Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Citrus sinensis

CDS Sequence

CDS ID

orange1.1t01720.6
CDS Infomation

gene=orange1.1t01720
Sequence

ATGAAGATTTTTGCAGCTCAAGTGGAGGAAGGAAAGGAGGGAAAAGATGGGAAGCCCTCA
GTTGGTCCTGTTTATCGGAATTTGCTAGCCTCGAACGGCTTCCCTTCAGTAGACAGTGAT
TTAAATACTGCTTGGGATATCTTCAGCATGTCTGTTCAGAAGTATCCAGGTAATAGGATG
TTGGGCTGGCGTCCATTTGTTGATGGGAAGTTTGGGCCTTATGTTTGGAAAACTTACAAA
GAAGTTTACGAGGAAGTTCTGCAGATTGTTTCAGCATTGCGAGCATCTGGGGCTGAACCT
GGTTGTCGCGTTGGCATTTATGGAGCAAACTGCCCTCAGTGGGTTGAGGCAATGGAGGCT
TGCAATGCCCTCAGTTTAATTTGTGTGCCTCTTTACGATACCCTTGGGCCAGGGGCTGTG
AATTTTATACTAGATCATGCAGAGATTGATTTTGTTTTTGTCCAAGATAAGAAAGTGAAA
GAACTACTGAGTCCTGATTGTAGATCTGCTCAACGACTGAGAGTAATGGTATGCTTCACC
TCATTGACAGCGGAGCAGAAGGAAATGGCTGTACAAACTGGGATTAAACCTTACTCATGG
GATGAGTTCCTCCACTTGGGTAAAGTAAATGAAATGGAGATTTTGCCACCACAGCCTTTT
AATATTTGCACAATCATGTATACTAGCGGAACCAGTGGAGATCCAAAAGGTGTTGTGTTA
ACACATGAAACAATTGCAACGTTTGTCAGTGGGGTTGATCTCTTTCTGGATCAATTTGAA
GACAAGATGACAGTGGATGACGTGTATCTGTCTTTCCTGCCTCTTGCTCATATTCTTGAC
CGCGTGATTGAGGAATATTTTTTCCGTAGGGGTGCTTCTGTTGGTTACTACCATGGGGAT
TTGAATGCATTGAGGGATGATTTGATGGAGTTGAAGCCAACACTTCTAGCGGGTGTGCCG
CGGGTATTTGAAAAGATTCATGAAGGTATAAAGAAAGCACTAGAAGAACTCAGACCTCTA
AGGAGGCGAATTTTTGATGCCCTGTACAAATACAAACTTGCTTGGATGAATATGGGATAT
AAACAGAGAGAAGCATCACCGCTGGCAGATCTGTTAGCCTTCAGGAAGGTCAAAGCCAGG
TTAGGTGGCCGCCTTCGTCTAGTAATAAGTGGTGGTGCACCCTTGAGCACTGAGGTGGAA
GAGTTCTTACGGGTTACTTGCTGTGCCTTTCTAGTCCAAGGCTATGGTTTGACAGAAACA
TGTGGACCAACCACAGTTTGCTTTCCAGATGAAATGTGCATGGTTGGTACTGCTGGTCCA
GTATCTGTATACAGTGAGCTTCGTCTGGAGGAGGTCCCAGAGATGGGCTACAGTCCGCTT
GACGATCCACCTTGTGGTGAGGTATGCGTGAGAGGCAAGACTCTTTTTTCTGGGTATTAC
AAAAATCCAGATCTAACAAGAGAATCCATAATAGACGGGTGGTTTCATACAGGGGATATA
GGACAAATTTTACCCAATGGAGTTGTTAAGATCATTGATAGGAAAAAGAATCTTATAAAA
ATATCTCAGGGAGAGTATGTTGCACTTGAATATTTGGAAAATGTTTATTGCGTGGCTCCT
ATAATTGAAGACCCTCAAGTCAATGTTAGTTGCAGTAGTTGTGCCATGCGAAGAAGACAC
CAAAAAGTGGGCATACTCGAATGGTCATGCTGGTTCATTCCTGGAACTTTGTTCACTTGT
TCAGCTACAAAATTATATCCTCTCAGAGCTGAAGAATGCAGCTGA

Peptide Sequence

PEP ID

orange1.1t01720.6
PEP Infomation
Sequence

MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM
LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA
CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT
SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL
THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD
LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY
KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET
CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY
KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP
IIEDPQVNVSCSSCAMRRRHQKVGILEWSCWFIPGTLFTCSATKLYPLRAEECS*

