTTTTGAACTTG
GCTCACTAACTGAACTTCAATACCTCGACTTGTCTGCAAATAAACTGAGGAGTTGGATTC
CAAAGAGTATAGGCAACTTGTTGAAGTTGCGCTACTTGAATCTGAGCAATAATCAATTTA
TTCAGAAAATTCCAATTGAAGTGGAAAAGTTGATTCATCTTTCAAAGTTAGATTTGAGTT
ACAACTTTCTTGGCAAAGAGATGCCGTTCCAAATATGCAATATGAAAAGCTTGGAGAAGT
TAAATCTGTGTCATAATAATCTCTCTGGTTTCATTCCAAGATGTTTTGAAGGAATGCACA
ACTTATCACATATTGACATATCCTATAATGAGTTACAAGGACCAATTCCTAATAGCACAA
CATTCAAAGATGCTCGGATGGAAGGGAACAAAGGATTGTGTGGCAACATTAAAGGGTTGC
CATCTTGCAAAGCATTCACGTCGTGCAAACAAGCTTCAAGAAAGAAATGGGTTGTTGTTA
TGTTCTCTAGTCTAGTGATGATTATTCTTTTAATTTGTCTGATTGGTTTCAAGGTTCTTT
TCCAACGAAGGAATGACTCAACAAAACAATAGAGGAGCTTTGTAAAGTGGAAACCCTCTA
AAATTGCTTTCAATGTTAACGTTTGACTGGAAAGAAGTTGTAGTTACTCAGCATTAAGAA
GTTGTATTCTTCTTAGATTTCCTTGTTGCTCTGTTTTCCAATCATGCCTTGTTCGAAGAG
A