Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Citrus sinensis

CDS Sequence

CDS ID

orange1.1t02052.1
CDS Infomation

gene=orange1.1t02052
Sequence

ATGCTTTCAAGAGCAAGAAATATCTCTCAATCAAAACTGAAACCCATCTTTCATGAATCA
TTTTTAACCAAAATCACAAGCCCCTATCTCCAATTACACCCCACAAAAGCACTAAAAGCA
CCCACCTCCTCCTCCTCCTCCTCCTCCTTCTCTTCACAACCCACTAACACAGCACCACCA
CCACTTTCTTCATCTTTGGCCCTGACAAGAGATGGAAATTACGATGAAGCCACTCCCAAG
CTCACCGTCTGCCCCGGCTGCGGCGTCCTCATGCAAGACACGAACCCGAAACACCCCGGT
TACTTCATCAGACCTTCGCAGAATTTGAACAAAGTGAGAAAATCCCATCTTGTACACGTA
GCCAATGAGTCTGAATTTTCAAATTCCCTTAAAAAGGGCGGGCTTGTTGTTTTTGAAGCT
GAAAATGAAACATCAGAAGTTAAAAAACACGAAAAGCCGGTGGTTTGTGCCAGGTGTCAT
GCTTTAAGGCATTATGGGAAGGTGAAGGATGTGACCGTGGAGAATTTGTTGCCGGATTTT
GATTTTGATCATACGGTTGGGAGGAAGTTGATGTCGGCCAGCGGGGCTAGATCGGTTGTT
TTGATGGTGGTTGATGCAGCTGATTTTGATGGGTCGTTTCCTAGGAAAGTAGCGAAAATG
GTATCAGATACAGCTGAGGAGAATGAGAGGGCGTGGAAAGAAGGTAAGTCGGGTAATGTT
CCTAGAGTTGTATTAGTTGTGACTAAGATTGATTTGTTGCCGAGTTCTTTGTCGCCTACT
AGATTTGAACATTGGGTTAGGCAACGAGCTAGAGAAGACGGCATTAGTAAGATTACTAAG
TTGCATTTCGTTAGTGCTGTTAAGAACTGGGGTTTAAAGAGTCTTATAGATGATGTTGTT
GATTTGGCGGGAAAGAGGGGGAATGTGTGGGCCATAGGAGCACAAAATGCGGGGAAAAGT
ACATTATTGAATGCCATTGCTAAGAGTGTGGATGCTGGTAGAGGAGGAGATGGAGAAGAG
AAGAATATTGTTAGTCATTTGACAGAGGCACCCGTGCCTGGAACAACGCTTGGGATCGTG
AGAGTGGAAGGAGTTTTGCCTGCTCAGGCTAAGTTGTTTGACACACCGGGATTGCTACAT
CCCAATCAGATTACCACTAGGTTGACAAGAGAGGAACAAAAACTTGTCAATATTAACAAG
GAGTTGAAGCCGAGAACTTATAGGATCAAGGCAGGTCATTCCATTCACATTGCCGGGCTC
ATGAGGATGGATGTTGAGGAATCATCTGTAGAGTCTATCTATGTGACAGTGTGGGCATCA
CCATATCTTCCATTACACATGGGGAAAACCGAAAATGCGTGCACAATGGTAGAGAAGCAT
TTTGGTCGTCAGCTACAGCCACCAATTGGAGAGAAACGAGTTGAAGAGCTAGGAAAATGG
GTGAGAAAGGAATTTCATGTCTCTGGTAGCAGTTGGGATTCAAGTTCTGTAGATATTGCT
GCTGCCGGACTTGGCTGGTTTTCTGTCAGACTTAAAGGAGAGGCAGCATTAGGTGTTTGG
ACCTACGAAGGAGTTGACATTGTCCTTCGCAATGCTTTACTTCCCTATAGATCTCAGGTG
TTTGAAGTTGCAGGATTTACAGTCTCAAAAATCATCTCCAAAGCAGATCAGTCTCTTAAT
AAGTCAAAGCGGCTAAATGAAGCCAAGAGGAAACCAAGGGAACCAGAAGGAACAATACAT
CCGAAATCTTCATTATCAACGATTGATTCTGTTTCAAGTTCTTGCCAACACCTTCAGCTT
TTGTAA

Peptide Sequence

PEP ID

orange1.1t02052.1
PEP Infomation
Sequence

MLSRARNISQSKLKPIFHESFLTKITSPYLQLHPTKALKAPTSSSSSSSFSSQPTNTAPP
PLSSSLALTRDGNYDEATPKLTVCPGCGVLMQDTNPKHPGYFIRPSQNLNKVRKSHLVHV
ANESEFSNSLKKGGLVVFEAENETSEVKKHEKPVVCARCHALRHYGKVKDVTVENLLPDF
DFDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNV
PRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVV
DLAGKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIV
RVEGVLPAQAKLFDTPGLLHPNQITTRLTREEQKLVNINKELKPRTYRIKAGHSIHIAGL
MRMDVEESSVESIYVTVWASPYLPLHMGKTENACTMVEKHFGRQLQPPIGEKRVEELGKW
VRKEFHVSGSSWDSSSVDIAAAGLGWFSVRLKGEAALGVWTYEGVDIVLRNALLPYRSQV
FEVAGFTVSKIISKADQSLNKSKRLNEAKRKPREPEGTIHPKSSLSTIDSVSSSCQHLQL
L*