Transcript Sequence

Transcript ID

orange1.1t01720.6
Transcript Infomation

gene=orange1.1t01720 CDS=346-2130
Sequence

CAGCATTCAAGTCTGTCCAACTAACTCATTAACAACCATACTGCTACGACAACAAATGTA
TCCCCATTTTGTTGTCCCATCAAGCCCAGTTCCACCACCCCCACCCTTGCATTGCATGAT
TCAGTTTCCACATGGTAAGGTTCTCAATTTCTGCGTATTTATTTATGTACATTTACTTAT
TCTAGGCACGGATATGGGGTCACGCAGATTCTGAGTGTTGGCCTCTTCATAAGCACTAAC
CTCTTTATACTGCTGGTTTCAAGAACTGGAACTCTTGTGTTGTTATACAAATGTCCAGTT
TGCGGAGTCTTTGAGCTGTTCTAGTTTCTCTCGGGCCCAAAAAAAATGAAGATTTTTGCA
GCTCAAGTGGAGGAAGGAAAGGAGGGAAAAGATGGGAAGCCCTCAGTTGGTCCTGTTTAT
CGGAATTTGCTAGCCTCGAACGGCTTCCCTTCAGTAGACAGTGATTTAAATACTGCTTGG
GATATCTTCAGCATGTCTGTTCAGAAGTATCCAGGTAATAGGATGTTGGGCTGGCGTCCA
TTTGTTGATGGGAAGTTTGGGCCTTATGTTTGGAAAACTTACAAAGAAGTTTACGAGGAA
GTTCTGCAGATTGTTTCAGCATTGCGAGCATCTGGGGCTGAACCTGGTTGTCGCGTTGGC
ATTTATGGAGCAAACTGCCCTCAGTGGGTTGAGGCAATGGAGGCTTGCAATGCCCTCAGT
TTAATTTGTGTGCCTCTTTACGATACCCTTGGGCCAGGGGCTGTGAATTTTATACTAGAT
CATGCAGAGATTGATTTTGTTTTTGTCCAAGATAAGAAAGTGAAAGAACTACTGAGTCCT
GATTGTAGATCTGCTCAACGACTGAGAGTAATGGTATGCTTCACCTCATTGACAGCGGAG
CAGAAGGAAATGGCTGTACAAACTGGGATTAAACCTTACTCATGGGATGAGTTCCTCCAC
TTGGGTAAAGTAAATGAAATGGAGATTTTGCCACCACAGCCTTTTAATATTTGCACAATC
ATGTATACTAGCGGAACCAGTGGAGATCCAAAAGGTGTTGTGTTAACACATGAAACAATT
GCAACGTTTGTCAGTGGGGTTGATCTCTTTCTGGATCAATTTGAAGACAAGATGACAGTG
GATGACGTGTATCTGTCTTTCCTGCCTCTTGCTCATATTCTTGACCGCGTGATTGAGGAA
TATTTTTTCCGTAGGGGTGCTTCTGTTGGTTACTACCATGGGGATTTGAATGCATTGAGG
GATGATTTGATGGAGTTGAAGCCAACACTTCTAGCGGGTGTGCCGCGGGTATTTGAAAAG
ATTCATGAAGGTATAAAGAAAGCACTAGAAGAACTCAGACCTCTAAGGAGGCGAATTTTT
GATGCCCTGTACAAATACAAACTTGCTTGGATGAATATGGGATATAAACAGAGAGAAGCA
TCACCGCTGGCAGATCTGTTAGCCTTCAGGAAGGTCAAAGCCAGGTTAGGTGGCCGCCTT
CGTCTAGTAATAAGTGGTGGTGCACCCTTGAGCACTGAGGTGGAAGAGTTCTTACGGGTT
ACTTGCTGTGCCTTTCTAGTCCAAGGCTATGGTTTGACAGAAACATGTGGACCAACCACA
GTTTGCTTTCCAGATGAAATGTGCATGGTTGGTACTGCTGGTCCAGTATCTGTATACAGT
GAGCTTCGTCTGGAGGAGGTCCCAGAGATGGGCTACAGTCCGCTTGACGATCCACCTTGT
GGTGAGGTATGCGTGAGAGGCAAGACTCTTTTTTCTGGGTATTACAAAAATCCAGATCTA
ACAAGAGAATCCATAATAGACGGGTGGTTTCATACAGGGGATATAGGACAAATTTTACCC
AATGGAGTTGTTAAGATCATTGATAGGAAAAAGAATCTTATAAAAATATCTCAGGGAGAG
TATGTTGCACTTGAATATTTGGAAAATGTTTATTGCGTGGCTCCTATAATTGAAGACCCT
CAAGTCAATGTTAGTTGCAGTAGTTGTGCCATGCGAAGAAGACACCAAAAAGTGGGCATA
CTCGAATGGTCATGCTGGTTCATTCCTGGAACTTTGTTCACTTGTTCAGCTACAAAATTA
TATCCTCTCAGAGCTGAAGAATGCAGCTGAGAGAAACAAGCTGAGGGGATTTGAACACAT
CAAAGGAGTCATCTTGGATCCTCGCCCATTTGACATGGAAAGAGATTTAGTGACTGCCAC
ATTGAAGAAGAAAAGAAACAAACTGCTCATATATTATCAGGTGGAAATTGATCAACTATA
TGAAAAACTGGCCCCGGGACGACGCTGATGAAATATGAGTACAATGTCGGTCGACTTTAT
CAACGAGAACTCAACTTGTTTTGTGCTTGCCCTTGCTTTACTAACAAAAGATTTTTAGTA
ACTTATTTTCTGTTTGAAAATAAAATTGTAAGAACAATCCTCTACTTCTATAGCCTTTTG
CTTGATGTTGATGTATAAAAGTCGTGAACACCTCTTAAAAGAATGAGAGAATAAAATACA
GACGGTTCATATATGTG