Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Citrus sinensis

CDS Sequence

CDS ID

orange1.1t01946.1
CDS Infomation

gene=orange1.1t01946
Sequence

ATGGCACTTAAGGTTTCAGCTCAAAAGGCTGCTGAGGTTGCTATTGGGTCAATTGGGCGT
GGATATGATATAGCTATAGATCTGAGATTGAAGTATTGTAAAGGAGATTTGAAAGATTCA
CGGTTGATTGAGATTGATAAAGATGGGGGTCGAGAAATTGTTTTGCCTGGTGGAATTTCT
ATCCCAAATGTGTCCAAATCCATAAAATGCGACAAAGGGGAGCGTACACGGTTTAGGTCC
GATGTTCTCTCCTTCCAGCAGATGTCAGAGCAGTTCAATCAGGAACTGTCTTTAACTGGT
AAAATTCCTTCGGGCCTCTTCAATGCCATGTTCGAATTTTCGGGTTATTGGCAGAAAGAT
GCAGCCAATACCAAGACACTCGCTTTTGATGGGATGTTTATCTCACTCTACTCTGTTGCA
TTGGAGAAATCTCAGATGGTACTTCGTGACCGTGTAAAGAAAGCCGTCCCAGCAACATGG
GAACCTGCAGCACTAGCAAGTTTTATCGAGACATATGGTACACATATTATTGTTGGTGTG
AGGATGGGAGGAAAAGATGTAATATATGTCAAACAAAAGCATTCATCAACTCTTCAACCT
GCTGATGTACAGAAAAGATTGAAAGAGATGGCAGATAAGAGGTTTTTAGATGCAAATGGA
CAATATAGCCTGTCCTCTGAACAAGTCTACCAAAATGACAAGTTTGACATCAGGGAACAG
CGTTTGAGGTTTGCTGATACAAGTCCTTCAAGTTCGTATTCATACAAAGAGGATATGGTA
TGCATTTGCAAAAGGAGAGGTGGAAGTGACAATAGAAACCTATCCCATAATGAATGGTTA
CACACTGTTCAATTTGAGCCTGATGTGACCTCGATGTCCTTCATCCCAATTACTTCACTA
TTAAATGGAGTCCCTGGGAGTGGATTCTTAAGTCATGCCATAAATCTCTACTTACGATAT
AAACCACCAATAGAAGAACTCCACCAGTTTCTGGAGTTTCAGCTACCTAGGCAGTGGGCG
CCAGTGTTCAGTGAGCTTCCACTTGGTCCTCAACGGAAGCAACAAAGTACTGCATCATTA
AAGTTCAGTCTCATGGGTCCCAAGCTTTTTGTGAATACCAATCCGGTTGATGTGGGTCAT
AGGCCGGTGACAGGCCTGCGGCTCTATCTAGAAGGTCGAAGCAGCAATCGTTTGGCTGTT
CACTTGCAGCACCTCTCTTCACTTCCGAAAATCTTCCAACTCGTAGATGATCCAAATGGA
AACTTCCGTCGAGAGAATCATGACCGTAAATACTATGAGAAAGTTCAGTGGAAGAACTAC
TCTCATGTGTGCACAGCTCCTGTTGAGCCTTACGAGGATCTTTCTATTGTTACTGGGGCT
CAATTACATGTCGAAAACCATGGGTTCAAAAACATTCTTTTCTTACGACTCCGTTTCTCA
ACTGTGTTAGGAGCAACAGTCCTCAAGCATCCAGAATGGGATGGATCACCCGGCTTGGCA
CCCAAATCTGGACTCATATCAACACTTATCAGTCATCACTTCACAACTGTACAGAAGCCG
CCCCCACGGCCAGCTGATGTCAATATAAACTCAGCCGTGTATCCTGGCGGCCCTCCCGTT
CCCGTCCAAGCCCCAAAGCTTCTAAAATTTGTTGATACAACGGAGATGACAAGAGGACCA
CAAGATTCTCCTGGATATTGGGTTGTTTCTGGGGCAAGATTAGTTGTCGAGAAGGGAAGG
ATCTCGCTACGAGTTAAGTATTCTTTGCTAACTGTAGTATTACCCGATGAAGAAGAAGAA
GAATTATCAGAACATTAG

