Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Citrus sinensis

CDS Sequence

CDS ID

orange1.1t02095.1
CDS Infomation

gene=orange1.1t02095
Sequence

ATGTCCTCTACAGCAGCGACGACGCCATCTACAGTATCGAATGCGGGGCCCAAGATCTCG
AAGTTCGCCGCAAAATCAGGGTTTGTGATACCGAAGAACAAGCTCTCGGGTTCTCTGGTT
CCCGTTTTCAAAGGCGCGAAGAAGAACGATGCGATCAACGAAGAAGAAAAAGCTAGTAGT
AATGATGACGGTAAGAAGGTTGTGAGGAAGACAAAATGGGGACCTGATTTATCGCTAGAT
GCTTCTGTTAAAAGAGGACGAGCGTTGGCTTATCAGACTCGGGTGGATCAAATTGTGCAA
CAACTGGAATCGGGAAGTCTAGAAGCTGAGGAAAATCAAGTCCCGGAGGTAGCTGCTCAG
AATGCTGATCAGAAGTCTCCCAATCCTCAAGTTGACAGAGAGAAGTTAGAATGTTTGGAA
CTTGAGAAGCAGGAAGTGATAGGTGAGATACTAAAGTTGAATCCAAGTTACAGAACACCA
CCAGATTATAAACCTTTACTGAAAGAGGCTGTGGTTCCTATCCCTGTTAAGGAGTATCCA
GGATACAATTTTCTCGGCCTAATATTTGGACCTGCTAGTGATACTCAAAAACGGTTAGAA
AAGGAAACTAGAACCGTAATAAAAGTCTATGGCACTAAAGCAGATACAGGAGAGAAGGTT
GAAATTTCTACATCTGATGCAAATGTCCAGAGTACTTACGAAGAGTTTCACATTAGTATA
TCTGCTGACTCGTATGAGAAAGTTGATGCAGCAACTGATCTAATTGAATTGCTAGTCACT
TCAGTATCAGGAAGTTTGGCTGCCATTTCCACATCTACTTTGGTTTCTGGTGAAAATGTC
AGTGCTCTTAATCAAAGCCAAGGTGACGGTGCCCAATTTTTGGTCCCTAATACTTTTGTT
AACCAGGGAGTACCACAACCAGAGGTTGGTCCATTGCAAACTCCTTTACACGGTCAGTTT
CAGAGCCAAACTCCATGGTTCCCCTCAGGCCCATCTCAGAATCCAATGCATCCTCTGAAC
ACTTCATCTCCAATCCTTTCCAATCCTGTGAACATGCCTGCTAGATTCCCTTCAACTTTT
AAGACCCCATCTCTTGTTCCCCCCAGTTCGCAGCTGCAAATGCAAGTTCCACCAGGTCCG
TATATGCCTCAGATCCACTCTGGTGCGCCGAGAAACTTTCCTGTGCCAGCACCGCAGCCT
TCATCAATTCAATCTAACATGCCAGGCTCACATCCCTTTACTGGAATCCAACCCCAACCA
ACAGGGCCAATTCACATTGGAAGGCCATCGATGCCTTCATTGCCTCAAGCTGTGTCAAGC
GTTGGACCTAGACCACTGCCTGACCGGCCATTGATTCCTGCTGGGAACTTGACTGGATGG
TCTGGAGCTCCTGCAAATGCTGCAGCATCTTTAGGTTCAAGCAACCTGGGGCAGTTGGCT
CACGCAATGGGTCCTCCCCAGGGGTCACGGCCTGTTTTTGCGTCTGCACCTCCCGCTGCA
GGGGGGACATCCCCTGCATTTCCTGCTGCTTTACGTCCAACACAAGTTCCTGGTTCTGCA
CATACACCAGTCCAGCCTTCACCACATCTGACAATGGCAGCATCACCAGTGCTATCTGTA
TCACGGCCAACAATGCCGGCAGGAACTTCGGGTTCTTTTTCTGGGAGCATAACAAATTTT
TCGACTATGAATCTGTCTTCTGCAACAGCCCCCAGACCTCCACACCCAAGTTCTGGTGAT
TTCACTTTTCAACCTCACCAGCCACAAAATCCATCCCCTCTTACAGTTCCGAGGCCAAGT
GGAATGCTGCCTACTCAATCCACTAGATCAATGGGACAAATGCCTGCTCCTCAATCTCCA
TCTTTCCGCATGGGTGCTCCTAATACAGCTCCTCAGCATATCATGCAAGTTCCTAGGCCA
CAGGTCGGAAACCAGATGGGTCAGCCTCATGCCCAGCACACATCAGCTGTTCCATTTGCT
AGAAACCCAAATGCAGCTTTTGCAAATGTAAGTCCAGTTTCACCTACTACTCCGCCTTCA
CAAATGGGACCGAGAAGTTTCAGTACAGGTCCCCAAATGCATTATCCGCCTGGGCCTTTC
CCACCTCGGCCAGCAAATCCTTTGCCACGAAATCATCCAGCTCTACCCAATCGACCTGAA
AGGCACATGGGCCTGAATCAGCAGTTTAGTAACAACCGCTCTGGAGGACCACAGATTTAT
GATCCATTCTCCCCTACTTCCACGTCTGTTCCATCTCAACAGCAGGGAGGTAATCCGGCT
CGGGCAAGAAAACCGGAGAATGATCCAGAGTATGAAGATTTGATGGCTTCTGTTGGAGTT
AAATGA