Transcript Sequence

Transcript ID

orange1.1t02052.1
Transcript Infomation

gene=orange1.1t02052 CDS=176-1981
Sequence

GTTCATTTGAAATTTTGTCACAGCATTGTGAGGATTTGAATGCAAATTGCAACTCTACCT
ATTACACGTCGTCGTTTCAGTGCATCAACCATATACGCCTGTTGATCTTCAAAGCTTCTC
TAGAACCCTAAACCCTGAAAAGAAAACGAAATTTCGGTCAAAACAAAGAGAAGAAATGCT
TTCAAGAGCAAGAAATATCTCTCAATCAAAACTGAAACCCATCTTTCATGAATCATTTTT
AACCAAAATCACAAGCCCCTATCTCCAATTACACCCCACAAAAGCACTAAAAGCACCCAC
CTCCTCCTCCTCCTCCTCCTCCTTCTCTTCACAACCCACTAACACAGCACCACCACCACT
TTCTTCATCTTTGGCCCTGACAAGAGATGGAAATTACGATGAAGCCACTCCCAAGCTCAC
CGTCTGCCCCGGCTGCGGCGTCCTCATGCAAGACACGAACCCGAAACACCCCGGTTACTT
CATCAGACCTTCGCAGAATTTGAACAAAGTGAGAAAATCCCATCTTGTACACGTAGCCAA
TGAGTCTGAATTTTCAAATTCCCTTAAAAAGGGCGGGCTTGTTGTTTTTGAAGCTGAAAA
TGAAACATCAGAAGTTAAAAAACACGAAAAGCCGGTGGTTTGTGCCAGGTGTCATGCTTT
AAGGCATTATGGGAAGGTGAAGGATGTGACCGTGGAGAATTTGTTGCCGGATTTTGATTT
TGATCATACGGTTGGGAGGAAGTTGATGTCGGCCAGCGGGGCTAGATCGGTTGTTTTGAT
GGTGGTTGATGCAGCTGATTTTGATGGGTCGTTTCCTAGGAAAGTAGCGAAAATGGTATC
AGATACAGCTGAGGAGAATGAGAGGGCGTGGAAAGAAGGTAAGTCGGGTAATGTTCCTAG
AGTTGTATTAGTTGTGACTAAGATTGATTTGTTGCCGAGTTCTTTGTCGCCTACTAGATT
TGAACATTGGGTTAGGCAACGAGCTAGAGAAGACGGCATTAGTAAGATTACTAAGTTGCA
TTTCGTTAGTGCTGTTAAGAACTGGGGTTTAAAGAGTCTTATAGATGATGTTGTTGATTT
GGCGGGAAAGAGGGGGAATGTGTGGGCCATAGGAGCACAAAATGCGGGGAAAAGTACATT
ATTGAATGCCATTGCTAAGAGTGTGGATGCTGGTAGAGGAGGAGATGGAGAAGAGAAGAA
TATTGTTAGTCATTTGACAGAGGCACCCGTGCCTGGAACAACGCTTGGGATCGTGAGAGT
GGAAGGAGTTTTGCCTGCTCAGGCTAAGTTGTTTGACACACCGGGATTGCTACATCCCAA
TCAGATTACCACTAGGTTGACAAGAGAGGAACAAAAACTTGTCAATATTAACAAGGAGTT
GAAGCCGAGAACTTATAGGATCAAGGCAGGTCATTCCATTCACATTGCCGGGCTCATGAG
GATGGATGTTGAGGAATCATCTGTAGAGTCTATCTATGTGACAGTGTGGGCATCACCATA
TCTTCCATTACACATGGGGAAAACCGAAAATGCGTGCACAATGGTAGAGAAGCATTTTGG
TCGTCAGCTACAGCCACCAATTGGAGAGAAACGAGTTGAAGAGCTAGGAAAATGGGTGAG
AAAGGAATTTCATGTCTCTGGTAGCAGTTGGGATTCAAGTTCTGTAGATATTGCTGCTGC
CGGACTTGGCTGGTTTTCTGTCAGACTTAAAGGAGAGGCAGCATTAGGTGTTTGGACCTA
CGAAGGAGTTGACATTGTCCTTCGCAATGCTTTACTTCCCTATAGATCTCAGGTGTTTGA
AGTTGCAGGATTTACAGTCTCAAAAATCATCTCCAAAGCAGATCAGTCTCTTAATAAGTC
AAAGCGGCTAAATGAAGCCAAGAGGAAACCAAGGGAACCAGAAGGAACAATACATCCGAA
ATCTTCATTATCAACGATTGATTCTGTTTCAAGTTCTTGCCAACACCTTCAGCTTTTGTA
ATAGAAGAAAGATAAGTAAGAATGACATCCGGTTAGGGATACAAAATAACAATTATGATC
CTTGATAGTATCTGATGCCGCAAGTAGCTCCTTGAGAAAACGAAAATGCAATAGATCTGG
GTTGATAGCTTGAAGACAGCCAGACTCTTACCAGTTTCCCCAAGAAGCGGCTTCAAAGAA
GTATCTGGTTGTATATTTGGAAGAAAGACTCTTGTGCACTGAGAAAACAAAATGCATCAG
TTCACTGCTTTGGCTTGAAGAAGATGCAGTATTTATGTCCGTCCCAGAAACATAAACTAA
ACAATTGAGCGTACAAGTTTAAAAATTATTCTGTTCATAGTTAAAAGTTTCACAGTTTTG
TAGCCACATTTATTAGAAAACTACACGGTAAGTTATTCTATTTGCTCTGGTTTCCTTAAG
AGTGATGAACTGTTCTTGTGTTGCAATTTGTTACCCCCTGAAATCTTCTTTCCAGTAATC
ACACGAGGCGTGATTTGGTCAAG