Peptide Sequence

PEP ID

orange1.1t01946.1
PEP Infomation
Sequence

MALKVSAQKAAEVAIGSIGRGYDIAIDLRLKYCKGDLKDSRLIEIDKDGGREIVLPGGIS
IPNVSKSIKCDKGERTRFRSDVLSFQQMSEQFNQELSLTGKIPSGLFNAMFEFSGYWQKD
AANTKTLAFDGMFISLYSVALEKSQMVLRDRVKKAVPATWEPAALASFIETYGTHIIVGV
RMGGKDVIYVKQKHSSTLQPADVQKRLKEMADKRFLDANGQYSLSSEQVYQNDKFDIREQ
RLRFADTSPSSSYSYKEDMVCICKRRGGSDNRNLSHNEWLHTVQFEPDVTSMSFIPITSL
LNGVPGSGFLSHAINLYLRYKPPIEELHQFLEFQLPRQWAPVFSELPLGPQRKQQSTASL
KFSLMGPKLFVNTNPVDVGHRPVTGLRLYLEGRSSNRLAVHLQHLSSLPKIFQLVDDPNG
NFRRENHDRKYYEKVQWKNYSHVCTAPVEPYEDLSIVTGAQLHVENHGFKNILFLRLRFS
TVLGATVLKHPEWDGSPGLAPKSGLISTLISHHFTTVQKPPPRPADVNINSAVYPGGPPV
PVQAPKLLKFVDTTEMTRGPQDSPGYWVVSGARLVVEKGRISLRVKYSLLTVVLPDEEEE
ELSEH*