Peptide Sequence

PEP ID

orange1.1t02095.1
PEP Infomation
Sequence

MSSTAATTPSTVSNAGPKISKFAAKSGFVIPKNKLSGSLVPVFKGAKKNDAINEEEKASS
NDDGKKVVRKTKWGPDLSLDASVKRGRALAYQTRVDQIVQQLESGSLEAEENQVPEVAAQ
NADQKSPNPQVDREKLECLELEKQEVIGEILKLNPSYRTPPDYKPLLKEAVVPIPVKEYP
GYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISI
SADSYEKVDAATDLIELLVTSVSGSLAAISTSTLVSGENVSALNQSQGDGAQFLVPNTFV
NQGVPQPEVGPLQTPLHGQFQSQTPWFPSGPSQNPMHPLNTSSPILSNPVNMPARFPSTF
KTPSLVPPSSQLQMQVPPGPYMPQIHSGAPRNFPVPAPQPSSIQSNMPGSHPFTGIQPQP
TGPIHIGRPSMPSLPQAVSSVGPRPLPDRPLIPAGNLTGWSGAPANAAASLGSSNLGQLA
HAMGPPQGSRPVFASAPPAAGGTSPAFPAALRPTQVPGSAHTPVQPSPHLTMAASPVLSV
SRPTMPAGTSGSFSGSITNFSTMNLSSATAPRPPHPSSGDFTFQPHQPQNPSPLTVPRPS
GMLPTQSTRSMGQMPAPQSPSFRMGAPNTAPQHIMQVPRPQVGNQMGQPHAQHTSAVPFA
RNPNAAFANVSPVSPTTPPSQMGPRSFSTGPQMHYPPGPFPPRPANPLPRNHPALPNRPE
RHMGLNQQFSNNRSGGPQIYDPFSPTSTSVPSQQQGGNPARARKPENDPEYEDLMASVGV
K*

