Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Citrus sinensis

CDS Sequence

CDS ID

orange1.1t02058.3
CDS Infomation

gene=orange1.1t02058
Sequence

ATGGAGATAGAAACAGAGACAACAAACAACGTGATGTGTCTCTTAACGGACCCAGAAGGG
AATCCATTAGGAGCTCCCATGTACTTCCCTCAAAACGCCGGCCCTCAACAGCTTTCGCAA
ATCGTTAACAAGCTTCTCAATAATGAGGAGAAGTTACCGTATGCTTTTTATATATCAGAC
CATGAGCTTCTGGTGCCGCTTGGAAGCTACTTAGAGAAACATAAAGTTTCTGTGGAGAAG
GTGTTGTCGATAGTTTATCAACCACAAGCTGTTTTCAGAATTCGTCCGGTTAATCGTTGT
TCAGCTACTATTGCTGGTCATACAGAAGCTGTACTTTCAGTAGCCTTTAGTCCTGATGGG
CGACAGTTGGCCAGTGGTTCTGGTGATACCACTGTCCGACTATGGGACCTTAATACCCAG
ACGCCAATGTTCAAATGTACAGGACACAAGAATTGGGTTCTGTGTATAGCATGGTCTGCT
GATGGTAAGCATCTAGTTAGTGGGAGCAAGGCCGGAGAACTTCAATGTTGGGATCCCCAG
ACAGGAAAGCCATCAGGCAATCCACTCAGTGGCCACAAGAAATGGATTACTGGTATCTCT
TGGGAGCCAGTCCATCTGAATGCTCCTTGTCGTCGCTTTGTAAGTGCTAGCAAAGATGGA
GATGCACGTATATGGGATGTTTCATTGCGAAAATGTGTTATTTGTCTTAGCGGGCACACG
CTTGCAGTGACTTGTGTGAAATGGGGTGGCGATGGAGTGATTTACACAGGTTCACAGGAC
TGTACTATAAAAGTTTGGGAAACTACGCAAGGGAAGCTGATTCGTGAATTGAAGGGTCAT
GGACATTGGGTCAACTCCCTTGCATTGAGCACCGAATATGCTCTTCGCACTGGAGCTTTT
GATCATACAGGGAAACAGTATTCGTCTCCTGAGGAAATGAAAAAGGCCGCTCTGGAGAGG
TATAACAAAATTAAAGGCAATGCTCCTGAAAGATTGGTATCAGGATCTGATGATTTTACA
ATGTTCCTCTGGGAACCTGCTGTTAGCAAACAACCTAAAACTCGTATGACAGGTCATCAA
CAGCTTGTAAACCATGTTTATTTTTCACCTGATGGGCAATGGGTGGCAAGCGCCTCATTT
GATAAGTCTATCAAGTTATGGAATGGAACGACAGGAAAATTTGTTGCTGTTTTCCGGGGA
CATGTTGGGCCTGTTTATCAGATCAGGTTTGAGTTAATCTATTGTTTTAGATATCCGTCA
AACTTTTACTGTGTGGTTGATATGTCATGTTGTATGTCACTATACAGCTGGTCTGCGGAT
AGTAGGCTTCTTCTAAGTGGGAGCAAAGATTCCACATTGAAGGTTTGGGATATACGGACA
CAGAAGCTGAAACAAGATCTTCCAGGCCATGCAGACGAGGTATCTTCACTCTGA

Peptide Sequence

PEP ID

orange1.1t02058.3
PEP Infomation
Sequence

MEIETETTNNVMCLLTDPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYISD
HELLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDG
RQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ
TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHT
LAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAF
DHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQ
QLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPS
NFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVSSL*

Transcript Sequence

Transcript ID

orange1.1t02058.3
Transcript Infomation

gene=orange1.1t02058 CDS=265-1698
Sequence

CTAGTTCACAAAATATGAAGGGCAAAATTGTCCTTTGATTCGGTAATCTTTGACCGACAA
GCCCTAATTATTATTAAAGAATTAAGCTGTGTCCAGAATCCAACGGCAGTAGCGTGGCCA
CGTGTACGACCCACATGAATCTCCCCTAAACCTTGCCCGTAAATCTCCACCATCCTCGTC
TACATAGAACCTAAAACCCTATAAATCCTTCTCAATTTAAGAACAGAGAAAACAGAAAGA
TCCAAAAATTATCAAAATAGGAAAATGGAGATAGAAACAGAGACAACAAACAACGTGATG
TGTCTCTTAACGGACCCAGAAGGGAATCCATTAGGAGCTCCCATGTACTTCCCTCAAAAC
GCCGGCCCTCAACAGCTTTCGCAAATCGTTAACAAGCTTCTCAATAATGAGGAGAAGTTA
CCGTATGCTTTTTATATATCAGACCATGAGCTTCTGGTGCCGCTTGGAAGCTACTTAGAG
AAACATAAAGTTTCTGTGGAGAAGGTGTTGTCGATAGTTTATCAACCACAAGCTGTTTTC
AGAATTCGTCCGGTTAATCGTTGTTCAGCTACTATTGCTGGTCATACAGAAGCTGTACTT
TCAGTAGCCTTTAGTCCTGATGGGCGACAGTTGGCCAGTGGTTCTGGTGATACCACTGTC
CGACTATGGGACCTTAATACCCAGACGCCAATGTTCAAATGTACAGGACACAAGAATTGG
GTTCTGTGTATAGCATGGTCTGCTGATGGTAAGCATCTAGTTAGTGGGAGCAAGGCCGGA
GAACTTCAATGTTGGGATCCCCAGACAGGAAAGCCATCAGGCAATCCACTCAGTGGCCAC
AAGAAATGGATTACTGGTATCTCTTGGGAGCCAGTCCATCTGAATGCTCCTTGTCGTCGC
TTTGTAAGTGCTAGCAAAGATGGAGATGCACGTATATGGGATGTTTCATTGCGAAAATGT
GTTATTTGTCTTAGCGGGCACACGCTTGCAGTGACTTGTGTGAAATGGGGTGGCGATGGA
GTGATTTACACAGGTTCACAGGACTGTACTATAAAAGTTTGGGAAACTACGCAAGGGAAG
CTGATTCGTGAATTGAAGGGTCATGGACATTGGGTCAACTCCCTTGCATTGAGCACCGAA
TATGCTCTTCGCACTGGAGCTTTTGATCATACAGGGAAACAGTATTCGTCTCCTGAGGAA
ATGAAAAAGGCCGCTCTGGAGAGGTATAACAAAATTAAAGGCAATGCTCCTGAAAGATTG
GTATCAGGATCTGATGATTTTACAATGTTCCTCTGGGAACCTGCTGTTAGCAAACAACCT
AAAACTCGTATGACAGGTCATCAACAGCTTGTAAACCATGTTTATTTTTCACCTGATGGG
CAATGGGTGGCAAGCGCCTCATTTGATAAGTCTATCAAGTTATGGAATGGAACGACAGGA
AAATTTGTTGCTGTTTTCCGGGGACATGTTGGGCCTGTTTATCAGATCAGGTTTGAGTTA
ATCTATTGTTTTAGATATCCGTCAAACTTTTACTGTGTGGTTGATATGTCATGTTGTATG
TCACTATACAGCTGGTCTGCGGATAGTAGGCTTCTTCTAAGTGGGAGCAAAGATTCCACA
TTGAAGGTTTGGGATATACGGACACAGAAGCTGAAACAAGATCTTCCAGGCCATGCAGAC
GAGGTATCTTCACTCTGAAATTAATGTCTTCTGAGCATAATT