Transcript Sequence

Transcript ID

orange1.1t01946.1
Transcript Infomation

gene=orange1.1t01946 CDS=384-2201
Sequence

AGTCAAACTAAATCAATACACTCAACACATCATTATTTCTCATATAATTTTATAAAAAAA
ATTCTTTTCCGTGTCTCGTGTTTTTTTTTTCTTTTCCCTACAATAAAGTAATTTACTCTC
AGCGTTCTAGGGTTTGTACGTTCTCTCTCTTAATATTGTTCTTTTTTTCACTTTCTCTCT
CCAAACTTCTCTCGAGAGAGTCGAGTTCTCGCATTTGGTCAAGTGTTCAATCGACGAGAC
TTACTCTTCTGGATTCAATTTGTGCCATTTTTTGTTTTTTATTTTGACACTTCCGAGTTG
GAGCTCGAGCATTGTGGCGAGCTGAAATTTTGAAAACAGTGTGAAAAAATTGGTTTTGCT
GAACAAGAGTTATGTGGTGAGTAATGGCACTTAAGGTTTCAGCTCAAAAGGCTGCTGAGG
TTGCTATTGGGTCAATTGGGCGTGGATATGATATAGCTATAGATCTGAGATTGAAGTATT
GTAAAGGAGATTTGAAAGATTCACGGTTGATTGAGATTGATAAAGATGGGGGTCGAGAAA
TTGTTTTGCCTGGTGGAATTTCTATCCCAAATGTGTCCAAATCCATAAAATGCGACAAAG
GGGAGCGTACACGGTTTAGGTCCGATGTTCTCTCCTTCCAGCAGATGTCAGAGCAGTTCA
ATCAGGAACTGTCTTTAACTGGTAAAATTCCTTCGGGCCTCTTCAATGCCATGTTCGAAT
TTTCGGGTTATTGGCAGAAAGATGCAGCCAATACCAAGACACTCGCTTTTGATGGGATGT
TTATCTCACTCTACTCTGTTGCATTGGAGAAATCTCAGATGGTACTTCGTGACCGTGTAA
AGAAAGCCGTCCCAGCAACATGGGAACCTGCAGCACTAGCAAGTTTTATCGAGACATATG
GTACACATATTATTGTTGGTGTGAGGATGGGAGGAAAAGATGTAATATATGTCAAACAAA
AGCATTCATCAACTCTTCAACCTGCTGATGTACAGAAAAGATTGAAAGAGATGGCAGATA
AGAGGTTTTTAGATGCAAATGGACAATATAGCCTGTCCTCTGAACAAGTCTACCAAAATG
ACAAGTTTGACATCAGGGAACAGCGTTTGAGGTTTGCTGATACAAGTCCTTCAAGTTCGT
ATTCATACAAAGAGGATATGGTATGCATTTGCAAAAGGAGAGGTGGAAGTGACAATAGAA
ACCTATCCCATAATGAATGGTTACACACTGTTCAATTTGAGCCTGATGTGACCTCGATGT
CCTTCATCCCAATTACTTCACTATTAAATGGAGTCCCTGGGAGTGGATTCTTAAGTCATG
CCATAAATCTCTACTTACGATATAAACCACCAATAGAAGAACTCCACCAGTTTCTGGAGT
TTCAGCTACCTAGGCAGTGGGCGCCAGTGTTCAGTGAGCTTCCACTTGGTCCTCAACGGA
AGCAACAAAGTACTGCATCATTAAAGTTCAGTCTCATGGGTCCCAAGCTTTTTGTGAATA
CCAATCCGGTTGATGTGGGTCATAGGCCGGTGACAGGCCTGCGGCTCTATCTAGAAGGTC
GAAGCAGCAATCGTTTGGCTGTTCACTTGCAGCACCTCTCTTCACTTCCGAAAATCTTCC
AACTCGTAGATGATCCAAATGGAAACTTCCGTCGAGAGAATCATGACCGTAAATACTATG
AGAAAGTTCAGTGGAAGAACTACTCTCATGTGTGCACAGCTCCTGTTGAGCCTTACGAGG
ATCTTTCTATTGTTACTGGGGCTCAATTACATGTCGAAAACCATGGGTTCAAAAACATTC
TTTTCTTACGACTCCGTTTCTCAACTGTGTTAGGAGCAACAGTCCTCAAGCATCCAGAAT
GGGATGGATCACCCGGCTTGGCACCCAAATCTGGACTCATATCAACACTTATCAGTCATC
ACTTCACAACTGTACAGAAGCCGCCCCCACGGCCAGCTGATGTCAATATAAACTCAGCCG
TGTATCCTGGCGGCCCTCCCGTTCCCGTCCAAGCCCCAAAGCTTCTAAAATTTGTTGATA
CAACGGAGATGACAAGAGGACCACAAGATTCTCCTGGATATTGGGTTGTTTCTGGGGCAA
GATTAGTTGTCGAGAAGGGAAGGATCTCGCTACGAGTTAAGTATTCTTTGCTAACTGTAG
TATTACCCGATGAAGAAGAAGAAGAATTATCAGAACATTAGGAAATTTTTTGTCCCCTCT
CTCGAGCCTTTGAAAAAAGATGTCATAAAATGAAAAGCAAAAAGAAGCTAGCGAAAGAAT
CAAAGAAACGATGTATAGATCAAAGAAAGGGCAGATGGAGAGGGCGCTAGGGCCACTGGA
AGAAATACGCAAGTAGTTAATCAAAACAACTTTAGCTTTTTCATTTGGCGAAGAAGTGCT
TCGGATTGGAAGCGCTTGGGATGGGTGGTGGTGGTGGTTGTATTATTGTGTTTATCACCA
TTTTCTGTTGCAATGTAATTTTTTGTAATTTTTTTTTTTTTTTTCATGTAGAGTCTTGTC
TTGAATCTTTGATAGTGCTGATTGCATTTTGGCTATAAAGTATTTCTCATCCTG