Transcript Sequence

Transcript ID

orange1.1t02095.1
Transcript Infomation

gene=orange1.1t02095 CDS=186-2531
Sequence

AAAGTATCTCTGACCTCATCAGTCCTCACTGTTCTCAAAACGCAGCGTTTCACTTCATCT
CCTAATATTCACTTCATCATCTGAAACTCGGCTCCGTTCCTACTTCCTAGATCATTTCAA
AAACCCTAACTTCTCTCTTTCTTGTAATTTACCCTCTCAATTTGCTAAAATCTGATACAG
CTAACATGTCCTCTACAGCAGCGACGACGCCATCTACAGTATCGAATGCGGGGCCCAAGA
TCTCGAAGTTCGCCGCAAAATCAGGGTTTGTGATACCGAAGAACAAGCTCTCGGGTTCTC
TGGTTCCCGTTTTCAAAGGCGCGAAGAAGAACGATGCGATCAACGAAGAAGAAAAAGCTA
GTAGTAATGATGACGGTAAGAAGGTTGTGAGGAAGACAAAATGGGGACCTGATTTATCGC
TAGATGCTTCTGTTAAAAGAGGACGAGCGTTGGCTTATCAGACTCGGGTGGATCAAATTG
TGCAACAACTGGAATCGGGAAGTCTAGAAGCTGAGGAAAATCAAGTCCCGGAGGTAGCTG
CTCAGAATGCTGATCAGAAGTCTCCCAATCCTCAAGTTGACAGAGAGAAGTTAGAATGTT
TGGAACTTGAGAAGCAGGAAGTGATAGGTGAGATACTAAAGTTGAATCCAAGTTACAGAA
CACCACCAGATTATAAACCTTTACTGAAAGAGGCTGTGGTTCCTATCCCTGTTAAGGAGT
ATCCAGGATACAATTTTCTCGGCCTAATATTTGGACCTGCTAGTGATACTCAAAAACGGT
TAGAAAAGGAAACTAGAACCGTAATAAAAGTCTATGGCACTAAAGCAGATACAGGAGAGA
AGGTTGAAATTTCTACATCTGATGCAAATGTCCAGAGTACTTACGAAGAGTTTCACATTA
GTATATCTGCTGACTCGTATGAGAAAGTTGATGCAGCAACTGATCTAATTGAATTGCTAG
TCACTTCAGTATCAGGAAGTTTGGCTGCCATTTCCACATCTACTTTGGTTTCTGGTGAAA
ATGTCAGTGCTCTTAATCAAAGCCAAGGTGACGGTGCCCAATTTTTGGTCCCTAATACTT
TTGTTAACCAGGGAGTACCACAACCAGAGGTTGGTCCATTGCAAACTCCTTTACACGGTC
AGTTTCAGAGCCAAACTCCATGGTTCCCCTCAGGCCCATCTCAGAATCCAATGCATCCTC
TGAACACTTCATCTCCAATCCTTTCCAATCCTGTGAACATGCCTGCTAGATTCCCTTCAA
CTTTTAAGACCCCATCTCTTGTTCCCCCCAGTTCGCAGCTGCAAATGCAAGTTCCACCAG
GTCCGTATATGCCTCAGATCCACTCTGGTGCGCCGAGAAACTTTCCTGTGCCAGCACCGC
AGCCTTCATCAATTCAATCTAACATGCCAGGCTCACATCCCTTTACTGGAATCCAACCCC
AACCAACAGGGCCAATTCACATTGGAAGGCCATCGATGCCTTCATTGCCTCAAGCTGTGT
CAAGCGTTGGACCTAGACCACTGCCTGACCGGCCATTGATTCCTGCTGGGAACTTGACTG
GATGGTCTGGAGCTCCTGCAAATGCTGCAGCATCTTTAGGTTCAAGCAACCTGGGGCAGT
TGGCTCACGCAATGGGTCCTCCCCAGGGGTCACGGCCTGTTTTTGCGTCTGCACCTCCCG
CTGCAGGGGGGACATCCCCTGCATTTCCTGCTGCTTTACGTCCAACACAAGTTCCTGGTT
CTGCACATACACCAGTCCAGCCTTCACCACATCTGACAATGGCAGCATCACCAGTGCTAT
CTGTATCACGGCCAACAATGCCGGCAGGAACTTCGGGTTCTTTTTCTGGGAGCATAACAA
ATTTTTCGACTATGAATCTGTCTTCTGCAACAGCCCCCAGACCTCCACACCCAAGTTCTG
GTGATTTCACTTTTCAACCTCACCAGCCACAAAATCCATCCCCTCTTACAGTTCCGAGGC
CAAGTGGAATGCTGCCTACTCAATCCACTAGATCAATGGGACAAATGCCTGCTCCTCAAT
CTCCATCTTTCCGCATGGGTGCTCCTAATACAGCTCCTCAGCATATCATGCAAGTTCCTA
GGCCACAGGTCGGAAACCAGATGGGTCAGCCTCATGCCCAGCACACATCAGCTGTTCCAT
TTGCTAGAAACCCAAATGCAGCTTTTGCAAATGTAAGTCCAGTTTCACCTACTACTCCGC
CTTCACAAATGGGACCGAGAAGTTTCAGTACAGGTCCCCAAATGCATTATCCGCCTGGGC
CTTTCCCACCTCGGCCAGCAAATCCTTTGCCACGAAATCATCCAGCTCTACCCAATCGAC
CTGAAAGGCACATGGGCCTGAATCAGCAGTTTAGTAACAACCGCTCTGGAGGACCACAGA
TTTATGATCCATTCTCCCCTACTTCCACGTCTGTTCCATCTCAACAGCAGGGAGGTAATC
CGGCTCGGGCAAGAAAACCGGAGAATGATCCAGAGTATGAAGATTTGATGGCTTCTGTTG
GAGTTAAATGATGTGGTGTTGCCTTGTTGAATGAATCAGTAGGTTAGACCCTAAATGAGA
GAAATGGAGATAGAGGATTGTTGAAATTACTTGTGACATGTTACTGAATTCTATTTTCTG
GGAATCGTAAAAAGAAATGTTGTCGTTTTCCTTCTTACATTTATTTAAATATTTCATCCT
TGATTTGCTGATTACCTC