Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Citrus sinensis

CDS Sequence

CDS ID

orange1.1t02224.1
CDS Infomation

gene=orange1.1t02224
Sequence

ATGGGTGAGGAGACATCCGATACAATGAATCTTGATTTGAATTTGGGTCCTGGTCCTGAG
GCTCAGTCAGGATCAATTCCCACTGAGGTTGTGAATTTGGATGATTGGGTTGATGAACCT
ATTGATAGACTTAGGGAAGCTGTTCGGTTGAGGTCTCGACAGCGGTATAGATGGAGACAG
GTTCCAATCCCTCCTGAAAGTAGGAACCTTCCAATGGAATTGGATCAATTGCTCAGCCAT
TCCGCTAATGGAAGTACATTACAGACAGGTGAGGGTAGTGTTGCTGCTGAGGAAAGAGCC
AATGAGGTACCCAAAACATGTGAAAACAACACTGGATTTTTGGAAGATGAAGTATCGGAG
AAGAAAGATGATGATGAGAAAGGTAGTGGAAATGATGGGAGTTTCTTCGATTGCAATATC
TGTTTAGATTTGTCTAGGGACCCTGTTGTGACTTGCTGTGGTCACTTGTTCTGTTGGCCT
TGCCTTTACAGATGGTTACACGTGCATTCAGATGCAAAGGAATGTCCAGTGTGCAAGGGT
GAGGTCACGGTTAAAAATATCACACCTATATATGGTCGTGGGAATAGCACACGTGAACCA
GAAGAGGACTCGAGTCTTAAGATCCCTCTAAGGCCCCAAGGACGGCGGATTGAGAGTTTG
AGGCAAACCATTCAGAGAACTGCTTACAGTTTTCCAGTAGAGGAGATGATCCGTCGTCTT
GGAAGTAGATTTGATTTGGCCCGTGATTTGACACCACTACGTGATGGCAGCAGTGCCAGG
GAAACAGGAGAAAGAGCAAATTCCTTGATAAATAGGATTCTGACATCCCGGGGTATTCGT
GGAGAGCAAAACACAGTTTCAGCTCCCCCAGATGATGTAGACGTGCAGAGTGGCTCAAAT
GCTGAGGGGGAAGCCCGTTTTCTCCATTCTCTATTAATGCGAAGACAAGCGCAAGCACAT
AGGGCTCCGACCTTTTCCTCTTCATTTTCTTCTACATTAAATTCAGCTGAAAGAGTGCTT
GAGTTTTATTTTCGGAACCTTCCTGAAAGAAGAAATCAAGAGCAACCTTCACCGCCAGTT
GATGATAGAGATTCTTTCTCAAGCATTGCTGCTGTTATAAACTCGGAGAGTCAAATGGAC
ACTGCGGTGGAAATTGATTCTATGGTATCCCTTTCTACTTCATCCTCCCGGAGAAGAAGT
GACAGTTCTAGGGTTTCGGATGTGGACAGTGGGGATTCTCGTGCCCCAAGAAGAAGACGC
TTGAACTAA

Peptide Sequence

PEP ID

orange1.1t02224.1
PEP Infomation
Sequence

MGEETSDTMNLDLNLGPGPEAQSGSIPTEVVNLDDWVDEPIDRLREAVRLRSRQRYRWRQ
VPIPPESRNLPMELDQLLSHSANGSTLQTGEGSVAAEERANEVPKTCENNTGFLEDEVSE
KKDDDEKGSGNDGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKG
EVTVKNITPIYGRGNSTREPEEDSSLKIPLRPQGRRIESLRQTIQRTAYSFPVEEMIRRL
GSRFDLARDLTPLRDGSSARETGERANSLINRILTSRGIRGEQNTVSAPPDDVDVQSGSN
AEGEARFLHSLLMRRQAQAHRAPTFSSSFSSTLNSAERVLEFYFRNLPERRNQEQPSPPV
DDRDSFSSIAAVINSESQMDTAVEIDSMVSLSTSSSRRRSDSSRVSDVDSGDSRAPRRRR
LN*

Transcript Sequence

Transcript ID

orange1.1t02224.1
Transcript Infomation

gene=orange1.1t02224 CDS=686-1954
Sequence

GATTACCCTAACAACTGAACTATCACCGTCAACTATGGGCCCAAATCGCATTACAACCGC
TAGATCAAAAAAACTTAAAATGCCTCGTTTAAAAACATAAGCATACGATTAGGCTTTTTT
TTTTTTGTCTTTTCTCTCTCTTTGTATTATTCATTCACGTCGCACGCTCATCTTCTTCTT
TTTTCCTATACGAGATCGCCAATTTTGAGAGAATAAAACTCGATGGCGAGTCAACTCGTA
GCCAGCTAAGTTCAGAGCAATAGATGCTGCCTTATCAACTGGGTCACAGTAGTTAGTCCG
GAGTTCCATCGTCAAGATCGTTACTTTAAAACCCAGGTTTCTTTAATTTCAATTTCCTGT
CTTTGATTCACAATTATCGATGTGTTTTTACCAAATTTTGGAATGATAACTCTTAATTGC
TGAGAATTGATTGTGGGGAAACCCTCGATGCAAAAAAAGTCGCCATCTTGTTGACATAAA
ATTAGGGTTTCTTTGATTTGGGGATTTTTAAAGATTTTGTTATAAAGTTGCGATTTTTTT
CTGGGTTTGAAGAATTAGTGATAAAGGAAGTGTTTTTTGATTTGGGGTTTTTGAATTTGT
CGAAAAAGAGTGGGTTTTGTGACTGGTTTTGTTCAAATTTGTGGAGGAATTAGGGTTTTT
TATTTCTGGGTTTGTCCAGTTTGAGATGGGTGAGGAGACATCCGATACAATGAATCTTGA
TTTGAATTTGGGTCCTGGTCCTGAGGCTCAGTCAGGATCAATTCCCACTGAGGTTGTGAA
TTTGGATGATTGGGTTGATGAACCTATTGATAGACTTAGGGAAGCTGTTCGGTTGAGGTC
TCGACAGCGGTATAGATGGAGACAGGTTCCAATCCCTCCTGAAAGTAGGAACCTTCCAAT
GGAATTGGATCAATTGCTCAGCCATTCCGCTAATGGAAGTACATTACAGACAGGTGAGGG
TAGTGTTGCTGCTGAGGAAAGAGCCAATGAGGTACCCAAAACATGTGAAAACAACACTGG
ATTTTTGGAAGATGAAGTATCGGAGAAGAAAGATGATGATGAGAAAGGTAGTGGAAATGA
TGGGAGTTTCTTCGATTGCAATATCTGTTTAGATTTGTCTAGGGACCCTGTTGTGACTTG
CTGTGGTCACTTGTTCTGTTGGCCTTGCCTTTACAGATGGTTACACGTGCATTCAGATGC
AAAGGAATGTCCAGTGTGCAAGGGTGAGGTCACGGTTAAAAATATCACACCTATATATGG
TCGTGGGAATAGCACACGTGAACCAGAAGAGGACTCGAGTCTTAAGATCCCTCTAAGGCC
CCAAGGACGGCGGATTGAGAGTTTGAGGCAAACCATTCAGAGAACTGCTTACAGTTTTCC
AGTAGAGGAGATGATCCGTCGTCTTGGAAGTAGATTTGATTTGGCCCGTGATTTGACACC
ACTACGTGATGGCAGCAGTGCCAGGGAAACAGGAGAAAGAGCAAATTCCTTGATAAATAG
GATTCTGACATCCCGGGGTATTCGTGGAGAGCAAAACACAGTTTCAGCTCCCCCAGATGA
TGTAGACGTGCAGAGTGGCTCAAATGCTGAGGGGGAAGCCCGTTTTCTCCATTCTCTATT
AATGCGAAGACAAGCGCAAGCACATAGGGCTCCGACCTTTTCCTCTTCATTTTCTTCTAC
ATTAAATTCAGCTGAAAGAGTGCTTGAGTTTTATTTTCGGAACCTTCCTGAAAGAAGAAA
TCAAGAGCAACCTTCACCGCCAGTTGATGATAGAGATTCTTTCTCAAGCATTGCTGCTGT
TATAAACTCGGAGAGTCAAATGGACACTGCGGTGGAAATTGATTCTATGGTATCCCTTTC
TACTTCATCCTCCCGGAGAAGAAGTGACAGTTCTAGGGTTTCGGATGTGGACAGTGGGGA
TTCTCGTGCCCCAAGAAGAAGACGCTTGAACTAATAAGAGTGTCTAATAAGATGTGAGTG
CTGATGCTCCTACTTCTACGGAGAGAGAGGAATTTTACACTCAACCTCAAATTACTCACC
AAATATTACATTTGAACAACTATGCAACTGCCGCTTGCATTTTACTGCTTTCGATCTACT
AGATTAATCACCTTCTTGCAACAGTTATTATATCTTATAGAGGTGATCATAAATTTTTAA
ATCATTGTTGCTTAGTTTTGTAGTTTGGAATACTATTATCCTTTATTCAAGGTCTGTGCT
TTTATCTTTCAAGTTGTATGGGAAATCAAACCTGCCGTGGAGCAAGGAGGTCAAATACCG
CTCACCATTGTACATAACCTTGCAGGTTTTATATGTTCGAGTAAAATCTTTTTTAATTAA
TTATTTCCACCATGTTTTATGAATCATTTTCATTTAACTTTGGATCTTGTCAGTTTATAT
TGATTACTCTGACTTGGCAGGGGATTAGTTAATAGTTTGTGTTATTTGTTGCTCTGTATT
GATTACCTTGGTTCTGAGTTTGTTCTAGTGATATCAAACGTCAAGAGGTCTTGTGTTTCT
CATAAAGCAAATCTCTTTCTCTATCAATTCTAAAAGAGGATAACCAATTACACCCACTTG
GAGTTATGATCAGG